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Gene: JMJD1C |
Gene summary for JMJD1C |
Gene summary. |
Gene information | Species | Human | Gene symbol | JMJD1C | Gene ID | 221037 |
Gene name | jumonji domain containing 1C | |
Gene Alias | KDM3C | |
Cytomap | 10q21.3 | |
Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | B7ZLC8 |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
221037 | JMJD1C | CA_HPV_1 | Human | Cervix | CC | 3.31e-03 | 8.58e-02 | 0.0264 |
221037 | JMJD1C | CCI_1 | Human | Cervix | CC | 8.79e-08 | 1.23e+00 | 0.528 |
221037 | JMJD1C | CCI_2 | Human | Cervix | CC | 1.50e-11 | 1.03e+00 | 0.5249 |
221037 | JMJD1C | CCI_3 | Human | Cervix | CC | 1.62e-11 | 9.77e-01 | 0.516 |
221037 | JMJD1C | Tumor | Human | Cervix | CC | 4.39e-02 | -1.84e-01 | 0.1241 |
221037 | JMJD1C | HTA11_3410_2000001011 | Human | Colorectum | AD | 4.39e-17 | -6.06e-01 | 0.0155 |
221037 | JMJD1C | HTA11_347_2000001011 | Human | Colorectum | AD | 2.51e-10 | 6.21e-01 | -0.1954 |
221037 | JMJD1C | HTA11_411_2000001011 | Human | Colorectum | SER | 1.63e-04 | 5.44e-01 | -0.2602 |
221037 | JMJD1C | HTA11_1391_2000001011 | Human | Colorectum | AD | 4.91e-02 | 4.12e-01 | -0.059 |
221037 | JMJD1C | HTA11_8622_2000001021 | Human | Colorectum | SER | 9.60e-07 | -6.45e-01 | 0.0528 |
221037 | JMJD1C | HTA11_7696_3000711011 | Human | Colorectum | AD | 4.75e-03 | -3.82e-01 | 0.0674 |
221037 | JMJD1C | HTA11_99999970781_79442 | Human | Colorectum | MSS | 6.68e-08 | -4.09e-01 | 0.294 |
221037 | JMJD1C | HTA11_99999965062_69753 | Human | Colorectum | MSI-H | 1.10e-09 | 8.87e-01 | 0.3487 |
221037 | JMJD1C | HTA11_99999965104_69814 | Human | Colorectum | MSS | 9.28e-03 | 3.70e-01 | 0.281 |
221037 | JMJD1C | HTA11_99999971662_82457 | Human | Colorectum | MSS | 3.04e-04 | -2.72e-01 | 0.3859 |
221037 | JMJD1C | HTA11_99999973899_84307 | Human | Colorectum | MSS | 1.36e-02 | -5.77e-01 | 0.2585 |
221037 | JMJD1C | HTA11_99999974143_84620 | Human | Colorectum | MSS | 1.88e-13 | -5.31e-01 | 0.3005 |
221037 | JMJD1C | A015-C-203 | Human | Colorectum | FAP | 8.33e-29 | -4.71e-01 | -0.1294 |
221037 | JMJD1C | A014-C-040 | Human | Colorectum | FAP | 8.29e-07 | -5.84e-01 | -0.1184 |
221037 | JMJD1C | A002-C-201 | Human | Colorectum | FAP | 6.88e-13 | -3.28e-01 | 0.0324 |
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Transcriptomic changes along malignancy continuum. |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:004206010 | Cervix | CC | wound healing | 109/2311 | 422/18723 | 1.84e-14 | 1.57e-11 | 109 |
GO:005087810 | Cervix | CC | regulation of body fluid levels | 78/2311 | 379/18723 | 3.20e-06 | 8.77e-05 | 78 |
GO:00165705 | Cervix | CC | histone modification | 84/2311 | 463/18723 | 1.70e-04 | 2.01e-03 | 84 |
GO:00508176 | Cervix | CC | coagulation | 45/2311 | 222/18723 | 5.08e-04 | 4.94e-03 | 45 |
GO:00075966 | Cervix | CC | blood coagulation | 44/2311 | 217/18723 | 5.78e-04 | 5.52e-03 | 44 |
GO:00075996 | Cervix | CC | hemostasis | 44/2311 | 222/18723 | 9.47e-04 | 7.95e-03 | 44 |
GO:0042060 | Colorectum | AD | wound healing | 128/3918 | 422/18723 | 2.73e-06 | 7.89e-05 | 128 |
GO:0050878 | Colorectum | AD | regulation of body fluid levels | 108/3918 | 379/18723 | 2.54e-04 | 3.20e-03 | 108 |
GO:00420601 | Colorectum | SER | wound healing | 97/2897 | 422/18723 | 2.69e-05 | 7.30e-04 | 97 |
GO:00508781 | Colorectum | SER | regulation of body fluid levels | 81/2897 | 379/18723 | 1.28e-03 | 1.43e-02 | 81 |
GO:00420602 | Colorectum | MSS | wound healing | 119/3467 | 422/18723 | 5.93e-07 | 2.24e-05 | 119 |
GO:00508782 | Colorectum | MSS | regulation of body fluid levels | 99/3467 | 379/18723 | 1.40e-04 | 2.07e-03 | 99 |
GO:0016570 | Colorectum | MSS | histone modification | 113/3467 | 463/18723 | 8.37e-04 | 8.68e-03 | 113 |
GO:00420603 | Colorectum | MSI-H | wound healing | 47/1319 | 422/18723 | 1.23e-03 | 2.00e-02 | 47 |
GO:00508783 | Colorectum | MSI-H | regulation of body fluid levels | 41/1319 | 379/18723 | 4.10e-03 | 4.67e-02 | 41 |
GO:00420604 | Colorectum | FAP | wound healing | 99/2622 | 422/18723 | 9.50e-08 | 6.33e-06 | 99 |
GO:00165701 | Colorectum | FAP | histone modification | 94/2622 | 463/18723 | 1.06e-04 | 1.76e-03 | 94 |
GO:00508784 | Colorectum | FAP | regulation of body fluid levels | 79/2622 | 379/18723 | 1.52e-04 | 2.35e-03 | 79 |
GO:004206016 | Endometrium | AEH | wound healing | 91/2100 | 422/18723 | 4.85e-10 | 4.61e-08 | 91 |
GO:00075967 | Endometrium | AEH | blood coagulation | 43/2100 | 217/18723 | 1.42e-04 | 1.89e-03 | 43 |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa05202 | Colorectum | FAP | Transcriptional misregulation in cancer | 45/1404 | 193/8465 | 9.19e-03 | 3.33e-02 | 2.03e-02 | 45 |
hsa052021 | Colorectum | FAP | Transcriptional misregulation in cancer | 45/1404 | 193/8465 | 9.19e-03 | 3.33e-02 | 2.03e-02 | 45 |
hsa052028 | Esophagus | ESCC | Transcriptional misregulation in cancer | 116/4205 | 193/8465 | 2.08e-03 | 5.95e-03 | 3.05e-03 | 116 |
hsa0520213 | Esophagus | ESCC | Transcriptional misregulation in cancer | 116/4205 | 193/8465 | 2.08e-03 | 5.95e-03 | 3.05e-03 | 116 |
hsa052026 | Lung | IAC | Transcriptional misregulation in cancer | 40/1053 | 193/8465 | 6.90e-04 | 5.90e-03 | 3.92e-03 | 40 |
hsa0520211 | Lung | IAC | Transcriptional misregulation in cancer | 40/1053 | 193/8465 | 6.90e-04 | 5.90e-03 | 3.92e-03 | 40 |
hsa052024 | Lung | MIAC | Transcriptional misregulation in cancer | 22/507 | 193/8465 | 2.64e-03 | 2.26e-02 | 1.64e-02 | 22 |
hsa052025 | Lung | MIAC | Transcriptional misregulation in cancer | 22/507 | 193/8465 | 2.64e-03 | 2.26e-02 | 1.64e-02 | 22 |
hsa052027 | Prostate | BPH | Transcriptional misregulation in cancer | 53/1718 | 193/8465 | 9.56e-03 | 2.92e-02 | 1.81e-02 | 53 |
hsa0520212 | Prostate | BPH | Transcriptional misregulation in cancer | 53/1718 | 193/8465 | 9.56e-03 | 2.92e-02 | 1.81e-02 | 53 |
hsa0520221 | Prostate | Tumor | Transcriptional misregulation in cancer | 59/1791 | 193/8465 | 1.22e-03 | 5.26e-03 | 3.26e-03 | 59 |
hsa0520231 | Prostate | Tumor | Transcriptional misregulation in cancer | 59/1791 | 193/8465 | 1.22e-03 | 5.26e-03 | 3.26e-03 | 59 |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
JMJD1C | SNV | Missense_Mutation | novel | c.500N>G | p.Glu167Gly | p.E167G | Q15652 | protein_coding | deleterious(0) | benign(0.115) | TCGA-VQ-A8PO-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
JMJD1C | SNV | Missense_Mutation | novel | c.5272N>G | p.Arg1758Gly | p.R1758G | Q15652 | protein_coding | deleterious(0) | probably_damaging(0.997) | TCGA-VQ-AA6D-01 | Stomach | stomach adenocarcinoma | Female | <65 | III/IV | Chemotherapy | fluorouracil | CR |
JMJD1C | deletion | Frame_Shift_Del | novel | c.4451delA | p.Lys1484SerfsTer24 | p.K1484Sfs*24 | Q15652 | protein_coding | TCGA-BR-4362-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
JMJD1C | deletion | Frame_Shift_Del | c.4526delN | p.Asn1509IlefsTer14 | p.N1509Ifs*14 | Q15652 | protein_coding | TCGA-BR-8372-01 | Stomach | stomach adenocarcinoma | Male | <65 | III/IV | Chemotherapy | etoposide | CR | |||
JMJD1C | insertion | Frame_Shift_Ins | novel | c.3598_3599insAAATT | p.Met1200LysfsTer35 | p.M1200Kfs*35 | Q15652 | protein_coding | TCGA-BR-8677-01 | Stomach | stomach adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD | ||
JMJD1C | deletion | Frame_Shift_Del | c.6075delN | p.Glu2026LysfsTer45 | p.E2026Kfs*45 | Q15652 | protein_coding | TCGA-CG-4460-01 | Stomach | stomach adenocarcinoma | Female | >=65 | III/IV | Chemotherapy | capecitabine | PD | |||
JMJD1C | deletion | Frame_Shift_Del | novel | c.5223delN | p.Gly1742GlufsTer26 | p.G1742Efs*26 | Q15652 | protein_coding | TCGA-CG-4460-01 | Stomach | stomach adenocarcinoma | Female | >=65 | III/IV | Chemotherapy | capecitabine | PD | ||
JMJD1C | deletion | Frame_Shift_Del | novel | c.2930delN | p.Asn977MetfsTer5 | p.N977Mfs*5 | Q15652 | protein_coding | TCGA-CG-4460-01 | Stomach | stomach adenocarcinoma | Female | >=65 | III/IV | Chemotherapy | capecitabine | PD | ||
JMJD1C | insertion | Frame_Shift_Ins | novel | c.4526_4527insA | p.Asn1509LysfsTer12 | p.N1509Kfs*12 | Q15652 | protein_coding | TCGA-D7-A4YY-01 | Stomach | stomach adenocarcinoma | Male | <65 | III/IV | Chemotherapy | 5-fluorouracil | SD | ||
JMJD1C | deletion | Frame_Shift_Del | c.6075delN | p.Glu2026LysfsTer45 | p.E2026Kfs*45 | Q15652 | protein_coding | TCGA-FP-A4BE-01 | Stomach | stomach adenocarcinoma | Male | <65 | I/II | Chemotherapy | 5-fluorouracil | CR |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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