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Gene: LRP12 |
Gene summary for LRP12 |
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Gene information | Species | Human | Gene symbol | LRP12 | Gene ID | 29967 |
Gene name | LDL receptor related protein 12 | |
Gene Alias | MIG13A | |
Cytomap | 8q22.3 | |
Gene Type | protein-coding | GO ID | GO:0001764 | UniProtAcc | Q59H02 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
29967 | LRP12 | LZE4T | Human | Esophagus | ESCC | 7.72e-09 | 2.39e-01 | 0.0811 |
29967 | LRP12 | LZE24T | Human | Esophagus | ESCC | 5.97e-06 | 1.18e-01 | 0.0596 |
29967 | LRP12 | P2T-E | Human | Esophagus | ESCC | 2.28e-11 | 1.89e-01 | 0.1177 |
29967 | LRP12 | P8T-E | Human | Esophagus | ESCC | 3.44e-06 | 4.16e-02 | 0.0889 |
29967 | LRP12 | P9T-E | Human | Esophagus | ESCC | 1.05e-14 | 3.13e-01 | 0.1131 |
29967 | LRP12 | P10T-E | Human | Esophagus | ESCC | 1.91e-18 | 2.48e-01 | 0.116 |
29967 | LRP12 | P12T-E | Human | Esophagus | ESCC | 4.75e-12 | 2.14e-01 | 0.1122 |
29967 | LRP12 | P15T-E | Human | Esophagus | ESCC | 3.34e-15 | 3.11e-01 | 0.1149 |
29967 | LRP12 | P16T-E | Human | Esophagus | ESCC | 1.51e-25 | 4.85e-01 | 0.1153 |
29967 | LRP12 | P19T-E | Human | Esophagus | ESCC | 1.92e-03 | 2.85e-01 | 0.1662 |
29967 | LRP12 | P20T-E | Human | Esophagus | ESCC | 2.31e-03 | 3.50e-02 | 0.1124 |
29967 | LRP12 | P21T-E | Human | Esophagus | ESCC | 8.81e-07 | 1.38e-01 | 0.1617 |
29967 | LRP12 | P22T-E | Human | Esophagus | ESCC | 4.36e-15 | 2.65e-01 | 0.1236 |
29967 | LRP12 | P24T-E | Human | Esophagus | ESCC | 1.25e-02 | 4.26e-02 | 0.1287 |
29967 | LRP12 | P26T-E | Human | Esophagus | ESCC | 4.80e-30 | 5.16e-01 | 0.1276 |
29967 | LRP12 | P27T-E | Human | Esophagus | ESCC | 3.28e-03 | 4.63e-02 | 0.1055 |
29967 | LRP12 | P28T-E | Human | Esophagus | ESCC | 5.36e-32 | 6.68e-01 | 0.1149 |
29967 | LRP12 | P30T-E | Human | Esophagus | ESCC | 1.99e-21 | 6.01e-01 | 0.137 |
29967 | LRP12 | P31T-E | Human | Esophagus | ESCC | 3.08e-12 | 2.54e-01 | 0.1251 |
29967 | LRP12 | P32T-E | Human | Esophagus | ESCC | 7.88e-24 | 4.74e-01 | 0.1666 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:004586222 | Liver | HCC | positive regulation of proteolysis | 232/7958 | 372/18723 | 5.66e-15 | 3.98e-13 | 232 |
GO:001056322 | Liver | HCC | negative regulation of phosphorus metabolic process | 259/7958 | 442/18723 | 4.29e-12 | 1.92e-10 | 259 |
GO:004593622 | Liver | HCC | negative regulation of phosphate metabolic process | 258/7958 | 441/18723 | 6.00e-12 | 2.60e-10 | 258 |
GO:004232622 | Liver | HCC | negative regulation of phosphorylation | 227/7958 | 385/18723 | 3.98e-11 | 1.52e-09 | 227 |
GO:000193322 | Liver | HCC | negative regulation of protein phosphorylation | 196/7958 | 342/18723 | 1.95e-08 | 4.63e-07 | 196 |
GO:004328112 | Liver | HCC | regulation of cysteine-type endopeptidase activity involved in apoptotic process | 125/7958 | 209/18723 | 3.12e-07 | 5.42e-06 | 125 |
GO:200011612 | Liver | HCC | regulation of cysteine-type endopeptidase activity | 137/7958 | 235/18723 | 6.91e-07 | 1.08e-05 | 137 |
GO:005254722 | Liver | HCC | regulation of peptidase activity | 247/7958 | 461/18723 | 8.28e-07 | 1.27e-05 | 247 |
GO:005254822 | Liver | HCC | regulation of endopeptidase activity | 230/7958 | 432/18723 | 3.58e-06 | 4.68e-05 | 230 |
GO:000724912 | Liver | HCC | I-kappaB kinase/NF-kappaB signaling | 156/7958 | 281/18723 | 6.66e-06 | 8.00e-05 | 156 |
GO:004312212 | Liver | HCC | regulation of I-kappaB kinase/NF-kappaB signaling | 138/7958 | 249/18723 | 2.47e-05 | 2.58e-04 | 138 |
GO:001095212 | Liver | HCC | positive regulation of peptidase activity | 110/7958 | 197/18723 | 1.04e-04 | 8.98e-04 | 110 |
GO:00467775 | Liver | HCC | protein autophosphorylation | 123/7958 | 227/18723 | 2.40e-04 | 1.80e-03 | 123 |
GO:00434097 | Liver | HCC | negative regulation of MAPK cascade | 98/7958 | 180/18723 | 7.88e-04 | 4.74e-03 | 98 |
GO:00510902 | Liver | HCC | regulation of DNA-binding transcription factor activity | 220/7958 | 440/18723 | 8.04e-04 | 4.82e-03 | 220 |
GO:001095012 | Liver | HCC | positive regulation of endopeptidase activity | 96/7958 | 179/18723 | 1.68e-03 | 8.79e-03 | 96 |
GO:19012242 | Liver | HCC | positive regulation of NIK/NF-kappaB signaling | 41/7958 | 69/18723 | 3.38e-03 | 1.54e-02 | 41 |
GO:00380611 | Liver | HCC | NIK/NF-kappaB signaling | 77/7958 | 143/18723 | 3.98e-03 | 1.76e-02 | 77 |
GO:004328012 | Liver | HCC | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 70/7958 | 129/18723 | 4.58e-03 | 1.97e-02 | 70 |
GO:200105612 | Liver | HCC | positive regulation of cysteine-type endopeptidase activity | 79/7958 | 148/18723 | 4.82e-03 | 2.03e-02 | 79 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
LRP12 | SNV | Missense_Mutation | c.971N>T | p.Asn324Ile | p.N324I | Q9Y561 | protein_coding | tolerated(0.07) | probably_damaging(0.972) | TCGA-BR-4368-01 | Stomach | stomach adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD | |
LRP12 | SNV | Missense_Mutation | c.2279N>C | p.Leu760Pro | p.L760P | Q9Y561 | protein_coding | deleterious_low_confidence(0.04) | probably_damaging(0.995) | TCGA-BR-6453-01 | Stomach | stomach adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
LRP12 | SNV | Missense_Mutation | rs748604344 | c.2212N>T | p.Arg738Cys | p.R738C | Q9Y561 | protein_coding | deleterious(0) | possibly_damaging(0.818) | TCGA-BR-8081-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
LRP12 | SNV | Missense_Mutation | c.1944N>G | p.Phe648Leu | p.F648L | Q9Y561 | protein_coding | tolerated(0.89) | benign(0) | TCGA-BR-8680-01 | Stomach | stomach adenocarcinoma | Male | <65 | III/IV | Chemotherapy | oxaliplatin | CR | |
LRP12 | SNV | Missense_Mutation | c.1523T>C | p.Leu508Pro | p.L508P | Q9Y561 | protein_coding | deleterious(0) | probably_damaging(0.995) | TCGA-BR-A4QL-01 | Stomach | stomach adenocarcinoma | Female | >=65 | III/IV | Chemotherapy | xeloda | CR | |
LRP12 | SNV | Missense_Mutation | rs748604344 | c.2212C>T | p.Arg738Cys | p.R738C | Q9Y561 | protein_coding | deleterious(0) | possibly_damaging(0.818) | TCGA-CD-A4MJ-01 | Stomach | stomach adenocarcinoma | Male | <65 | I/II | Chemotherapy | cisplatin | CR |
LRP12 | SNV | Missense_Mutation | c.616N>T | p.Pro206Ser | p.P206S | Q9Y561 | protein_coding | deleterious(0.03) | benign(0) | TCGA-CG-5721-01 | Stomach | stomach adenocarcinoma | Male | <65 | III/IV | Unknown | Unknown | SD | |
LRP12 | SNV | Missense_Mutation | rs770819286 | c.1837N>T | p.Arg613Cys | p.R613C | Q9Y561 | protein_coding | deleterious(0) | possibly_damaging(0.791) | TCGA-D7-A4YV-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
LRP12 | SNV | Missense_Mutation | novel | c.248N>C | p.Asn83Thr | p.N83T | Q9Y561 | protein_coding | deleterious(0.03) | benign(0.197) | TCGA-D7-A747-01 | Stomach | stomach adenocarcinoma | Male | <65 | I/II | Chemotherapy | epirubicinum | PD |
LRP12 | SNV | Missense_Mutation | rs540727474 | c.1987G>T | p.Asp663Tyr | p.D663Y | Q9Y561 | protein_coding | deleterious(0.04) | benign(0.371) | TCGA-F1-6874-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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