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Gene: BEND6 |
Gene summary for BEND6 |
Gene summary. |
Gene information | Species | Human | Gene symbol | BEND6 | Gene ID | 221336 |
Gene name | BEN domain containing 6 | |
Gene Alias | C6orf65 | |
Cytomap | 6p12.1 | |
Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | Q5SZJ8 |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
221336 | BEND6 | P2T-E | Human | Esophagus | ESCC | 1.66e-02 | 9.22e-02 | 0.1177 |
221336 | BEND6 | P4T-E | Human | Esophagus | ESCC | 2.81e-07 | 2.03e-01 | 0.1323 |
221336 | BEND6 | P9T-E | Human | Esophagus | ESCC | 8.38e-03 | 1.01e-01 | 0.1131 |
221336 | BEND6 | P10T-E | Human | Esophagus | ESCC | 8.56e-12 | 2.17e-01 | 0.116 |
221336 | BEND6 | P11T-E | Human | Esophagus | ESCC | 9.07e-04 | 1.62e-01 | 0.1426 |
221336 | BEND6 | P15T-E | Human | Esophagus | ESCC | 5.26e-03 | 9.91e-02 | 0.1149 |
221336 | BEND6 | P21T-E | Human | Esophagus | ESCC | 4.30e-10 | 1.95e-01 | 0.1617 |
221336 | BEND6 | P22T-E | Human | Esophagus | ESCC | 7.90e-03 | 8.94e-02 | 0.1236 |
221336 | BEND6 | P26T-E | Human | Esophagus | ESCC | 9.53e-09 | 1.63e-01 | 0.1276 |
221336 | BEND6 | P27T-E | Human | Esophagus | ESCC | 1.96e-05 | 1.21e-01 | 0.1055 |
221336 | BEND6 | P28T-E | Human | Esophagus | ESCC | 1.88e-04 | 1.20e-01 | 0.1149 |
221336 | BEND6 | P31T-E | Human | Esophagus | ESCC | 7.90e-03 | 1.01e-01 | 0.1251 |
221336 | BEND6 | P32T-E | Human | Esophagus | ESCC | 8.40e-04 | 1.03e-01 | 0.1666 |
221336 | BEND6 | P37T-E | Human | Esophagus | ESCC | 2.47e-11 | 2.66e-01 | 0.1371 |
221336 | BEND6 | P40T-E | Human | Esophagus | ESCC | 6.35e-03 | 1.83e-01 | 0.109 |
221336 | BEND6 | P44T-E | Human | Esophagus | ESCC | 6.93e-04 | 1.56e-01 | 0.1096 |
221336 | BEND6 | P49T-E | Human | Esophagus | ESCC | 5.57e-05 | 7.21e-01 | 0.1768 |
221336 | BEND6 | P52T-E | Human | Esophagus | ESCC | 3.89e-12 | 2.49e-01 | 0.1555 |
221336 | BEND6 | P56T-E | Human | Esophagus | ESCC | 6.66e-05 | 4.55e-01 | 0.1613 |
221336 | BEND6 | P61T-E | Human | Esophagus | ESCC | 6.37e-05 | 1.56e-01 | 0.099 |
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Transcriptomic changes along malignancy continuum. |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00072197 | Esophagus | ESCC | Notch signaling pathway | 106/8552 | 172/18723 | 1.74e-05 | 1.55e-04 | 106 |
GO:0045746 | Esophagus | ESCC | negative regulation of Notch signaling pathway | 28/8552 | 36/18723 | 8.62e-05 | 6.22e-04 | 28 |
GO:00085935 | Esophagus | ESCC | regulation of Notch signaling pathway | 59/8552 | 95/18723 | 9.12e-04 | 4.65e-03 | 59 |
GO:000721915 | Thyroid | ATC | Notch signaling pathway | 79/6293 | 172/18723 | 5.08e-04 | 2.96e-03 | 79 |
GO:00085937 | Thyroid | ATC | regulation of Notch signaling pathway | 43/6293 | 95/18723 | 1.19e-02 | 4.22e-02 | 43 |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
BEND6 | SNV | Missense_Mutation | novel | c.105N>A | p.Asp35Glu | p.D35E | Q5SZJ8 | protein_coding | tolerated_low_confidence(0.35) | benign(0) | TCGA-44-5644-01 | Lung | lung adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
BEND6 | SNV | Missense_Mutation | novel | c.62G>A | p.Arg21Lys | p.R21K | Q5SZJ8 | protein_coding | deleterious_low_confidence(0) | benign(0.062) | TCGA-53-A4EZ-01 | Lung | lung adenocarcinoma | Male | <65 | I/II | Chemotherapy | cisplatin | CR |
BEND6 | SNV | Missense_Mutation | c.539A>T | p.Gln180Leu | p.Q180L | Q5SZJ8 | protein_coding | tolerated(0.32) | probably_damaging(0.932) | TCGA-55-8302-01 | Lung | lung adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
BEND6 | SNV | Missense_Mutation | c.108G>A | p.Met36Ile | p.M36I | Q5SZJ8 | protein_coding | tolerated_low_confidence(0.33) | benign(0) | TCGA-78-7542-01 | Lung | lung adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
BEND6 | SNV | Missense_Mutation | c.291G>T | p.Met97Ile | p.M97I | Q5SZJ8 | protein_coding | tolerated_low_confidence(0.14) | benign(0.054) | TCGA-86-A4JF-01 | Lung | lung adenocarcinoma | Male | <65 | I/II | Chemotherapy | unknown | PD | |
BEND6 | SNV | Missense_Mutation | c.283N>A | p.Leu95Met | p.L95M | Q5SZJ8 | protein_coding | deleterious_low_confidence(0.01) | probably_damaging(0.994) | TCGA-91-6828-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
BEND6 | SNV | Missense_Mutation | c.452N>T | p.Ser151Phe | p.S151F | Q5SZJ8 | protein_coding | deleterious(0) | probably_damaging(0.962) | TCGA-97-7554-01 | Lung | lung adenocarcinoma | Female | >=65 | III/IV | Chemotherapy | alimta | SD | |
BEND6 | SNV | Missense_Mutation | c.464N>G | p.Ser155Cys | p.S155C | Q5SZJ8 | protein_coding | deleterious_low_confidence(0.04) | possibly_damaging(0.62) | TCGA-MP-A4SV-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
BEND6 | SNV | Missense_Mutation | c.24T>A | p.Asp8Glu | p.D8E | Q5SZJ8 | protein_coding | tolerated_low_confidence(0.14) | benign(0.001) | TCGA-NJ-A4YI-01 | Lung | lung adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD | |
BEND6 | SNV | Missense_Mutation | novel | c.22N>C | p.Asp8His | p.D8H | Q5SZJ8 | protein_coding | deleterious_low_confidence(0) | possibly_damaging(0.456) | TCGA-22-4594-01 | Lung | lung squamous cell carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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