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Gene: CERK |
Gene summary for CERK |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | CERK | Gene ID | 64781 |
| Gene name | ceramide kinase | |
| Gene Alias | LK4 | |
| Cytomap | 22q13.31 | |
| Gene Type | protein-coding | GO ID | GO:0006629 | UniProtAcc | A0A024R4U8 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 64781 | CERK | HTA11_347_2000001011 | Human | Colorectum | AD | 3.05e-11 | 5.15e-01 | -0.1954 |
| 64781 | CERK | HTA11_99999970781_79442 | Human | Colorectum | MSS | 7.87e-05 | -2.08e-01 | 0.294 |
| 64781 | CERK | HTA11_99999971662_82457 | Human | Colorectum | MSS | 4.32e-07 | 4.04e-01 | 0.3859 |
| 64781 | CERK | F007 | Human | Colorectum | FAP | 4.03e-03 | -2.25e-01 | 0.1176 |
| 64781 | CERK | A002-C-010 | Human | Colorectum | FAP | 2.28e-03 | -2.08e-01 | 0.242 |
| 64781 | CERK | A015-C-203 | Human | Colorectum | FAP | 1.43e-03 | -1.09e-01 | -0.1294 |
| 64781 | CERK | A002-C-203 | Human | Colorectum | FAP | 9.48e-03 | -1.63e-01 | 0.2786 |
| 64781 | CERK | A002-C-205 | Human | Colorectum | FAP | 1.42e-03 | -1.55e-01 | -0.1236 |
| 64781 | CERK | A015-C-005 | Human | Colorectum | FAP | 1.07e-03 | -2.13e-01 | -0.0336 |
| 64781 | CERK | A015-C-006 | Human | Colorectum | FAP | 1.38e-04 | -2.25e-01 | -0.0994 |
| 64781 | CERK | A015-C-106 | Human | Colorectum | FAP | 7.00e-03 | -1.57e-01 | -0.0511 |
| 64781 | CERK | A002-C-114 | Human | Colorectum | FAP | 3.39e-04 | -2.07e-01 | -0.1561 |
| 64781 | CERK | A015-C-104 | Human | Colorectum | FAP | 1.51e-04 | -1.45e-01 | -0.1899 |
| 64781 | CERK | A002-C-016 | Human | Colorectum | FAP | 8.35e-05 | -1.87e-01 | 0.0521 |
| 64781 | CERK | A002-C-116 | Human | Colorectum | FAP | 4.50e-06 | -1.82e-01 | -0.0452 |
| 64781 | CERK | A014-C-008 | Human | Colorectum | FAP | 4.67e-02 | -2.05e-01 | -0.191 |
| 64781 | CERK | A018-E-020 | Human | Colorectum | FAP | 1.11e-02 | -1.45e-01 | -0.2034 |
| 64781 | CERK | F034 | Human | Colorectum | FAP | 9.10e-06 | -1.93e-01 | -0.0665 |
| 64781 | CERK | LZE7T | Human | Esophagus | ESCC | 1.06e-06 | 2.68e-01 | 0.0667 |
| 64781 | CERK | LZE24T | Human | Esophagus | ESCC | 6.00e-06 | 6.44e-02 | 0.0596 |
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| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:0030258 | Colorectum | AD | lipid modification | 67/3918 | 212/18723 | 1.66e-04 | 2.27e-03 | 67 |
| GO:00302582 | Colorectum | MSS | lipid modification | 57/3467 | 212/18723 | 1.64e-03 | 1.49e-02 | 57 |
| GO:00302583 | Colorectum | FAP | lipid modification | 52/2622 | 212/18723 | 2.84e-05 | 6.49e-04 | 52 |
| GO:00066433 | Esophagus | ESCC | membrane lipid metabolic process | 130/8552 | 203/18723 | 9.29e-08 | 1.54e-06 | 130 |
| GO:00066652 | Esophagus | ESCC | sphingolipid metabolic process | 96/8552 | 155/18723 | 3.21e-05 | 2.66e-04 | 96 |
| GO:00066642 | Esophagus | ESCC | glycolipid metabolic process | 63/8552 | 100/18723 | 3.55e-04 | 2.06e-03 | 63 |
| GO:19035092 | Esophagus | ESCC | liposaccharide metabolic process | 63/8552 | 101/18723 | 5.25e-04 | 2.90e-03 | 63 |
| GO:00066721 | Esophagus | ESCC | ceramide metabolic process | 61/8552 | 102/18723 | 2.82e-03 | 1.19e-02 | 61 |
| GO:00302586 | Esophagus | ESCC | lipid modification | 116/8552 | 212/18723 | 4.90e-03 | 1.89e-02 | 116 |
| GO:003025821 | Liver | HCC | lipid modification | 123/7958 | 212/18723 | 3.50e-06 | 4.58e-05 | 123 |
| GO:00066431 | Liver | HCC | membrane lipid metabolic process | 115/7958 | 203/18723 | 3.17e-05 | 3.22e-04 | 115 |
| GO:0006665 | Liver | HCC | sphingolipid metabolic process | 85/7958 | 155/18723 | 1.27e-03 | 6.92e-03 | 85 |
| GO:0006664 | Liver | HCC | glycolipid metabolic process | 57/7958 | 100/18723 | 2.40e-03 | 1.17e-02 | 57 |
| GO:1903509 | Liver | HCC | liposaccharide metabolic process | 57/7958 | 101/18723 | 3.25e-03 | 1.49e-02 | 57 |
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| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa006003 | Esophagus | ESCC | Sphingolipid metabolism | 36/4205 | 53/8465 | 5.41e-03 | 1.36e-02 | 6.99e-03 | 36 |
| hsa0060012 | Esophagus | ESCC | Sphingolipid metabolism | 36/4205 | 53/8465 | 5.41e-03 | 1.36e-02 | 6.99e-03 | 36 |
| hsa00600 | Liver | HCC | Sphingolipid metabolism | 34/4020 | 53/8465 | 1.06e-02 | 2.71e-02 | 1.51e-02 | 34 |
| hsa006001 | Liver | HCC | Sphingolipid metabolism | 34/4020 | 53/8465 | 1.06e-02 | 2.71e-02 | 1.51e-02 | 34 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| CERK | SNV | Missense_Mutation | novel | c.817T>C | p.Ser273Pro | p.S273P | Q8TCT0 | protein_coding | deleterious(0) | probably_damaging(0.976) | TCGA-22-1000-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
| CERK | SNV | Missense_Mutation | novel | c.1360N>G | p.Arg454Gly | p.R454G | Q8TCT0 | protein_coding | deleterious(0) | probably_damaging(0.953) | TCGA-22-1016-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
| CERK | SNV | Missense_Mutation | c.259C>T | p.His87Tyr | p.H87Y | Q8TCT0 | protein_coding | tolerated(0.95) | benign(0.007) | TCGA-39-5031-01 | Lung | lung squamous cell carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
| CERK | SNV | Missense_Mutation | c.1459C>A | p.His487Asn | p.H487N | Q8TCT0 | protein_coding | tolerated(0.22) | benign(0.001) | TCGA-43-3394-01 | Lung | lung squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | gemzar | PD | |
| CERK | SNV | Missense_Mutation | rs747446564 | c.1124N>T | p.Ala375Val | p.A375V | Q8TCT0 | protein_coding | tolerated(0.18) | benign(0.005) | TCGA-43-A475-01 | Lung | lung squamous cell carcinoma | Female | >=65 | I/II | Chemotherapy | cisplatin | CR |
| CERK | SNV | Missense_Mutation | novel | c.485N>G | p.Ser162Cys | p.S162C | Q8TCT0 | protein_coding | tolerated(0.12) | benign(0.014) | TCGA-52-7812-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Chemotherapy | paclitaxel | PD |
| CERK | SNV | Missense_Mutation | c.1228G>C | p.Ala410Pro | p.A410P | Q8TCT0 | protein_coding | deleterious(0.01) | benign(0.418) | TCGA-60-2719-01 | Lung | lung squamous cell carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
| CERK | SNV | Missense_Mutation | novel | c.1336G>A | p.Asp446Asn | p.D446N | Q8TCT0 | protein_coding | tolerated(0.06) | benign(0.034) | TCGA-63-A5MM-01 | Lung | lung squamous cell carcinoma | Female | >=65 | I/II | Chemotherapy | cisplatin | PD |
| CERK | SNV | Missense_Mutation | novel | c.668G>T | p.Arg223Leu | p.R223L | Q8TCT0 | protein_coding | tolerated(0.27) | benign(0.421) | TCGA-CN-6010-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | cisplatin | PD |
| CERK | SNV | Missense_Mutation | rs768926363 | c.694N>T | p.Arg232Trp | p.R232W | Q8TCT0 | protein_coding | deleterious(0) | probably_damaging(0.987) | TCGA-CV-7250-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Unknown | Unknown | PD |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| 64781 | CERK | KINASE, LIPID KINASE, ENZYME | inhibitor | 178103280 |
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