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Gene: FAM134B |
Gene summary for FAM134B |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | FAM134B | Gene ID | 54463 |
| Gene name | reticulophagy regulator 1 | |
| Gene Alias | FAM134B | |
| Cytomap | 5p15.1 | |
| Gene Type | protein-coding | GO ID | GO:0000422 | UniProtAcc | Q9H6L5 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 54463 | FAM134B | HTA11_99999970781_79442 | Human | Colorectum | MSS | 1.49e-43 | 6.96e-01 | 0.294 |
| 54463 | FAM134B | HTA11_99999965062_69753 | Human | Colorectum | MSI-H | 7.89e-03 | 3.79e-01 | 0.3487 |
| 54463 | FAM134B | HTA11_99999965104_69814 | Human | Colorectum | MSS | 1.85e-32 | 9.08e-01 | 0.281 |
| 54463 | FAM134B | HTA11_99999971662_82457 | Human | Colorectum | MSS | 3.17e-28 | 5.45e-01 | 0.3859 |
| 54463 | FAM134B | HTA11_99999973899_84307 | Human | Colorectum | MSS | 3.35e-11 | 4.23e-01 | 0.2585 |
| 54463 | FAM134B | HTA11_99999974143_84620 | Human | Colorectum | MSS | 9.32e-10 | 2.13e-01 | 0.3005 |
| 54463 | FAM134B | P2T-E | Human | Esophagus | ESCC | 1.96e-05 | 1.32e-01 | 0.1177 |
| 54463 | FAM134B | P4T-E | Human | Esophagus | ESCC | 6.76e-15 | 4.63e-01 | 0.1323 |
| 54463 | FAM134B | P5T-E | Human | Esophagus | ESCC | 1.51e-09 | 1.53e-01 | 0.1327 |
| 54463 | FAM134B | P8T-E | Human | Esophagus | ESCC | 3.21e-06 | 8.27e-02 | 0.0889 |
| 54463 | FAM134B | P10T-E | Human | Esophagus | ESCC | 6.35e-10 | 2.53e-01 | 0.116 |
| 54463 | FAM134B | P11T-E | Human | Esophagus | ESCC | 5.08e-05 | 3.36e-01 | 0.1426 |
| 54463 | FAM134B | P12T-E | Human | Esophagus | ESCC | 1.05e-17 | 3.72e-01 | 0.1122 |
| 54463 | FAM134B | P22T-E | Human | Esophagus | ESCC | 1.08e-06 | 4.92e-02 | 0.1236 |
| 54463 | FAM134B | P26T-E | Human | Esophagus | ESCC | 1.26e-13 | 2.36e-01 | 0.1276 |
| 54463 | FAM134B | P28T-E | Human | Esophagus | ESCC | 5.05e-13 | 1.87e-01 | 0.1149 |
| 54463 | FAM134B | P32T-E | Human | Esophagus | ESCC | 1.35e-11 | 1.15e-01 | 0.1666 |
| 54463 | FAM134B | P37T-E | Human | Esophagus | ESCC | 2.22e-05 | 2.65e-02 | 0.1371 |
| 54463 | FAM134B | P39T-E | Human | Esophagus | ESCC | 2.17e-02 | 6.48e-03 | 0.0894 |
| 54463 | FAM134B | P40T-E | Human | Esophagus | ESCC | 3.81e-02 | 1.47e-01 | 0.109 |
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| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Prostate |  | BPH: Benign Prostatic Hyperplasia |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| FAM134B | SNV | Missense_Mutation | novel | c.451N>T | p.Ser151Cys | p.S151C | Q9H6L5 | protein_coding | deleterious(0.01) | possibly_damaging(0.657) | TCGA-64-5781-01 | Lung | lung adenocarcinoma | Female | <65 | I/II | Chemotherapy | cisplatin | PD |
| FAM134B | SNV | Missense_Mutation | novel | c.441G>T | p.Trp147Cys | p.W147C | Q9H6L5 | protein_coding | deleterious(0.04) | probably_damaging(0.999) | TCGA-85-A4JC-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Chemotherapy | unknown | PD |
| FAM134B | SNV | Missense_Mutation | c.1339A>G | p.Thr447Ala | p.T447A | Q9H6L5 | protein_coding | deleterious(0.04) | probably_damaging(0.985) | TCGA-EJ-5498-01 | Prostate | prostate adenocarcinoma | Male | <65 | 7 | Unknown | Unknown | SD | |
| FAM134B | SNV | Missense_Mutation | c.921C>G | p.Asp307Glu | p.D307E | Q9H6L5 | protein_coding | tolerated(1) | benign(0.251) | TCGA-BR-8683-01 | Stomach | stomach adenocarcinoma | Male | >=65 | III/IV | Unknown | Unknown | SD | |
| FAM134B | SNV | Missense_Mutation | novel | c.950G>T | p.Gly317Val | p.G317V | Q9H6L5 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-VQ-A8E3-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
| FAM134B | SNV | Missense_Mutation | novel | c.1438N>T | p.Ala480Ser | p.A480S | Q9H6L5 | protein_coding | tolerated(0.54) | benign(0.003) | TCGA-VQ-A8P2-01 | Stomach | stomach adenocarcinoma | Male | >=65 | III/IV | Unspecific | Complete Response | |
| FAM134B | SNV | Missense_Mutation | rs749712805 | c.364N>A | p.Val122Ile | p.V122I | Q9H6L5 | protein_coding | tolerated(0.52) | benign(0.011) | TCGA-VQ-A91D-01 | Stomach | stomach adenocarcinoma | Male | >=65 | III/IV | Chemotherapy | fluorouracil | PD |
| FAM134B | deletion | Frame_Shift_Del | novel | c.738delN | p.Lys247SerfsTer5 | p.K247Sfs*5 | Q9H6L5 | protein_coding | TCGA-VQ-A94R-01 | Stomach | stomach adenocarcinoma | Male | <65 | III/IV | Chemotherapy | fluorouracil | PD |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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