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Gene: CRTAM |
Gene summary for CRTAM |
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Gene information | Species | Human | Gene symbol | CRTAM | Gene ID | 56253 |
Gene name | cytotoxic and regulatory T cell molecule | |
Gene Alias | CD355 | |
Cytomap | 11q24.1 | |
Gene Type | protein-coding | GO ID | GO:0001767 | UniProtAcc | O95727 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
56253 | CRTAM | HCC1 | Human | Liver | HCC | 1.12e-02 | 6.41e-01 | 0.5336 |
56253 | CRTAM | HCC2 | Human | Liver | HCC | 7.48e-07 | 7.37e-01 | 0.5341 |
56253 | CRTAM | HCC5 | Human | Liver | HCC | 1.44e-13 | 7.62e-01 | 0.4932 |
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Tissue | Expression Dynamics | Abbreviation |
Liver | ![]() | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:000716322 | Liver | HCC | establishment or maintenance of cell polarity | 133/7958 | 218/18723 | 2.48e-08 | 5.73e-07 | 133 |
GO:00028312 | Liver | HCC | regulation of response to biotic stimulus | 173/7958 | 327/18723 | 8.55e-05 | 7.48e-04 | 173 |
GO:003001022 | Liver | HCC | establishment of cell polarity | 82/7958 | 143/18723 | 2.38e-04 | 1.79e-03 | 82 |
GO:00450881 | Liver | HCC | regulation of innate immune response | 113/7958 | 218/18723 | 3.27e-03 | 1.50e-02 | 113 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
CRTAM | SNV | Missense_Mutation | c.223N>A | p.His75Asn | p.H75N | O95727 | protein_coding | tolerated(0.09) | benign(0.005) | TCGA-CA-6717-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Chemotherapy | oxaliplatin | CR | |
CRTAM | SNV | Missense_Mutation | c.632C>T | p.Pro211Leu | p.P211L | O95727 | protein_coding | deleterious(0.05) | benign(0.25) | TCGA-DM-A1HB-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Unknown | Unknown | SD | |
CRTAM | SNV | Missense_Mutation | rs148256561 | c.970N>A | p.Glu324Lys | p.E324K | O95727 | protein_coding | deleterious(0.01) | possibly_damaging(0.665) | TCGA-AG-3892-01 | Colorectum | rectum adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
CRTAM | SNV | Missense_Mutation | novel | c.880G>A | p.Val294Met | p.V294M | O95727 | protein_coding | deleterious(0) | probably_damaging(0.998) | TCGA-F5-6814-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
CRTAM | SNV | Missense_Mutation | c.1152G>T | p.Lys384Asn | p.K384N | O95727 | protein_coding | tolerated(0.13) | benign(0.027) | TCGA-F5-6814-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
CRTAM | deletion | Frame_Shift_Del | c.173delN | p.Leu60Ter | p.L60* | O95727 | protein_coding | TCGA-AZ-4313-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |||
CRTAM | SNV | Missense_Mutation | novel | c.268N>A | p.Leu90Met | p.L90M | O95727 | protein_coding | tolerated(0.09) | possibly_damaging(0.729) | TCGA-A5-A0G2-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
CRTAM | SNV | Missense_Mutation | novel | c.580N>A | p.Val194Met | p.V194M | O95727 | protein_coding | deleterious(0.01) | possibly_damaging(0.876) | TCGA-A5-A0G2-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
CRTAM | SNV | Missense_Mutation | novel | c.1154N>G | p.His385Arg | p.H385R | O95727 | protein_coding | tolerated(0.36) | benign(0) | TCGA-A5-A0G2-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
CRTAM | SNV | Missense_Mutation | rs141406750 | c.175T>G | p.Phe59Val | p.F59V | O95727 | protein_coding | deleterious(0) | probably_damaging(0.958) | TCGA-AP-A0LM-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | cisplatin | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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