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Gene: TMEM164 |
Gene summary for TMEM164 |
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Gene information | Species | Human | Gene symbol | TMEM164 | Gene ID | 84187 |
Gene name | transmembrane protein 164 | |
Gene Alias | bB360B22.3 | |
Cytomap | Xq23 | |
Gene Type | protein-coding | GO ID | GO:0005575 | UniProtAcc | Q5U3C3 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
84187 | TMEM164 | HTA11_3410_2000001011 | Human | Colorectum | AD | 1.76e-09 | -3.14e-01 | 0.0155 |
84187 | TMEM164 | HTA11_347_2000001011 | Human | Colorectum | AD | 9.91e-05 | 5.58e-01 | -0.1954 |
84187 | TMEM164 | A015-C-203 | Human | Colorectum | FAP | 9.16e-22 | -4.37e-01 | -0.1294 |
84187 | TMEM164 | A015-C-204 | Human | Colorectum | FAP | 4.38e-03 | -2.79e-01 | -0.0228 |
84187 | TMEM164 | A014-C-040 | Human | Colorectum | FAP | 4.37e-02 | -3.77e-01 | -0.1184 |
84187 | TMEM164 | A002-C-201 | Human | Colorectum | FAP | 1.42e-09 | -3.28e-01 | 0.0324 |
84187 | TMEM164 | A002-C-203 | Human | Colorectum | FAP | 3.09e-06 | -2.56e-01 | 0.2786 |
84187 | TMEM164 | A001-C-119 | Human | Colorectum | FAP | 1.51e-05 | -4.25e-01 | -0.1557 |
84187 | TMEM164 | A001-C-108 | Human | Colorectum | FAP | 9.61e-16 | -3.86e-01 | -0.0272 |
84187 | TMEM164 | A002-C-205 | Human | Colorectum | FAP | 2.69e-18 | -4.72e-01 | -0.1236 |
84187 | TMEM164 | A001-C-104 | Human | Colorectum | FAP | 1.33e-07 | -3.44e-01 | 0.0184 |
84187 | TMEM164 | A015-C-005 | Human | Colorectum | FAP | 1.62e-02 | -2.85e-01 | -0.0336 |
84187 | TMEM164 | A015-C-006 | Human | Colorectum | FAP | 4.67e-12 | -4.36e-01 | -0.0994 |
84187 | TMEM164 | A015-C-106 | Human | Colorectum | FAP | 3.04e-16 | -4.53e-01 | -0.0511 |
84187 | TMEM164 | A002-C-114 | Human | Colorectum | FAP | 6.04e-17 | -5.50e-01 | -0.1561 |
84187 | TMEM164 | A015-C-104 | Human | Colorectum | FAP | 2.93e-20 | -4.64e-01 | -0.1899 |
84187 | TMEM164 | A001-C-014 | Human | Colorectum | FAP | 5.59e-14 | -3.50e-01 | 0.0135 |
84187 | TMEM164 | A002-C-016 | Human | Colorectum | FAP | 3.89e-13 | -3.41e-01 | 0.0521 |
84187 | TMEM164 | A015-C-002 | Human | Colorectum | FAP | 4.36e-09 | -4.00e-01 | -0.0763 |
84187 | TMEM164 | A001-C-203 | Human | Colorectum | FAP | 3.94e-06 | -2.39e-01 | -0.0481 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
TMEM164 | SNV | Missense_Mutation | novel | c.519A>C | p.Glu173Asp | p.E173D | Q5U3C3 | protein_coding | tolerated(0.1) | probably_damaging(0.993) | TCGA-EO-A3AY-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | PD |
TMEM164 | SNV | Missense_Mutation | novel | c.88G>T | p.Ala30Ser | p.A30S | Q5U3C3 | protein_coding | tolerated(0.22) | benign(0.223) | TCGA-49-AARO-01 | Lung | lung adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | PD |
TMEM164 | SNV | Missense_Mutation | c.586G>T | p.Gly196Cys | p.G196C | Q5U3C3 | protein_coding | deleterious(0) | probably_damaging(0.998) | TCGA-50-5941-01 | Lung | lung adenocarcinoma | Female | <65 | III/IV | Unspecific | Cisplatin | Complete Response | |
TMEM164 | SNV | Missense_Mutation | c.658C>T | p.His220Tyr | p.H220Y | Q5U3C3 | protein_coding | deleterious(0.03) | probably_damaging(0.984) | TCGA-18-3409-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
TMEM164 | SNV | Missense_Mutation | c.560T>C | p.Val187Ala | p.V187A | Q5U3C3 | protein_coding | deleterious(0) | possibly_damaging(0.879) | TCGA-37-4141-01 | Lung | lung squamous cell carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
TMEM164 | SNV | Missense_Mutation | novel | c.805N>G | p.Lys269Glu | p.K269E | Q5U3C3 | protein_coding | deleterious(0) | probably_damaging(0.971) | TCGA-L3-A524-01 | Lung | lung squamous cell carcinoma | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
TMEM164 | deletion | In_Frame_Del | novel | c.5_16delCCCGGTATAGCT | p.Ser2_Ser5del | p.S2_S5del | Q5U3C3 | protein_coding | TCGA-63-A5ML-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Chemotherapy | vinorelbine | SD | ||
TMEM164 | SNV | Missense_Mutation | novel | c.418C>T | p.Arg140Trp | p.R140W | Q5U3C3 | protein_coding | deleterious(0.01) | benign(0.001) | TCGA-CR-6473-01 | Oral cavity | head & neck squamous cell carcinoma | Male | >=65 | I/II | Chemotherapy | paclitaxel | SD |
TMEM164 | SNV | Missense_Mutation | c.305C>A | p.Thr102Asn | p.T102N | Q5U3C3 | protein_coding | deleterious(0.01) | possibly_damaging(0.651) | TCGA-CV-A45T-01 | Oral cavity | head & neck squamous cell carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
TMEM164 | insertion | In_Frame_Ins | novel | c.303_304insCAA | p.Leu101_Thr102insGln | p.L101_T102insQ | Q5U3C3 | protein_coding | TCGA-CV-A45T-01 | Oral cavity | head & neck squamous cell carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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