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Gene: NT5DC1 |
Gene summary for NT5DC1 |
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Gene information | Species | Human | Gene symbol | NT5DC1 | Gene ID | 221294 |
Gene name | 5'-nucleotidase domain containing 1 | |
Gene Alias | C6orf200 | |
Cytomap | 6q22.1 | |
Gene Type | protein-coding | GO ID | GO:0006793 | UniProtAcc | Q5TFE4 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
221294 | NT5DC1 | LZE4T | Human | Esophagus | ESCC | 6.95e-18 | 3.20e-01 | 0.0811 |
221294 | NT5DC1 | LZE7T | Human | Esophagus | ESCC | 1.49e-06 | 1.38e-01 | 0.0667 |
221294 | NT5DC1 | LZE8T | Human | Esophagus | ESCC | 9.23e-14 | 2.70e-01 | 0.067 |
221294 | NT5DC1 | LZE20T | Human | Esophagus | ESCC | 1.14e-04 | 1.26e-01 | 0.0662 |
221294 | NT5DC1 | LZE24T | Human | Esophagus | ESCC | 8.69e-15 | 4.47e-01 | 0.0596 |
221294 | NT5DC1 | P1T-E | Human | Esophagus | ESCC | 3.47e-05 | 3.02e-01 | 0.0875 |
221294 | NT5DC1 | P2T-E | Human | Esophagus | ESCC | 9.64e-55 | 9.35e-01 | 0.1177 |
221294 | NT5DC1 | P4T-E | Human | Esophagus | ESCC | 7.22e-25 | 6.27e-01 | 0.1323 |
221294 | NT5DC1 | P5T-E | Human | Esophagus | ESCC | 7.53e-14 | 2.77e-01 | 0.1327 |
221294 | NT5DC1 | P8T-E | Human | Esophagus | ESCC | 6.72e-13 | 1.52e-01 | 0.0889 |
221294 | NT5DC1 | P9T-E | Human | Esophagus | ESCC | 6.61e-17 | 1.01e-01 | 0.1131 |
221294 | NT5DC1 | P10T-E | Human | Esophagus | ESCC | 3.23e-27 | 4.36e-01 | 0.116 |
221294 | NT5DC1 | P11T-E | Human | Esophagus | ESCC | 1.54e-12 | 2.17e-01 | 0.1426 |
221294 | NT5DC1 | P12T-E | Human | Esophagus | ESCC | 1.23e-46 | 9.18e-01 | 0.1122 |
221294 | NT5DC1 | P15T-E | Human | Esophagus | ESCC | 1.24e-38 | 9.48e-01 | 0.1149 |
221294 | NT5DC1 | P16T-E | Human | Esophagus | ESCC | 1.40e-33 | 6.13e-01 | 0.1153 |
221294 | NT5DC1 | P17T-E | Human | Esophagus | ESCC | 2.66e-10 | 4.27e-01 | 0.1278 |
221294 | NT5DC1 | P20T-E | Human | Esophagus | ESCC | 6.26e-24 | 3.73e-01 | 0.1124 |
221294 | NT5DC1 | P21T-E | Human | Esophagus | ESCC | 3.75e-51 | 8.91e-01 | 0.1617 |
221294 | NT5DC1 | P22T-E | Human | Esophagus | ESCC | 6.57e-20 | 2.75e-01 | 0.1236 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:001631110 | Esophagus | ESCC | dephosphorylation | 251/8552 | 417/18723 | 1.26e-09 | 2.99e-08 | 251 |
GO:00163115 | Liver | NAFLD | dephosphorylation | 69/1882 | 417/18723 | 2.27e-05 | 6.23e-04 | 69 |
GO:001631111 | Liver | Cirrhotic | dephosphorylation | 130/4634 | 417/18723 | 1.58e-03 | 1.03e-02 | 130 |
GO:001631121 | Liver | HCC | dephosphorylation | 230/7958 | 417/18723 | 1.00e-07 | 1.96e-06 | 230 |
GO:00163116 | Lung | IAC | dephosphorylation | 75/2061 | 417/18723 | 1.21e-05 | 3.64e-04 | 75 |
GO:001631112 | Lung | AIS | dephosphorylation | 69/1849 | 417/18723 | 1.27e-05 | 4.78e-04 | 69 |
GO:00163119 | Oral cavity | OSCC | dephosphorylation | 220/7305 | 417/18723 | 6.33e-09 | 1.34e-07 | 220 |
GO:00163118 | Prostate | BPH | dephosphorylation | 98/3107 | 417/18723 | 1.53e-04 | 1.35e-03 | 98 |
GO:001631113 | Prostate | Tumor | dephosphorylation | 98/3246 | 417/18723 | 7.31e-04 | 5.08e-03 | 98 |
GO:001631115 | Skin | cSCC | dephosphorylation | 134/4864 | 417/18723 | 2.65e-03 | 1.50e-02 | 134 |
GO:001631116 | Thyroid | PTC | dephosphorylation | 174/5968 | 417/18723 | 1.20e-05 | 1.31e-04 | 174 |
GO:001631117 | Thyroid | ATC | dephosphorylation | 179/6293 | 417/18723 | 3.88e-05 | 3.15e-04 | 179 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
NT5DC1 | SNV | Missense_Mutation | novel | c.122N>G | p.Leu41Arg | p.L41R | Q5TFE4 | protein_coding | deleterious(0) | probably_damaging(0.978) | TCGA-CC-A8HU-01 | Liver | liver hepatocellular carcinoma | Female | <65 | III/IV | Unknown | Unknown | PD |
NT5DC1 | SNV | Missense_Mutation | c.292N>T | p.Val98Leu | p.V98L | Q5TFE4 | protein_coding | deleterious(0.03) | benign(0.011) | TCGA-44-7661-01 | Lung | lung adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD | |
NT5DC1 | SNV | Missense_Mutation | c.279G>T | p.Met93Ile | p.M93I | Q5TFE4 | protein_coding | tolerated(0.34) | benign(0.359) | TCGA-75-6214-01 | Lung | lung adenocarcinoma | Female | Unknown | III/IV | Unknown | Unknown | PD | |
NT5DC1 | SNV | Missense_Mutation | novel | c.230A>C | p.Lys77Thr | p.K77T | Q5TFE4 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-78-7161-01 | Lung | lung adenocarcinoma | Female | >=65 | I/II | Chemotherapy | cisplatin | PD |
NT5DC1 | SNV | Missense_Mutation | novel | c.41G>A | p.Gly14Glu | p.G14E | Q5TFE4 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-56-A5DR-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
NT5DC1 | SNV | Missense_Mutation | rs200437402 | c.304G>T | p.Ala102Ser | p.A102S | Q5TFE4 | protein_coding | tolerated(0.76) | benign(0.079) | TCGA-56-A5DR-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
NT5DC1 | SNV | Missense_Mutation | c.1345N>C | p.Asp449His | p.D449H | Q5TFE4 | protein_coding | tolerated(0.06) | benign(0.063) | TCGA-60-2698-01 | Lung | lung squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | mithramycin | PD | |
NT5DC1 | deletion | Frame_Shift_Del | novel | c.127delN | p.Lys43ArgfsTer12 | p.K43Rfs*12 | Q5TFE4 | protein_coding | TCGA-86-8673-01 | Lung | lung adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | PD | ||
NT5DC1 | SNV | Missense_Mutation | novel | c.82N>C | p.Glu28Gln | p.E28Q | Q5TFE4 | protein_coding | tolerated(0.05) | benign(0.047) | TCGA-P3-A6T5-01 | Oral cavity | head & neck squamous cell carcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
NT5DC1 | insertion | Frame_Shift_Ins | novel | c.185_185+1insCA | p.Cys63IlefsTer9 | p.C63Ifs*9 | Q5TFE4 | protein_coding | TCGA-HD-8635-01 | Oral cavity | head & neck squamous cell carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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