Tissue | Expression Dynamics | Abbreviation |
Esophagus | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Esophagus/MGMT_pca_on_diff_genes.png) | ESCC: Esophageal squamous cell carcinoma |
HGIN: High-grade intraepithelial neoplasias |
LGIN: Low-grade intraepithelial neoplasias |
GC | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/GC/MGMT_pca_on_diff_genes.png) | CAG: Chronic atrophic gastritis |
CAG with IM: Chronic atrophic gastritis with intestinal metaplasia |
CSG: Chronic superficial gastritis |
GC: Gastric cancer |
SIM: Severe intestinal metaplasia |
WIM: Wild intestinal metaplasia |
Liver | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Liver/MGMT_pca_on_diff_genes.png) | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
Oral Cavity | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/OralCavity/MGMT_pca_on_diff_genes.png) | EOLP: Erosive Oral lichen planus |
LP: leukoplakia |
NEOLP: Non-erosive oral lichen planus |
OSCC: Oral squamous cell carcinoma |
Skin | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Skin/MGMT_pca_on_diff_genes.png) | AK: Actinic keratosis |
cSCC: Cutaneous squamous cell carcinoma |
SCCIS:squamous cell carcinoma in situ |
Thyroid | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Thyroid/MGMT_pca_on_diff_genes.png) | ATC: Anaplastic thyroid cancer |
HT: Hashimoto's thyroiditis |
PTC: Papillary thyroid cancer |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0006979111 | Esophagus | ESCC | response to oxidative stress | 303/8552 | 446/18723 | 7.15e-22 | 1.30e-19 | 303 |
GO:0062197111 | Esophagus | ESCC | cellular response to chemical stress | 234/8552 | 337/18723 | 5.37e-19 | 5.97e-17 | 234 |
GO:0034599111 | Esophagus | ESCC | cellular response to oxidative stress | 197/8552 | 288/18723 | 3.76e-15 | 2.15e-13 | 197 |
GO:005105215 | Esophagus | ESCC | regulation of DNA metabolic process | 232/8552 | 359/18723 | 2.40e-13 | 1.13e-11 | 232 |
GO:001021217 | Esophagus | ESCC | response to ionizing radiation | 110/8552 | 148/18723 | 1.11e-12 | 4.78e-11 | 110 |
GO:0048732111 | Esophagus | ESCC | gland development | 269/8552 | 436/18723 | 7.81e-12 | 2.95e-10 | 269 |
GO:0031667111 | Esophagus | ESCC | response to nutrient levels | 289/8552 | 474/18723 | 9.25e-12 | 3.47e-10 | 289 |
GO:005105417 | Esophagus | ESCC | positive regulation of DNA metabolic process | 139/8552 | 201/18723 | 1.20e-11 | 4.33e-10 | 139 |
GO:2000116111 | Esophagus | ESCC | regulation of cysteine-type endopeptidase activity | 158/8552 | 235/18723 | 1.67e-11 | 5.90e-10 | 158 |
GO:0043281111 | Esophagus | ESCC | regulation of cysteine-type endopeptidase activity involved in apoptotic process | 143/8552 | 209/18723 | 2.12e-11 | 7.31e-10 | 143 |
GO:000931419 | Esophagus | ESCC | response to radiation | 277/8552 | 456/18723 | 4.42e-11 | 1.43e-09 | 277 |
GO:00434143 | Esophagus | ESCC | macromolecule methylation | 199/8552 | 316/18723 | 3.44e-10 | 9.57e-09 | 199 |
GO:2001020110 | Esophagus | ESCC | regulation of response to DNA damage stimulus | 145/8552 | 219/18723 | 5.97e-10 | 1.50e-08 | 145 |
GO:007121419 | Esophagus | ESCC | cellular response to abiotic stimulus | 206/8552 | 331/18723 | 7.52e-10 | 1.88e-08 | 206 |
GO:010400419 | Esophagus | ESCC | cellular response to environmental stimulus | 206/8552 | 331/18723 | 7.52e-10 | 1.88e-08 | 206 |
GO:0052547111 | Esophagus | ESCC | regulation of peptidase activity | 275/8552 | 461/18723 | 7.54e-10 | 1.88e-08 | 275 |
GO:00322592 | Esophagus | ESCC | methylation | 222/8552 | 364/18723 | 2.26e-09 | 5.09e-08 | 222 |
GO:007147816 | Esophagus | ESCC | cellular response to radiation | 122/8552 | 186/18723 | 3.07e-08 | 5.73e-07 | 122 |
GO:0052548111 | Esophagus | ESCC | regulation of endopeptidase activity | 253/8552 | 432/18723 | 3.68e-08 | 6.78e-07 | 253 |
GO:000758410 | Esophagus | ESCC | response to nutrient | 114/8552 | 174/18723 | 9.43e-08 | 1.56e-06 | 114 |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
MGMT | SNV | Missense_Mutation | rs141095230 | c.118N>T | p.Arg40Cys | p.R40C | P16455 | protein_coding | tolerated(0.16) | possibly_damaging(0.865) | TCGA-91-7771-01 | Lung | lung adenocarcinoma | Male | <65 | I/II | Chemotherapy | cisplatin | CR |
MGMT | SNV | Missense_Mutation | | c.353N>T | p.Pro118Leu | p.P118L | P16455 | protein_coding | deleterious(0.03) | probably_damaging(0.953) | TCGA-18-3409-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
MGMT | SNV | Missense_Mutation | novel | c.338N>G | p.Pro113Arg | p.P113R | P16455 | protein_coding | deleterious(0.01) | probably_damaging(1) | TCGA-56-8626-01 | Lung | lung squamous cell carcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
MGMT | SNV | Missense_Mutation | novel | c.688T>G | p.Ser230Ala | p.S230A | P16455 | protein_coding | tolerated_low_confidence(0.43) | benign(0) | TCGA-CQ-6225-01 | Oral cavity | head & neck squamous cell carcinoma | Male | >=65 | III/IV | Unknown | Unknown | PD |
MGMT | SNV | Missense_Mutation | rs762165032 | c.497G>A | p.Arg166Lys | p.R166K | P16455 | protein_coding | tolerated(0.06) | benign(0.118) | TCGA-CR-6484-01 | Oral cavity | head & neck squamous cell carcinoma | Female | >=65 | I/II | Chemotherapy | carboplatin | SD |
MGMT | SNV | Missense_Mutation | novel | c.621N>T | p.Leu207Phe | p.L207F | P16455 | protein_coding | tolerated(0.06) | benign(0.019) | TCGA-CR-7367-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | paclitaxel | SD |
MGMT | SNV | Missense_Mutation | novel | c.485G>C | p.Gly162Ala | p.G162A | P16455 | protein_coding | deleterious(0) | probably_damaging(0.991) | TCGA-CR-7398-01 | Oral cavity | head & neck squamous cell carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
MGMT | SNV | Missense_Mutation | rs762983201 | c.689N>T | p.Ser230Leu | p.S230L | P16455 | protein_coding | deleterious_low_confidence(0.03) | benign(0.028) | TCGA-CV-7243-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | III/IV | Unknown | Unknown | SD |
MGMT | SNV | Missense_Mutation | | c.347N>G | p.His116Arg | p.H116R | P16455 | protein_coding | deleterious(0) | possibly_damaging(0.696) | TCGA-BR-4201-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Chemotherapy | cisplatin | SD |
MGMT | SNV | Missense_Mutation | rs544050191 | c.119N>A | p.Arg40His | p.R40H | P16455 | protein_coding | tolerated(0.55) | benign(0.013) | TCGA-BR-8487-01 | Stomach | stomach adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
4255 | MGMT | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, DNA REPAIR, ENZYME | | CHLORAMBUCIL | CHLORAMBUCIL | 8621235 |
4255 | MGMT | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, DNA REPAIR, ENZYME | | CPT-11 | IRINOTECAN HYDROCHLORIDE | 11802813 |
4255 | MGMT | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, DNA REPAIR, ENZYME | | GENISTEIN | GENISTEIN | 16203797 |
4255 | MGMT | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, DNA REPAIR, ENZYME | | NITROSOUREAS | | 9393761 |
4255 | MGMT | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, DNA REPAIR, ENZYME | | CDDP | CISPLATIN | 16043385 |
4255 | MGMT | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, DNA REPAIR, ENZYME | | TGFBETA1 | | 11262404 |
4255 | MGMT | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, DNA REPAIR, ENZYME | | DOX | | 1387586 |
4255 | MGMT | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, DNA REPAIR, ENZYME | | ANTIOXIDANT | | 17016661 |
4255 | MGMT | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, DNA REPAIR, ENZYME | | temozolomide | TEMOZOLOMIDE | 24444404 |
4255 | MGMT | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, DNA REPAIR, ENZYME | | CARMUSTINE | CARMUSTINE | 11070098 |