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Gene: ALPL |
Gene summary for ALPL |
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Gene information | Species | Human | Gene symbol | ALPL | Gene ID | 249 |
Gene name | alkaline phosphatase, biomineralization associated | |
Gene Alias | AP-TNAP | |
Cytomap | 1p36.12 | |
Gene Type | protein-coding | GO ID | GO:0000003 | UniProtAcc | A0A024RAG0 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
249 | ALPL | P8T-E | Human | Esophagus | ESCC | 1.51e-34 | 7.88e-01 | 0.0889 |
249 | ALPL | P12T-E | Human | Esophagus | ESCC | 3.28e-14 | 4.16e-01 | 0.1122 |
249 | ALPL | P15T-E | Human | Esophagus | ESCC | 1.35e-04 | 1.69e-01 | 0.1149 |
249 | ALPL | P23T-E | Human | Esophagus | ESCC | 1.99e-08 | 5.54e-01 | 0.108 |
249 | ALPL | P28T-E | Human | Esophagus | ESCC | 3.60e-13 | 2.75e-01 | 0.1149 |
249 | ALPL | P42T-E | Human | Esophagus | ESCC | 2.42e-06 | 5.11e-01 | 0.1175 |
249 | ALPL | P57T-E | Human | Esophagus | ESCC | 1.66e-02 | 2.74e-01 | 0.0926 |
249 | ALPL | P61T-E | Human | Esophagus | ESCC | 6.51e-14 | 3.77e-01 | 0.099 |
249 | ALPL | P65T-E | Human | Esophagus | ESCC | 1.35e-28 | 9.16e-01 | 0.0978 |
249 | ALPL | P74T-E | Human | Esophagus | ESCC | 4.21e-29 | 9.94e-01 | 0.1479 |
249 | ALPL | P76T-E | Human | Esophagus | ESCC | 1.49e-39 | 1.16e+00 | 0.1207 |
249 | ALPL | P79T-E | Human | Esophagus | ESCC | 1.00e-24 | 6.33e-01 | 0.1154 |
249 | ALPL | P126T-E | Human | Esophagus | ESCC | 6.92e-05 | 1.94e+00 | 0.1125 |
249 | ALPL | P130T-E | Human | Esophagus | ESCC | 4.41e-07 | 3.28e-01 | 0.1676 |
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Tissue | Expression Dynamics | Abbreviation |
Esophagus | ![]() | ESCC: Esophageal squamous cell carcinoma |
HGIN: High-grade intraepithelial neoplasias | ||
LGIN: Low-grade intraepithelial neoplasias |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0031667111 | Esophagus | ESCC | response to nutrient levels | 289/8552 | 474/18723 | 9.25e-12 | 3.47e-10 | 289 |
GO:001631110 | Esophagus | ESCC | dephosphorylation | 251/8552 | 417/18723 | 1.26e-09 | 2.99e-08 | 251 |
GO:0048545111 | Esophagus | ESCC | response to steroid hormone | 204/8552 | 339/18723 | 4.47e-08 | 8.11e-07 | 204 |
GO:000758410 | Esophagus | ESCC | response to nutrient | 114/8552 | 174/18723 | 9.43e-08 | 1.56e-06 | 114 |
GO:000164918 | Esophagus | ESCC | osteoblast differentiation | 140/8552 | 229/18723 | 1.63e-06 | 1.95e-05 | 140 |
GO:000150317 | Esophagus | ESCC | ossification | 232/8552 | 408/18723 | 3.00e-06 | 3.40e-05 | 232 |
GO:003249619 | Esophagus | ESCC | response to lipopolysaccharide | 191/8552 | 343/18723 | 1.11e-04 | 7.73e-04 | 191 |
GO:00332734 | Esophagus | ESCC | response to vitamin | 60/8552 | 93/18723 | 1.89e-04 | 1.21e-03 | 60 |
GO:00466774 | Esophagus | ESCC | response to antibiotic | 34/8552 | 47/18723 | 1.91e-04 | 1.21e-03 | 34 |
GO:000223719 | Esophagus | ESCC | response to molecule of bacterial origin | 194/8552 | 363/18723 | 1.64e-03 | 7.61e-03 | 194 |
GO:00603485 | Esophagus | ESCC | bone development | 115/8552 | 205/18723 | 1.67e-03 | 7.72e-03 | 115 |
GO:0033280 | Esophagus | ESCC | response to vitamin D | 25/8552 | 35/18723 | 1.82e-03 | 8.35e-03 | 25 |
GO:003196020 | Esophagus | ESCC | response to corticosteroid | 95/8552 | 167/18723 | 2.27e-03 | 9.99e-03 | 95 |
GO:005138420 | Esophagus | ESCC | response to glucocorticoid | 85/8552 | 148/18723 | 2.60e-03 | 1.11e-02 | 85 |
GO:00487052 | Esophagus | ESCC | skeletal system morphogenesis | 120/8552 | 220/18723 | 4.90e-03 | 1.89e-02 | 120 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
ALPL | SNV | Missense_Mutation | rs766076920 | c.667C>T | p.Arg223Trp | p.R223W | P05186 | protein_coding | deleterious(0) | probably_damaging(0.998) | TCGA-66-2767-01 | Lung | lung squamous cell carcinoma | Male | <65 | III/IV | Unknown | Unknown | SD |
ALPL | SNV | Missense_Mutation | c.1484N>A | p.Gly495Asp | p.G495D | P05186 | protein_coding | tolerated(0.95) | benign(0) | TCGA-85-6560-01 | Lung | lung squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | cisplatin | SD | |
ALPL | SNV | Missense_Mutation | novel | c.799N>G | p.His267Asp | p.H267D | P05186 | protein_coding | deleterious(0.01) | benign(0.324) | TCGA-CN-4731-01 | Oral cavity | head & neck squamous cell carcinoma | Female | <65 | I/II | Chemotherapy | erbitux | PD |
ALPL | SNV | Missense_Mutation | c.1171N>A | p.Arg391Ser | p.R391S | P05186 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-CN-6010-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | cisplatin | PD | |
ALPL | SNV | Missense_Mutation | c.1471G>T | p.Gly491Trp | p.G491W | P05186 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-CR-7385-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | unknown | SD | |
ALPL | SNV | Missense_Mutation | novel | c.366N>T | p.Lys122Asn | p.K122N | P05186 | protein_coding | deleterious(0) | probably_damaging(0.998) | TCGA-CR-7388-01 | Oral cavity | head & neck squamous cell carcinoma | Female | >=65 | I/II | Chemotherapy | carboplatin | PD |
ALPL | SNV | Missense_Mutation | c.1484N>T | p.Gly495Val | p.G495V | P05186 | protein_coding | tolerated(0.1) | benign(0) | TCGA-CV-A6K1-01 | Oral cavity | head & neck squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
ALPL | SNV | Missense_Mutation | c.79N>G | p.Lys27Glu | p.K27E | P05186 | protein_coding | tolerated(1) | benign(0.001) | TCGA-BR-6452-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
ALPL | SNV | Missense_Mutation | rs745704006 | c.910N>A | p.Val304Met | p.V304M | P05186 | protein_coding | deleterious(0.02) | benign(0.243) | TCGA-D7-A4YY-01 | Stomach | stomach adenocarcinoma | Male | <65 | III/IV | Chemotherapy | 5-fluorouracil | SD |
ALPL | SNV | Missense_Mutation | rs756418235 | c.1130N>T | p.Ala377Val | p.A377V | P05186 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-F1-6177-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
249 | ALPL | ENZYME, DRUGGABLE GENOME | 5,7,3',5'-TETRAHYDROXYFLAVANONE | CHEMBL307893 | ||
249 | ALPL | ENZYME, DRUGGABLE GENOME | NSC-353720 | CHEMBL1408276 | ||
249 | ALPL | ENZYME, DRUGGABLE GENOME | RETINOIC ACID | 10691970 | ||
249 | ALPL | ENZYME, DRUGGABLE GENOME | CEPHALOCHROMIN | CEPHALOCHROMIN | ||
249 | ALPL | ENZYME, DRUGGABLE GENOME | Levamisole | LEVAMISOLE | ||
249 | ALPL | ENZYME, DRUGGABLE GENOME | THUNBERGINOL B | THUNBERGINOL B | ||
249 | ALPL | ENZYME, DRUGGABLE GENOME | CID 646303 | CHEMBL505807 | ||
249 | ALPL | ENZYME, DRUGGABLE GENOME | TYRPHOSTIN 23 | TYRPHOSTIN 23 | ||
249 | ALPL | ENZYME, DRUGGABLE GENOME | DNDI1417523 | CHEMBL598663 | ||
249 | ALPL | ENZYME, DRUGGABLE GENOME | 2-AMINOPHENOXAZINONE | CHEMBL146710 |
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