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Gene: SBNO1 |
Gene summary for SBNO1 |
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Gene information | Species | Human | Gene symbol | SBNO1 | Gene ID | 55206 |
Gene name | strawberry notch homolog 1 | |
Gene Alias | MOP3 | |
Cytomap | 12q24.31 | |
Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | A3KN83 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
55206 | SBNO1 | HTA11_3410_2000001011 | Human | Colorectum | AD | 1.62e-04 | -2.86e-01 | 0.0155 |
55206 | SBNO1 | HTA11_347_2000001011 | Human | Colorectum | AD | 4.48e-04 | 4.05e-01 | -0.1954 |
55206 | SBNO1 | HTA11_99999965062_69753 | Human | Colorectum | MSI-H | 2.40e-04 | 9.91e-01 | 0.3487 |
55206 | SBNO1 | HTA11_99999965104_69814 | Human | Colorectum | MSS | 1.36e-05 | 6.22e-01 | 0.281 |
55206 | SBNO1 | A001-C-207 | Human | Colorectum | FAP | 4.28e-02 | -1.85e-01 | 0.1278 |
55206 | SBNO1 | A015-C-203 | Human | Colorectum | FAP | 9.90e-12 | -2.19e-01 | -0.1294 |
55206 | SBNO1 | A015-C-204 | Human | Colorectum | FAP | 2.72e-03 | -1.36e-01 | -0.0228 |
55206 | SBNO1 | A002-C-201 | Human | Colorectum | FAP | 1.87e-07 | -1.22e-01 | 0.0324 |
55206 | SBNO1 | A001-C-108 | Human | Colorectum | FAP | 1.02e-04 | 3.08e-02 | -0.0272 |
55206 | SBNO1 | A002-C-205 | Human | Colorectum | FAP | 2.53e-10 | -2.13e-02 | -0.1236 |
55206 | SBNO1 | A015-C-006 | Human | Colorectum | FAP | 2.88e-08 | 5.28e-02 | -0.0994 |
55206 | SBNO1 | A015-C-106 | Human | Colorectum | FAP | 1.16e-02 | -2.05e-03 | -0.0511 |
55206 | SBNO1 | A002-C-114 | Human | Colorectum | FAP | 4.09e-11 | -2.65e-01 | -0.1561 |
55206 | SBNO1 | A015-C-104 | Human | Colorectum | FAP | 3.94e-12 | -1.13e-01 | -0.1899 |
55206 | SBNO1 | A001-C-014 | Human | Colorectum | FAP | 1.35e-04 | -8.35e-02 | 0.0135 |
55206 | SBNO1 | A002-C-016 | Human | Colorectum | FAP | 7.38e-10 | -1.58e-01 | 0.0521 |
55206 | SBNO1 | A015-C-002 | Human | Colorectum | FAP | 2.19e-06 | -2.01e-01 | -0.0763 |
55206 | SBNO1 | A002-C-116 | Human | Colorectum | FAP | 1.09e-15 | -1.20e-01 | -0.0452 |
55206 | SBNO1 | A014-C-008 | Human | Colorectum | FAP | 9.28e-06 | -1.01e-01 | -0.191 |
55206 | SBNO1 | A018-E-020 | Human | Colorectum | FAP | 1.79e-11 | -2.14e-01 | -0.2034 |
Page: 1 2 3 4 5 6 7 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
SBNO1 | SNV | Missense_Mutation | novel | c.3313N>C | p.Lys1105Gln | p.K1105Q | A3KN83 | protein_coding | deleterious(0.02) | probably_damaging(0.998) | TCGA-CA-6717-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Chemotherapy | oxaliplatin | CR |
SBNO1 | SNV | Missense_Mutation | c.4112N>G | p.Leu1371Arg | p.L1371R | A3KN83 | protein_coding | deleterious(0.05) | possibly_damaging(0.694) | TCGA-CA-6718-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | PD | |
SBNO1 | SNV | Missense_Mutation | c.480N>G | p.Asn160Lys | p.N160K | A3KN83 | protein_coding | tolerated_low_confidence(0.16) | benign(0.026) | TCGA-CA-6718-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | PD | |
SBNO1 | SNV | Missense_Mutation | rs778278323 | c.4177N>A | p.Ala1393Thr | p.A1393T | A3KN83 | protein_coding | deleterious_low_confidence(0.02) | benign(0) | TCGA-CK-5916-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
SBNO1 | SNV | Missense_Mutation | c.1939N>A | p.Gly647Arg | p.G647R | A3KN83 | protein_coding | deleterious(0.01) | probably_damaging(0.947) | TCGA-CM-4743-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Chemotherapy | capecitabine | SD | |
SBNO1 | SNV | Missense_Mutation | c.3452C>G | p.Ser1151Cys | p.S1151C | A3KN83 | protein_coding | deleterious(0.02) | possibly_damaging(0.628) | TCGA-D5-6926-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Chemotherapy | 5-fluorouracil | SD | |
SBNO1 | SNV | Missense_Mutation | c.1029N>T | p.Arg343Ser | p.R343S | A3KN83 | protein_coding | deleterious(0) | probably_damaging(0.988) | TCGA-AF-A56L-01 | Colorectum | rectum adenocarcinoma | Female | <65 | III/IV | Chemotherapy | oxaliplatin | CR | |
SBNO1 | SNV | Missense_Mutation | c.1711N>T | p.Arg571Trp | p.R571W | A3KN83 | protein_coding | deleterious(0.02) | benign(0.368) | TCGA-AG-3892-01 | Colorectum | rectum adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
SBNO1 | SNV | Missense_Mutation | novel | c.2078N>T | p.Ser693Leu | p.S693L | A3KN83 | protein_coding | tolerated(0.27) | benign(0.056) | TCGA-AG-A002-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
SBNO1 | SNV | Missense_Mutation | c.1000N>C | p.Ile334Leu | p.I334L | A3KN83 | protein_coding | tolerated(0.24) | benign(0.074) | TCGA-AG-A002-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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