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Gene: SQRDL |
Gene summary for SQRDL |
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Gene information | Species | Human | Gene symbol | SQRDL | Gene ID | 58472 |
Gene name | sulfide quinone oxidoreductase | |
Gene Alias | CGI-44 | |
Cytomap | 15q21.1 | |
Gene Type | protein-coding | GO ID | GO:0006790 | UniProtAcc | A0A024R5X2 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
58472 | SQRDL | GSM4909281 | Human | Breast | IDC | 7.78e-22 | -3.58e-01 | 0.21 |
58472 | SQRDL | GSM4909282 | Human | Breast | IDC | 2.31e-20 | -3.58e-01 | -0.0288 |
58472 | SQRDL | GSM4909285 | Human | Breast | IDC | 4.25e-21 | -3.58e-01 | 0.21 |
58472 | SQRDL | GSM4909286 | Human | Breast | IDC | 2.31e-20 | -3.58e-01 | 0.1081 |
58472 | SQRDL | GSM4909287 | Human | Breast | IDC | 8.98e-18 | -3.58e-01 | 0.2057 |
58472 | SQRDL | GSM4909288 | Human | Breast | IDC | 1.06e-03 | -3.58e-01 | 0.0988 |
58472 | SQRDL | GSM4909289 | Human | Breast | IDC | 2.25e-02 | -3.58e-01 | 0.1064 |
58472 | SQRDL | GSM4909290 | Human | Breast | IDC | 1.45e-12 | -3.58e-01 | 0.2096 |
58472 | SQRDL | GSM4909291 | Human | Breast | IDC | 4.52e-10 | -3.58e-01 | 0.1753 |
58472 | SQRDL | GSM4909293 | Human | Breast | IDC | 9.92e-21 | -3.58e-01 | 0.1581 |
58472 | SQRDL | GSM4909294 | Human | Breast | IDC | 2.31e-20 | -3.58e-01 | 0.2022 |
58472 | SQRDL | GSM4909295 | Human | Breast | IDC | 8.74e-08 | -3.58e-01 | 0.0898 |
58472 | SQRDL | GSM4909296 | Human | Breast | IDC | 4.25e-21 | -3.58e-01 | 0.1524 |
58472 | SQRDL | GSM4909297 | Human | Breast | IDC | 3.31e-22 | -3.58e-01 | 0.1517 |
58472 | SQRDL | GSM4909298 | Human | Breast | IDC | 3.31e-22 | -3.58e-01 | 0.1551 |
58472 | SQRDL | GSM4909299 | Human | Breast | IDC | 4.25e-21 | -3.58e-01 | 0.035 |
58472 | SQRDL | GSM4909300 | Human | Breast | IDC | 8.44e-07 | -3.58e-01 | 0.0334 |
58472 | SQRDL | GSM4909301 | Human | Breast | IDC | 4.25e-21 | -3.58e-01 | 0.1577 |
58472 | SQRDL | GSM4909302 | Human | Breast | IDC | 1.65e-17 | -3.58e-01 | 0.1545 |
58472 | SQRDL | GSM4909303 | Human | Breast | IDC | 2.67e-04 | -3.58e-01 | 0.0438 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa009202 | Colorectum | SER | Sulfur metabolism | 8/1580 | 10/8465 | 4.56e-05 | 5.22e-04 | 3.79e-04 | 8 |
hsa009203 | Colorectum | SER | Sulfur metabolism | 8/1580 | 10/8465 | 4.56e-05 | 5.22e-04 | 3.79e-04 | 8 |
hsa009204 | Colorectum | MSS | Sulfur metabolism | 6/1875 | 10/8465 | 1.07e-02 | 3.74e-02 | 2.29e-02 | 6 |
hsa009205 | Colorectum | MSS | Sulfur metabolism | 6/1875 | 10/8465 | 1.07e-02 | 3.74e-02 | 2.29e-02 | 6 |
hsa009206 | Colorectum | FAP | Sulfur metabolism | 6/1404 | 10/8465 | 2.36e-03 | 1.13e-02 | 6.85e-03 | 6 |
hsa009207 | Colorectum | FAP | Sulfur metabolism | 6/1404 | 10/8465 | 2.36e-03 | 1.13e-02 | 6.85e-03 | 6 |
hsa009208 | Colorectum | CRC | Sulfur metabolism | 5/1091 | 10/8465 | 5.07e-03 | 2.72e-02 | 1.84e-02 | 5 |
hsa009209 | Colorectum | CRC | Sulfur metabolism | 5/1091 | 10/8465 | 5.07e-03 | 2.72e-02 | 1.84e-02 | 5 |
hsa0092010 | Esophagus | ESCC | Sulfur metabolism | 9/4205 | 10/8465 | 1.01e-02 | 2.38e-02 | 1.22e-02 | 9 |
hsa0092011 | Esophagus | ESCC | Sulfur metabolism | 9/4205 | 10/8465 | 1.01e-02 | 2.38e-02 | 1.22e-02 | 9 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
SQRDL | SNV | Missense_Mutation | novel | c.514G>C | p.Val172Leu | p.V172L | Q9Y6N5 | protein_coding | tolerated(0.64) | benign(0.003) | TCGA-CR-7364-01 | Oral cavity | head & neck squamous cell carcinoma | Male | >=65 | III/IV | Unknown | Unknown | SD |
SQRDL | SNV | Missense_Mutation | novel | c.931N>C | p.Asp311His | p.D311H | Q9Y6N5 | protein_coding | deleterious(0.01) | probably_damaging(0.996) | TCGA-D6-A4ZB-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | III/IV | Unknown | Unknown | SD |
SQRDL | SNV | Missense_Mutation | novel | c.278N>T | p.Ala93Val | p.A93V | Q9Y6N5 | protein_coding | tolerated(1) | benign(0.005) | TCGA-F7-A624-01 | Oral cavity | head & neck squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
SQRDL | SNV | Missense_Mutation | novel | c.965N>A | p.Thr322Asn | p.T322N | Q9Y6N5 | protein_coding | deleterious(0.02) | possibly_damaging(0.548) | TCGA-ZG-A9L1-01 | Prostate | prostate adenocarcinoma | Male | >=65 | 9 | Unknown | Unknown | SD |
SQRDL | SNV | Missense_Mutation | rs778928942 | c.290N>T | p.Ser97Phe | p.S97F | Q9Y6N5 | protein_coding | deleterious(0.01) | possibly_damaging(0.722) | TCGA-BR-8589-01 | Stomach | stomach adenocarcinoma | Male | <65 | III/IV | Unknown | Unknown | SD |
SQRDL | SNV | Missense_Mutation | novel | c.590N>T | p.Thr197Ile | p.T197I | Q9Y6N5 | protein_coding | deleterious(0) | benign(0.309) | TCGA-FY-A4B0-01 | Thyroid | thyroid carcinoma | Male | >=65 | I/II | Hormone Therapy | synthroid | SD |
SQRDL | SNV | Missense_Mutation | novel | c.592N>T | p.Pro198Ser | p.P198S | Q9Y6N5 | protein_coding | deleterious(0.02) | possibly_damaging(0.733) | TCGA-FY-A4B0-01 | Thyroid | thyroid carcinoma | Male | >=65 | I/II | Hormone Therapy | synthroid | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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