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Gene: SPG20 |
Gene summary for SPG20 |
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Gene information | Species | Human | Gene symbol | SPG20 | Gene ID | 23111 |
Gene name | spartin | |
Gene Alias | SPG20 | |
Cytomap | 13q13.3 | |
Gene Type | protein-coding | GO ID | GO:0000902 | UniProtAcc | A0A024RDV9 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
23111 | SPG20 | P2T-E | Human | Esophagus | ESCC | 5.07e-24 | 5.12e-01 | 0.1177 |
23111 | SPG20 | P4T-E | Human | Esophagus | ESCC | 1.18e-04 | -1.11e-02 | 0.1323 |
23111 | SPG20 | P5T-E | Human | Esophagus | ESCC | 3.12e-07 | 6.24e-02 | 0.1327 |
23111 | SPG20 | P9T-E | Human | Esophagus | ESCC | 2.36e-22 | 5.19e-01 | 0.1131 |
23111 | SPG20 | P10T-E | Human | Esophagus | ESCC | 6.20e-28 | 5.00e-01 | 0.116 |
23111 | SPG20 | P11T-E | Human | Esophagus | ESCC | 1.49e-14 | 4.84e-01 | 0.1426 |
23111 | SPG20 | P12T-E | Human | Esophagus | ESCC | 3.12e-06 | 6.47e-03 | 0.1122 |
23111 | SPG20 | P15T-E | Human | Esophagus | ESCC | 7.43e-20 | 2.73e-01 | 0.1149 |
23111 | SPG20 | P16T-E | Human | Esophagus | ESCC | 2.45e-05 | 8.74e-02 | 0.1153 |
23111 | SPG20 | P20T-E | Human | Esophagus | ESCC | 3.13e-02 | -7.13e-02 | 0.1124 |
23111 | SPG20 | P21T-E | Human | Esophagus | ESCC | 2.82e-05 | 5.57e-02 | 0.1617 |
23111 | SPG20 | P22T-E | Human | Esophagus | ESCC | 4.61e-12 | 2.59e-01 | 0.1236 |
23111 | SPG20 | P24T-E | Human | Esophagus | ESCC | 2.74e-20 | 3.07e-01 | 0.1287 |
23111 | SPG20 | P26T-E | Human | Esophagus | ESCC | 5.01e-14 | 1.90e-01 | 0.1276 |
23111 | SPG20 | P32T-E | Human | Esophagus | ESCC | 9.12e-18 | 2.59e-01 | 0.1666 |
23111 | SPG20 | P36T-E | Human | Esophagus | ESCC | 5.44e-21 | 5.70e-01 | 0.1187 |
23111 | SPG20 | P37T-E | Human | Esophagus | ESCC | 3.45e-14 | 2.65e-01 | 0.1371 |
23111 | SPG20 | P38T-E | Human | Esophagus | ESCC | 4.02e-02 | 7.78e-02 | 0.127 |
23111 | SPG20 | P39T-E | Human | Esophagus | ESCC | 1.08e-07 | 7.10e-02 | 0.0894 |
23111 | SPG20 | P40T-E | Human | Esophagus | ESCC | 5.58e-06 | 1.10e-01 | 0.109 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa0414420 | Endometrium | AEH | Endocytosis | 56/1197 | 251/8465 | 2.58e-04 | 2.15e-03 | 1.57e-03 | 56 |
hsa04144110 | Endometrium | AEH | Endocytosis | 56/1197 | 251/8465 | 2.58e-04 | 2.15e-03 | 1.57e-03 | 56 |
hsa0414424 | Endometrium | EEC | Endocytosis | 57/1237 | 251/8465 | 3.34e-04 | 2.82e-03 | 2.10e-03 | 57 |
hsa0414434 | Endometrium | EEC | Endocytosis | 57/1237 | 251/8465 | 3.34e-04 | 2.82e-03 | 2.10e-03 | 57 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
SPG20 | SNV | Missense_Mutation | c.1032A>C | p.Glu344Asp | p.E344D | Q8N0X7 | protein_coding | tolerated(0.59) | benign(0.006) | TCGA-RD-A8NB-01 | Stomach | stomach adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | PD | |
SPG20 | SNV | Missense_Mutation | rs749355386 | c.123N>C | p.Glu41Asp | p.E41D | Q8N0X7 | protein_coding | deleterious(0.03) | benign(0.339) | TCGA-VQ-A8P2-01 | Stomach | stomach adenocarcinoma | Male | >=65 | III/IV | Unspecific | Complete Response | |
SPG20 | SNV | Missense_Mutation | c.1340A>C | p.Lys447Thr | p.K447T | Q8N0X7 | protein_coding | deleterious(0.03) | probably_damaging(0.936) | TCGA-VQ-A8P5-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Chemotherapy | fluorouracil | SD | |
SPG20 | SNV | Missense_Mutation | novel | c.1049N>A | p.Ile350Asn | p.I350N | Q8N0X7 | protein_coding | tolerated(0.09) | benign(0.284) | TCGA-VQ-A91K-01 | Stomach | stomach adenocarcinoma | Male | >=65 | III/IV | Chemotherapy | fluorouracil | CR |
SPG20 | deletion | Frame_Shift_Del | rs778573943 | c.696delT | p.Phe232LeufsTer2 | p.F232Lfs*2 | Q8N0X7 | protein_coding | TCGA-BR-4362-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
SPG20 | deletion | Frame_Shift_Del | novel | c.542delG | p.Gly181ValfsTer34 | p.G181Vfs*34 | Q8N0X7 | protein_coding | TCGA-BR-8078-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
SPG20 | deletion | Frame_Shift_Del | rs778573943 | c.696delN | p.Phe232LeufsTer2 | p.F232Lfs*2 | Q8N0X7 | protein_coding | TCGA-BR-8081-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
SPG20 | deletion | Frame_Shift_Del | rs778573943 | c.696delN | p.Phe232LeufsTer2 | p.F232Lfs*2 | Q8N0X7 | protein_coding | TCGA-BR-8361-01 | Stomach | stomach adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD | ||
SPG20 | deletion | Frame_Shift_Del | rs778573943 | c.696delT | p.Phe232LeufsTer2 | p.F232Lfs*2 | Q8N0X7 | protein_coding | TCGA-BR-8487-01 | Stomach | stomach adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD | ||
SPG20 | deletion | Frame_Shift_Del | rs778573943 | c.696delN | p.Phe232LeufsTer2 | p.F232Lfs*2 | Q8N0X7 | protein_coding | TCGA-CG-4305-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Chemotherapy | cisplatin | CR |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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