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Gene: NYNRIN |
Gene summary for NYNRIN |
Gene summary. |
Gene information | Species | Human | Gene symbol | NYNRIN | Gene ID | 57523 |
Gene name | NYN domain and retroviral integrase containing | |
Gene Alias | CGIN1 | |
Cytomap | 14q12 | |
Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | Q9P2P1 |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
57523 | NYNRIN | LZE5T | Human | Esophagus | ESCC | 5.72e-03 | 2.94e-01 | 0.0514 |
57523 | NYNRIN | LZE8T | Human | Esophagus | ESCC | 9.98e-03 | 1.07e-01 | 0.067 |
57523 | NYNRIN | LZE24T | Human | Esophagus | ESCC | 9.49e-08 | 2.58e-01 | 0.0596 |
57523 | NYNRIN | P2T-E | Human | Esophagus | ESCC | 2.94e-06 | 1.61e-01 | 0.1177 |
57523 | NYNRIN | P4T-E | Human | Esophagus | ESCC | 4.21e-06 | 2.27e-01 | 0.1323 |
57523 | NYNRIN | P5T-E | Human | Esophagus | ESCC | 8.79e-07 | 8.28e-02 | 0.1327 |
57523 | NYNRIN | P8T-E | Human | Esophagus | ESCC | 3.05e-14 | 3.45e-01 | 0.0889 |
57523 | NYNRIN | P9T-E | Human | Esophagus | ESCC | 1.49e-02 | 5.87e-02 | 0.1131 |
57523 | NYNRIN | P10T-E | Human | Esophagus | ESCC | 2.36e-21 | 3.49e-01 | 0.116 |
57523 | NYNRIN | P12T-E | Human | Esophagus | ESCC | 6.70e-38 | 7.47e-01 | 0.1122 |
57523 | NYNRIN | P15T-E | Human | Esophagus | ESCC | 2.49e-10 | 3.42e-01 | 0.1149 |
57523 | NYNRIN | P22T-E | Human | Esophagus | ESCC | 5.45e-06 | 1.59e-01 | 0.1236 |
57523 | NYNRIN | P23T-E | Human | Esophagus | ESCC | 6.54e-10 | 1.93e-01 | 0.108 |
57523 | NYNRIN | P26T-E | Human | Esophagus | ESCC | 3.86e-10 | 1.94e-01 | 0.1276 |
57523 | NYNRIN | P27T-E | Human | Esophagus | ESCC | 1.96e-15 | 2.91e-01 | 0.1055 |
57523 | NYNRIN | P28T-E | Human | Esophagus | ESCC | 4.39e-10 | 2.46e-01 | 0.1149 |
57523 | NYNRIN | P39T-E | Human | Esophagus | ESCC | 9.78e-05 | 1.08e-01 | 0.0894 |
57523 | NYNRIN | P48T-E | Human | Esophagus | ESCC | 3.05e-04 | 9.04e-02 | 0.0959 |
57523 | NYNRIN | P49T-E | Human | Esophagus | ESCC | 1.98e-05 | 5.84e-01 | 0.1768 |
57523 | NYNRIN | P57T-E | Human | Esophagus | ESCC | 1.66e-09 | 2.18e-01 | 0.0926 |
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Transcriptomic changes along malignancy continuum. |
Tissue | Expression Dynamics | Abbreviation |
Esophagus | ESCC: Esophageal squamous cell carcinoma | |
HGIN: High-grade intraepithelial neoplasias | ||
LGIN: Low-grade intraepithelial neoplasias |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00905013 | Esophagus | ESCC | RNA phosphodiester bond hydrolysis | 110/8552 | 152/18723 | 1.95e-11 | 6.81e-10 | 110 |
GO:00903053 | Esophagus | ESCC | nucleic acid phosphodiester bond hydrolysis | 163/8552 | 261/18723 | 3.07e-08 | 5.73e-07 | 163 |
GO:00905023 | Esophagus | ESCC | RNA phosphodiester bond hydrolysis, endonucleolytic | 55/8552 | 82/18723 | 7.34e-05 | 5.51e-04 | 55 |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
NYNRIN | SNV | Missense_Mutation | c.4364N>C | p.Trp1455Ser | p.W1455S | Q9P2P1 | protein_coding | tolerated_low_confidence(0.1) | benign(0) | TCGA-CH-5754-01 | Prostate | prostate adenocarcinoma | Male | >=65 | 9 | Unknown | Unknown | SD | |
NYNRIN | SNV | Missense_Mutation | c.419N>A | p.Arg140Gln | p.R140Q | Q9P2P1 | protein_coding | tolerated_low_confidence(0.05) | benign(0.037) | TCGA-CH-5792-01 | Prostate | prostate adenocarcinoma | Male | <65 | 9 | Unknown | Unknown | SD | |
NYNRIN | SNV | Missense_Mutation | rs777933278 | c.3277G>A | p.Ala1093Thr | p.A1093T | Q9P2P1 | protein_coding | tolerated(0.29) | benign(0.105) | TCGA-HC-A8D1-01 | Prostate | prostate adenocarcinoma | Male | >=65 | 7 | Unknown | Unknown | SD |
NYNRIN | SNV | Missense_Mutation | c.214N>A | p.Leu72Met | p.L72M | Q9P2P1 | protein_coding | deleterious_low_confidence(0) | probably_damaging(0.986) | TCGA-J9-A52C-01 | Prostate | prostate adenocarcinoma | Male | <65 | 9 | Unknown | Unknown | SD | |
NYNRIN | SNV | Missense_Mutation | novel | c.3380N>C | p.Asp1127Ala | p.D1127A | Q9P2P1 | protein_coding | deleterious(0.04) | benign(0.013) | TCGA-ZG-A9MC-01 | Prostate | prostate adenocarcinoma | Male | >=65 | 9 | Unknown | Unknown | SD |
NYNRIN | SNV | Missense_Mutation | c.3898N>T | p.Pro1300Ser | p.P1300S | Q9P2P1 | protein_coding | deleterious_low_confidence(0) | possibly_damaging(0.755) | TCGA-B7-5816-01 | Stomach | stomach adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
NYNRIN | SNV | Missense_Mutation | rs368016452 | c.3734N>A | p.Arg1245Gln | p.R1245Q | Q9P2P1 | protein_coding | tolerated(0.38) | benign(0) | TCGA-B7-A5TI-01 | Stomach | stomach adenocarcinoma | Male | <65 | III/IV | Chemotherapy | eloxatin | CR |
NYNRIN | SNV | Missense_Mutation | rs772745095 | c.2456T>C | p.Met819Thr | p.M819T | Q9P2P1 | protein_coding | deleterious_low_confidence(0) | possibly_damaging(0.756) | TCGA-BR-4292-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
NYNRIN | SNV | Missense_Mutation | rs777661158 | c.3481C>T | p.Arg1161Cys | p.R1161C | Q9P2P1 | protein_coding | tolerated(0.14) | benign(0) | TCGA-BR-4292-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
NYNRIN | SNV | Missense_Mutation | novel | c.3680C>A | p.Pro1227Gln | p.P1227Q | Q9P2P1 | protein_coding | deleterious(0) | benign(0.37) | TCGA-BR-6456-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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