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Gene: ATP6V0A4 |
Gene summary for ATP6V0A4 |
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Gene information | Species | Human | Gene symbol | ATP6V0A4 | Gene ID | 50617 |
Gene name | ATPase H+ transporting V0 subunit a4 | |
Gene Alias | A4 | |
Cytomap | 7q34 | |
Gene Type | protein-coding | GO ID | GO:0001503 | UniProtAcc | A0A024R791 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
50617 | ATP6V0A4 | RNA-P6T2-P6T2-1 | Human | Lung | IAC | 1.04e-20 | 6.71e-01 | -0.0166 |
50617 | ATP6V0A4 | RNA-P6T2-P6T2-2 | Human | Lung | IAC | 3.02e-23 | 7.02e-01 | -0.0132 |
50617 | ATP6V0A4 | RNA-P6T2-P6T2-3 | Human | Lung | IAC | 2.59e-26 | 7.42e-01 | -0.013 |
50617 | ATP6V0A4 | RNA-P6T2-P6T2-4 | Human | Lung | IAC | 7.00e-18 | 6.40e-01 | -0.0121 |
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Tissue | Expression Dynamics | Abbreviation |
Lung | ![]() | AAH: Atypical adenomatous hyperplasia |
AIS: Adenocarcinoma in situ | ||
IAC: Invasive lung adenocarcinoma | ||
MIA: Minimally invasive adenocarcinoma |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa051656 | Lung | IAC | Human papillomavirus infection | 71/1053 | 331/8465 | 1.88e-06 | 7.63e-05 | 5.06e-05 | 71 |
hsa0516511 | Lung | IAC | Human papillomavirus infection | 71/1053 | 331/8465 | 1.88e-06 | 7.63e-05 | 5.06e-05 | 71 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
ATP6V0A4 | SNV | Missense_Mutation | c.1732N>A | p.Pro578Thr | p.P578T | Q9HBG4 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-CK-4950-01 | Colorectum | colon adenocarcinoma | Female | >=65 | III/IV | Chemotherapy | folfox | SD | |
ATP6V0A4 | SNV | Missense_Mutation | c.1346N>A | p.Arg449His | p.R449H | Q9HBG4 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-CK-6746-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
ATP6V0A4 | SNV | Missense_Mutation | c.1219N>A | p.Val407Met | p.V407M | Q9HBG4 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-CK-6746-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
ATP6V0A4 | SNV | Missense_Mutation | novel | c.1684N>G | p.Asn562Asp | p.N562D | Q9HBG4 | protein_coding | deleterious(0.01) | probably_damaging(0.999) | TCGA-D5-6530-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
ATP6V0A4 | SNV | Missense_Mutation | c.1631C>T | p.Ser544Leu | p.S544L | Q9HBG4 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-G4-6309-01 | Colorectum | colon adenocarcinoma | Female | <65 | III/IV | Chemotherapy | xeloda | PD | |
ATP6V0A4 | SNV | Missense_Mutation | novel | c.1663N>A | p.Gly555Ser | p.G555S | Q9HBG4 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-QG-A5Z2-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
ATP6V0A4 | SNV | Missense_Mutation | c.1996C>T | p.His666Tyr | p.H666Y | Q9HBG4 | protein_coding | tolerated(0.32) | possibly_damaging(0.75) | TCGA-AG-3725-01 | Colorectum | rectum adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD | |
ATP6V0A4 | SNV | Missense_Mutation | rs867752659 | c.421G>A | p.Glu141Lys | p.E141K | Q9HBG4 | protein_coding | tolerated(0.16) | benign(0.026) | TCGA-AG-A002-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
ATP6V0A4 | SNV | Missense_Mutation | c.1381N>C | p.Tyr461His | p.Y461H | Q9HBG4 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-EI-6882-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
ATP6V0A4 | SNV | Missense_Mutation | rs770052600 | c.2227N>T | p.Arg743Trp | p.R743W | Q9HBG4 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-EI-7002-01 | Colorectum | rectum adenocarcinoma | Male | <65 | III/IV | Chemotherapy | irinotecan+5-fluorouracilim | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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