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Gene: BRINP1 |
Gene summary for BRINP1 |
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Gene information | Species | Human | Gene symbol | BRINP1 | Gene ID | 1620 |
Gene name | BMP/retinoic acid inducible neural specific 1 | |
Gene Alias | DBC1 | |
Cytomap | 9q33.1 | |
Gene Type | protein-coding | GO ID | GO:0000003 | UniProtAcc | O60477 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
1620 | BRINP1 | RNA-P3T-P3T-1 | Human | Lung | IAC | 1.19e-15 | 1.00e+00 | 0.1829 |
1620 | BRINP1 | RNA-P3T-P3T-2 | Human | Lung | IAC | 4.53e-15 | 9.84e-01 | 0.1835 |
1620 | BRINP1 | RNA-P3T-P3T-3 | Human | Lung | IAC | 4.38e-04 | 9.59e-01 | 0.1745 |
1620 | BRINP1 | RNA-P3T-P3T-4 | Human | Lung | IAC | 4.27e-23 | 1.21e+00 | 0.1859 |
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Tissue | Expression Dynamics | Abbreviation |
Lung | ![]() | AAH: Atypical adenomatous hyperplasia |
AIS: Adenocarcinoma in situ | ||
IAC: Invasive lung adenocarcinoma | ||
MIA: Minimally invasive adenocarcinoma |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00073464 | Lung | IAC | regulation of mitotic cell cycle | 78/2061 | 457/18723 | 5.37e-05 | 1.21e-03 | 78 |
GO:00457861 | Lung | IAC | negative regulation of cell cycle | 67/2061 | 385/18723 | 9.74e-05 | 1.93e-03 | 67 |
GO:00459301 | Lung | IAC | negative regulation of mitotic cell cycle | 45/2061 | 235/18723 | 1.49e-04 | 2.73e-03 | 45 |
GO:00507675 | Lung | IAC | regulation of neurogenesis | 57/2061 | 364/18723 | 3.92e-03 | 3.24e-02 | 57 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
BRINP1 | SNV | Missense_Mutation | rs1043377 | c.1309N>A | p.Ala437Thr | p.A437T | O60477 | protein_coding | tolerated(0.22) | probably_damaging(0.978) | TCGA-AA-3833-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
BRINP1 | SNV | Missense_Mutation | rs541291613 | c.2098C>T | p.Arg700Trp | p.R700W | O60477 | protein_coding | deleterious(0) | probably_damaging(0.973) | TCGA-AA-A010-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Chemotherapy | folinic | CR |
BRINP1 | SNV | Missense_Mutation | rs764143707 | c.646G>A | p.Val216Ile | p.V216I | O60477 | protein_coding | deleterious(0.02) | benign(0.001) | TCGA-AA-A01S-01 | Colorectum | colon adenocarcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
BRINP1 | SNV | Missense_Mutation | c.2048G>A | p.Gly683Asp | p.G683D | O60477 | protein_coding | deleterious(0) | benign(0.029) | TCGA-AA-A022-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
BRINP1 | SNV | Missense_Mutation | c.296C>T | p.Pro99Leu | p.P99L | O60477 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-AA-A022-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
BRINP1 | SNV | Missense_Mutation | c.2219N>C | p.His740Pro | p.H740P | O60477 | protein_coding | tolerated(0.1) | benign(0.013) | TCGA-AA-A02R-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD | |
BRINP1 | SNV | Missense_Mutation | novel | c.2105N>A | p.Arg702Gln | p.R702Q | O60477 | protein_coding | deleterious(0) | probably_damaging(0.953) | TCGA-AZ-4315-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
BRINP1 | SNV | Missense_Mutation | novel | c.1474N>A | p.Leu492Met | p.L492M | O60477 | protein_coding | deleterious(0.01) | probably_damaging(0.99) | TCGA-AZ-4315-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
BRINP1 | SNV | Missense_Mutation | rs148052034 | c.821N>T | p.Pro274Leu | p.P274L | O60477 | protein_coding | deleterious(0) | probably_damaging(0.982) | TCGA-AZ-4614-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
BRINP1 | SNV | Missense_Mutation | rs1043377 | c.1309N>A | p.Ala437Thr | p.A437T | O60477 | protein_coding | tolerated(0.22) | probably_damaging(0.978) | TCGA-AZ-6601-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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