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Gene: HMCN1 |
Gene summary for HMCN1 |
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Gene information | Species | Human | Gene symbol | HMCN1 | Gene ID | 83872 |
Gene name | hemicentin 1 | |
Gene Alias | ARMD1 | |
Cytomap | 1q25.3-q31.1 | |
Gene Type | protein-coding | GO ID | GO:0003008 | UniProtAcc | Q96RW7 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
83872 | HMCN1 | HCC1_Meng | Human | Liver | HCC | 1.67e-34 | 1.05e-01 | 0.0246 |
83872 | HMCN1 | S014 | Human | Liver | HCC | 2.57e-06 | 1.11e+00 | 0.2254 |
83872 | HMCN1 | S015 | Human | Liver | HCC | 2.47e-02 | 6.66e-01 | 0.2375 |
83872 | HMCN1 | S016 | Human | Liver | HCC | 2.93e-26 | 1.32e+00 | 0.2243 |
83872 | HMCN1 | RNA-P10T2-P10T2-2 | Human | Lung | AAH | 1.73e-02 | 7.16e-01 | -0.1406 |
83872 | HMCN1 | RNA-P23T2-P23T2-2 | Human | Lung | MIAC | 2.54e-09 | 1.38e+00 | -0.028 |
83872 | HMCN1 | RNA-P7T1-P7T1-1 | Human | Lung | AIS | 1.88e-05 | 8.05e-01 | -0.0961 |
83872 | HMCN1 | RNA-P7T1-P7T1-2 | Human | Lung | AIS | 2.30e-08 | 9.42e-01 | -0.0876 |
83872 | HMCN1 | RNA-P7T1-P7T1-3 | Human | Lung | AIS | 4.12e-04 | 6.55e-01 | -0.0822 |
83872 | HMCN1 | RNA-P7T1-P7T1-4 | Human | Lung | AIS | 5.57e-09 | 8.81e-01 | -0.0809 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
HMCN1 | SNV | Missense_Mutation | c.16540G>T | p.Gly5514Trp | p.G5514W | Q96RW7 | protein_coding | deleterious(0) | probably_damaging(0.99) | TCGA-IR-A3LK-01 | Cervix | cervical & endocervical cancer | Female | >=65 | I/II | Chemotherapy | cisplatin | PD | |
HMCN1 | SNV | Missense_Mutation | c.6467G>C | p.Arg2156Thr | p.R2156T | Q96RW7 | protein_coding | deleterious(0.02) | benign(0) | TCGA-IR-A3LL-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR | |
HMCN1 | SNV | Missense_Mutation | rs771121234 | c.5410C>T | p.Arg1804Trp | p.R1804W | Q96RW7 | protein_coding | tolerated(0.05) | possibly_damaging(0.863) | TCGA-MY-A5BD-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
HMCN1 | SNV | Missense_Mutation | rs780752235 | c.8755C>T | p.His2919Tyr | p.H2919Y | Q96RW7 | protein_coding | tolerated(0.89) | possibly_damaging(0.462) | TCGA-Q1-A73O-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
HMCN1 | SNV | Missense_Mutation | rs148826584 | c.15545N>A | p.Arg5182Gln | p.R5182Q | Q96RW7 | protein_coding | deleterious(0.04) | probably_damaging(0.998) | TCGA-VS-A8EI-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
HMCN1 | SNV | Missense_Mutation | novel | c.3649N>T | p.His1217Tyr | p.H1217Y | Q96RW7 | protein_coding | tolerated(0.54) | benign(0.121) | TCGA-VS-A94Z-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
HMCN1 | SNV | Missense_Mutation | novel | c.4257C>G | p.Phe1419Leu | p.F1419L | Q96RW7 | protein_coding | tolerated(0.93) | benign(0.428) | TCGA-VS-A958-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
HMCN1 | SNV | Missense_Mutation | novel | c.16587N>C | p.Leu5529Phe | p.L5529F | Q96RW7 | protein_coding | deleterious(0.03) | possibly_damaging(0.834) | TCGA-VS-A9UD-01 | Cervix | cervical & endocervical cancer | Female | >=65 | III/IV | Chemotherapy | cisplatin | CR |
HMCN1 | SNV | Missense_Mutation | rs768205453 | c.11378G>A | p.Arg3793His | p.R3793H | Q96RW7 | protein_coding | deleterious(0.04) | probably_damaging(0.997) | TCGA-VS-A9UP-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | PD |
HMCN1 | SNV | Missense_Mutation | novel | c.5278N>T | p.Gly1760Cys | p.G1760C | Q96RW7 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-VS-A9UR-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | PD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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