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Gene: LAMB2 |
Gene summary for LAMB2 |
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Gene information | Species | Human | Gene symbol | LAMB2 | Gene ID | 3913 |
Gene name | laminin subunit beta 2 | |
Gene Alias | LAMS | |
Cytomap | 3p21.31 | |
Gene Type | protein-coding | GO ID | GO:0000902 | UniProtAcc | A0A024R319 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
3913 | LAMB2 | S43 | Human | Liver | Cirrhotic | 5.59e-05 | 3.31e-01 | -0.0187 |
3913 | LAMB2 | HCC1_Meng | Human | Liver | HCC | 2.18e-44 | 3.50e-02 | 0.0246 |
3913 | LAMB2 | HCC2_Meng | Human | Liver | HCC | 6.46e-14 | -1.60e-02 | 0.0107 |
3913 | LAMB2 | cirrhotic2 | Human | Liver | Cirrhotic | 1.74e-13 | 2.56e-01 | 0.0201 |
3913 | LAMB2 | cirrhotic3 | Human | Liver | Cirrhotic | 1.16e-09 | 2.49e-01 | 0.0215 |
3913 | LAMB2 | HCC1 | Human | Liver | HCC | 5.52e-04 | 3.75e+00 | 0.5336 |
3913 | LAMB2 | HCC2 | Human | Liver | HCC | 1.51e-08 | 3.52e+00 | 0.5341 |
3913 | LAMB2 | Pt13.b | Human | Liver | HCC | 4.34e-05 | 1.14e-01 | 0.0251 |
3913 | LAMB2 | Pt14.b | Human | Liver | HCC | 2.72e-03 | 2.76e-01 | 0.018 |
3913 | LAMB2 | S014 | Human | Liver | HCC | 1.47e-06 | 4.29e-01 | 0.2254 |
3913 | LAMB2 | S015 | Human | Liver | HCC | 2.63e-08 | 6.80e-01 | 0.2375 |
3913 | LAMB2 | S016 | Human | Liver | HCC | 1.58e-07 | 4.37e-01 | 0.2243 |
3913 | LAMB2 | S027 | Human | Liver | HCC | 2.99e-10 | 8.22e-01 | 0.2446 |
3913 | LAMB2 | S028 | Human | Liver | HCC | 2.00e-18 | 8.76e-01 | 0.2503 |
3913 | LAMB2 | S029 | Human | Liver | HCC | 7.15e-24 | 9.42e-01 | 0.2581 |
3913 | LAMB2 | C21 | Human | Oral cavity | OSCC | 2.79e-03 | 9.93e-02 | 0.2678 |
3913 | LAMB2 | C30 | Human | Oral cavity | OSCC | 3.19e-05 | 4.85e-01 | 0.3055 |
3913 | LAMB2 | C46 | Human | Oral cavity | OSCC | 1.74e-04 | 1.54e-01 | 0.1673 |
3913 | LAMB2 | C08 | Human | Oral cavity | OSCC | 1.75e-02 | 7.90e-02 | 0.1919 |
3913 | LAMB2 | C09 | Human | Oral cavity | OSCC | 1.32e-06 | 4.06e-01 | 0.1431 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:003158912 | Liver | Cirrhotic | cell-substrate adhesion | 128/4634 | 363/18723 | 4.10e-06 | 6.90e-05 | 128 |
GO:003444612 | Liver | Cirrhotic | substrate adhesion-dependent cell spreading | 47/4634 | 108/18723 | 1.48e-05 | 2.05e-04 | 47 |
GO:001604911 | Liver | Cirrhotic | cell growth | 160/4634 | 482/18723 | 1.50e-05 | 2.07e-04 | 160 |
GO:000206412 | Liver | Cirrhotic | epithelial cell development | 80/4634 | 220/18723 | 7.63e-05 | 8.44e-04 | 80 |
GO:003109911 | Liver | Cirrhotic | regeneration | 71/4634 | 198/18723 | 3.02e-04 | 2.65e-03 | 71 |
GO:0071711 | Liver | Cirrhotic | basement membrane organization | 17/4634 | 31/18723 | 3.19e-04 | 2.77e-03 | 17 |
GO:0042063 | Liver | Cirrhotic | gliogenesis | 98/4634 | 301/18723 | 1.28e-03 | 8.60e-03 | 98 |
GO:0010001 | Liver | Cirrhotic | glial cell differentiation | 75/4634 | 225/18723 | 2.24e-03 | 1.36e-02 | 75 |
GO:0072015 | Liver | Cirrhotic | glomerular visceral epithelial cell development | 8/4634 | 12/18723 | 2.59e-03 | 1.53e-02 | 8 |
GO:0072310 | Liver | Cirrhotic | glomerular epithelial cell development | 8/4634 | 13/18723 | 5.27e-03 | 2.70e-02 | 8 |
GO:001604921 | Liver | HCC | cell growth | 269/7958 | 482/18723 | 1.84e-09 | 5.35e-08 | 269 |
GO:003444622 | Liver | HCC | substrate adhesion-dependent cell spreading | 67/7958 | 108/18723 | 3.24e-05 | 3.28e-04 | 67 |
GO:003158922 | Liver | HCC | cell-substrate adhesion | 188/7958 | 363/18723 | 2.00e-04 | 1.55e-03 | 188 |
GO:00310992 | Liver | HCC | regeneration | 107/7958 | 198/18723 | 6.67e-04 | 4.12e-03 | 107 |
GO:006056011 | Liver | HCC | developmental growth involved in morphogenesis | 124/7958 | 234/18723 | 7.37e-04 | 4.47e-03 | 124 |
GO:00016553 | Liver | HCC | urogenital system development | 170/7958 | 338/18723 | 2.15e-03 | 1.08e-02 | 170 |
GO:004867511 | Liver | HCC | axon extension | 67/7958 | 120/18723 | 2.17e-03 | 1.09e-02 | 67 |
GO:199013811 | Liver | HCC | neuron projection extension | 92/7958 | 172/18723 | 2.31e-03 | 1.14e-02 | 92 |
GO:00723101 | Liver | HCC | glomerular epithelial cell development | 11/7958 | 13/18723 | 2.38e-03 | 1.16e-02 | 11 |
GO:004858811 | Liver | HCC | developmental cell growth | 121/7958 | 234/18723 | 2.68e-03 | 1.28e-02 | 121 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa0451021 | Liver | Cirrhotic | Focal adhesion | 93/2530 | 203/8465 | 9.27e-07 | 1.10e-05 | 6.80e-06 | 93 |
hsa05165 | Liver | Cirrhotic | Human papillomavirus infection | 124/2530 | 331/8465 | 1.55e-03 | 7.83e-03 | 4.83e-03 | 124 |
hsa0514512 | Liver | Cirrhotic | Toxoplasmosis | 47/2530 | 112/8465 | 4.16e-03 | 1.63e-02 | 1.00e-02 | 47 |
hsa0451031 | Liver | Cirrhotic | Focal adhesion | 93/2530 | 203/8465 | 9.27e-07 | 1.10e-05 | 6.80e-06 | 93 |
hsa051651 | Liver | Cirrhotic | Human papillomavirus infection | 124/2530 | 331/8465 | 1.55e-03 | 7.83e-03 | 4.83e-03 | 124 |
hsa0514513 | Liver | Cirrhotic | Toxoplasmosis | 47/2530 | 112/8465 | 4.16e-03 | 1.63e-02 | 1.00e-02 | 47 |
hsa0451041 | Liver | HCC | Focal adhesion | 125/4020 | 203/8465 | 3.12e-05 | 1.88e-04 | 1.04e-04 | 125 |
hsa051652 | Liver | HCC | Human papillomavirus infection | 188/4020 | 331/8465 | 3.34e-04 | 1.49e-03 | 8.29e-04 | 188 |
hsa0514521 | Liver | HCC | Toxoplasmosis | 70/4020 | 112/8465 | 9.25e-04 | 3.52e-03 | 1.96e-03 | 70 |
hsa052224 | Liver | HCC | Small cell lung cancer | 57/4020 | 92/8465 | 3.54e-03 | 1.12e-02 | 6.22e-03 | 57 |
hsa0451051 | Liver | HCC | Focal adhesion | 125/4020 | 203/8465 | 3.12e-05 | 1.88e-04 | 1.04e-04 | 125 |
hsa051653 | Liver | HCC | Human papillomavirus infection | 188/4020 | 331/8465 | 3.34e-04 | 1.49e-03 | 8.29e-04 | 188 |
hsa0514531 | Liver | HCC | Toxoplasmosis | 70/4020 | 112/8465 | 9.25e-04 | 3.52e-03 | 1.96e-03 | 70 |
hsa0522211 | Liver | HCC | Small cell lung cancer | 57/4020 | 92/8465 | 3.54e-03 | 1.12e-02 | 6.22e-03 | 57 |
hsa051659 | Oral cavity | OSCC | Human papillomavirus infection | 200/3704 | 331/8465 | 3.83e-10 | 4.93e-09 | 2.51e-09 | 200 |
hsa0451019 | Oral cavity | OSCC | Focal adhesion | 128/3704 | 203/8465 | 1.71e-08 | 1.63e-07 | 8.31e-08 | 128 |
hsa052228 | Oral cavity | OSCC | Small cell lung cancer | 66/3704 | 92/8465 | 4.43e-08 | 3.38e-07 | 1.72e-07 | 66 |
hsa0514520 | Oral cavity | OSCC | Toxoplasmosis | 75/3704 | 112/8465 | 5.28e-07 | 3.16e-06 | 1.61e-06 | 75 |
hsa041516 | Oral cavity | OSCC | PI3K-Akt signaling pathway | 185/3704 | 354/8465 | 6.26e-04 | 1.86e-03 | 9.49e-04 | 185 |
hsa051468 | Oral cavity | OSCC | Amoebiasis | 59/3704 | 102/8465 | 2.78e-03 | 7.17e-03 | 3.65e-03 | 59 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
LAMB2 | ITGA1_ITGB1 | LAMB2_ITGA1_ITGB1 | LAMININ | Breast | ADJ |
LAMB2 | ITGA2_ITGB1 | LAMB2_ITGA2_ITGB1 | LAMININ | Breast | ADJ |
LAMB2 | CD44 | LAMB2_CD44 | LAMININ | Breast | ADJ |
LAMB2 | ITGA1_ITGB1 | LAMB2_ITGA1_ITGB1 | LAMININ | Breast | DCIS |
LAMB2 | ITGA2_ITGB1 | LAMB2_ITGA2_ITGB1 | LAMININ | Breast | DCIS |
LAMB2 | ITGA6_ITGB1 | LAMB2_ITGA6_ITGB1 | LAMININ | Breast | DCIS |
LAMB2 | ITGA7_ITGB1 | LAMB2_ITGA7_ITGB1 | LAMININ | Breast | DCIS |
LAMB2 | ITGA6_ITGB4 | LAMB2_ITGA6_ITGB4 | LAMININ | Breast | DCIS |
LAMB2 | CD44 | LAMB2_CD44 | LAMININ | Breast | DCIS |
LAMB2 | DAG1 | LAMB2_DAG1 | LAMININ | Breast | DCIS |
LAMB2 | ITGA1_ITGB1 | LAMB2_ITGA1_ITGB1 | LAMININ | Breast | Healthy |
LAMB2 | ITGA2_ITGB1 | LAMB2_ITGA2_ITGB1 | LAMININ | Breast | Healthy |
LAMB2 | ITGA6_ITGB1 | LAMB2_ITGA6_ITGB1 | LAMININ | Breast | Healthy |
LAMB2 | ITGA7_ITGB1 | LAMB2_ITGA7_ITGB1 | LAMININ | Breast | Healthy |
LAMB2 | ITGAV_ITGB8 | LAMB2_ITGAV_ITGB8 | LAMININ | Breast | Healthy |
LAMB2 | CD44 | LAMB2_CD44 | LAMININ | Breast | Healthy |
LAMB2 | ITGA1_ITGB1 | LAMB2_ITGA1_ITGB1 | LAMININ | Breast | IDC |
LAMB2 | ITGA6_ITGB1 | LAMB2_ITGA6_ITGB1 | LAMININ | Breast | IDC |
LAMB2 | CD44 | LAMB2_CD44 | LAMININ | Breast | IDC |
LAMB2 | ITGA1_ITGB1 | LAMB2_ITGA1_ITGB1 | LAMININ | Breast | Precancer |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
LAMB2 | SNV | Missense_Mutation | rs563405094 | c.2578N>T | p.Arg860Cys | p.R860C | P55268 | protein_coding | deleterious(0) | probably_damaging(0.98) | TCGA-MN-A4N4-01 | Lung | lung adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
LAMB2 | SNV | Missense_Mutation | c.3787G>C | p.Glu1263Gln | p.E1263Q | P55268 | protein_coding | tolerated(0.15) | benign(0.122) | TCGA-37-3783-01 | Lung | lung squamous cell carcinoma | Male | <65 | III/IV | Unknown | Unknown | SD | |
LAMB2 | SNV | Missense_Mutation | novel | c.3641N>T | p.Arg1214Leu | p.R1214L | P55268 | protein_coding | deleterious(0.02) | benign(0.001) | TCGA-46-3768-01 | Lung | lung squamous cell carcinoma | Male | <65 | III/IV | Chemotherapy | carboplatin | SD |
LAMB2 | SNV | Missense_Mutation | c.1559N>T | p.Arg520Leu | p.R520L | P55268 | protein_coding | deleterious(0) | benign(0.264) | TCGA-66-2795-01 | Lung | lung squamous cell carcinoma | Male | >=65 | III/IV | Unknown | Unknown | SD | |
LAMB2 | SNV | Missense_Mutation | novel | c.4911N>T | p.Gln1637His | p.Q1637H | P55268 | protein_coding | tolerated(0.08) | benign(0) | TCGA-77-7139-01 | Lung | lung squamous cell carcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
LAMB2 | SNV | Missense_Mutation | novel | c.2410N>C | p.Cys804Arg | p.C804R | P55268 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-77-8150-01 | Lung | lung squamous cell carcinoma | Male | <65 | III/IV | Unknown | Unknown | PD |
LAMB2 | SNV | Missense_Mutation | novel | c.4131G>C | p.Glu1377Asp | p.E1377D | P55268 | protein_coding | tolerated(1) | benign(0) | TCGA-85-8277-01 | Lung | lung squamous cell carcinoma | Male | >=65 | III/IV | Unknown | Unknown | SD |
LAMB2 | SNV | Missense_Mutation | novel | c.3886N>C | p.Ala1296Pro | p.A1296P | P55268 | protein_coding | tolerated(0.2) | possibly_damaging(0.69) | TCGA-85-A511-01 | Lung | lung squamous cell carcinoma | Male | <65 | I/II | Unknown | Unknown | PD |
LAMB2 | SNV | Missense_Mutation | novel | c.765N>T | p.Leu255Phe | p.L255F | P55268 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-90-A59Q-01 | Lung | lung squamous cell carcinoma | Female | <65 | I/II | Chemotherapy | cisplatin | PD |
LAMB2 | SNV | Missense_Mutation | novel | c.907N>C | p.Glu303Gln | p.E303Q | P55268 | protein_coding | deleterious(0.02) | possibly_damaging(0.825) | TCGA-92-7340-01 | Lung | lung squamous cell carcinoma | Female | <65 | I/II | Chemotherapy | cisplatin | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
3913 | LAMB2 | DRUGGABLE GENOME | CHEMBL2095222 | OCRIPLASMIN | ||
3913 | LAMB2 | DRUGGABLE GENOME | CHEMBL2095222 | OCRIPLASMIN |
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