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Gene: BBS9 |
Gene summary for BBS9 |
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Gene information | Species | Human | Gene symbol | BBS9 | Gene ID | 27241 |
Gene name | Bardet-Biedl syndrome 9 | |
Gene Alias | B1 | |
Cytomap | 7p14.3 | |
Gene Type | protein-coding | GO ID | GO:0003008 | UniProtAcc | Q3SYG4 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
27241 | BBS9 | CCI_3 | Human | Cervix | CC | 8.43e-08 | 5.33e-01 | 0.516 |
27241 | BBS9 | HTA11_3410_2000001011 | Human | Colorectum | AD | 3.51e-02 | -2.40e-01 | 0.0155 |
27241 | BBS9 | HTA11_10711_2000001011 | Human | Colorectum | AD | 2.71e-10 | 8.09e-01 | 0.0338 |
27241 | BBS9 | HTA11_6818_2000001011 | Human | Colorectum | AD | 2.87e-15 | 1.17e+00 | 0.0112 |
27241 | BBS9 | HTA11_6818_2000001021 | Human | Colorectum | AD | 1.89e-02 | 5.24e-01 | 0.0588 |
27241 | BBS9 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 1.85e-36 | 1.28e+00 | 0.3005 |
27241 | BBS9 | A015-C-203 | Human | Colorectum | FAP | 1.97e-10 | -1.47e-01 | -0.1294 |
27241 | BBS9 | A002-C-201 | Human | Colorectum | FAP | 2.05e-03 | -1.77e-01 | 0.0324 |
27241 | BBS9 | A001-C-108 | Human | Colorectum | FAP | 6.32e-06 | -1.38e-01 | -0.0272 |
27241 | BBS9 | A002-C-205 | Human | Colorectum | FAP | 7.73e-10 | -2.75e-01 | -0.1236 |
27241 | BBS9 | A015-C-006 | Human | Colorectum | FAP | 8.21e-06 | -2.45e-01 | -0.0994 |
27241 | BBS9 | A002-C-114 | Human | Colorectum | FAP | 8.86e-07 | -2.78e-01 | -0.1561 |
27241 | BBS9 | A015-C-104 | Human | Colorectum | FAP | 1.71e-10 | -1.65e-01 | -0.1899 |
27241 | BBS9 | A001-C-014 | Human | Colorectum | FAP | 1.91e-04 | -6.82e-02 | 0.0135 |
27241 | BBS9 | A002-C-016 | Human | Colorectum | FAP | 1.64e-07 | -1.16e-01 | 0.0521 |
27241 | BBS9 | A015-C-002 | Human | Colorectum | FAP | 6.54e-05 | -2.95e-01 | -0.0763 |
27241 | BBS9 | A002-C-116 | Human | Colorectum | FAP | 1.90e-13 | -2.70e-01 | -0.0452 |
27241 | BBS9 | A014-C-008 | Human | Colorectum | FAP | 5.02e-06 | -3.43e-01 | -0.191 |
27241 | BBS9 | A018-E-020 | Human | Colorectum | FAP | 1.29e-06 | -1.48e-01 | -0.2034 |
27241 | BBS9 | F034 | Human | Colorectum | FAP | 1.16e-05 | -1.23e-01 | -0.0665 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00454445 | Cervix | CC | fat cell differentiation | 53/2311 | 229/18723 | 3.72e-06 | 9.75e-05 | 53 |
GO:00454446 | Endometrium | EEC | fat cell differentiation | 39/2168 | 229/18723 | 8.69e-03 | 4.71e-02 | 39 |
GO:00454443 | Lung | IAC | fat cell differentiation | 42/2061 | 229/18723 | 6.19e-04 | 8.50e-03 | 42 |
GO:0060271 | Lung | IAC | cilium assembly | 55/2061 | 337/18723 | 1.84e-03 | 1.88e-02 | 55 |
GO:0044782 | Lung | IAC | cilium organization | 58/2061 | 368/18723 | 3.15e-03 | 2.75e-02 | 58 |
GO:004544411 | Lung | AIS | fat cell differentiation | 37/1849 | 229/18723 | 1.88e-03 | 2.08e-02 | 37 |
GO:00602711 | Lung | MIAC | cilium assembly | 37/967 | 337/18723 | 1.29e-05 | 9.85e-04 | 37 |
GO:00447821 | Lung | MIAC | cilium organization | 38/967 | 368/18723 | 3.93e-05 | 2.08e-03 | 38 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
BBS9 | SNV | Missense_Mutation | novel | c.527C>T | p.Pro176Leu | p.P176L | Q3SYG4 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-CV-7252-01 | Oral cavity | head & neck squamous cell carcinoma | Female | <65 | I/II | Unknown | Unknown | PD |
BBS9 | SNV | Missense_Mutation | novel | c.52N>C | p.Glu18Gln | p.E18Q | Q3SYG4 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-CV-7411-01 | Oral cavity | head & neck squamous cell carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
BBS9 | SNV | Missense_Mutation | novel | c.550C>T | p.Leu184Phe | p.L184F | Q3SYG4 | protein_coding | tolerated(0.12) | possibly_damaging(0.723) | TCGA-CV-A463-01 | Oral cavity | head & neck squamous cell carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
BBS9 | SNV | Missense_Mutation | novel | c.2501N>T | p.Pro834Leu | p.P834L | Q3SYG4 | protein_coding | tolerated(0.34) | possibly_damaging(0.576) | TCGA-CX-7219-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
BBS9 | SNV | Missense_Mutation | c.2456N>C | p.Leu819Ser | p.L819S | Q3SYG4 | protein_coding | deleterious(0) | probably_damaging(0.964) | TCGA-CH-5751-01 | Prostate | prostate adenocarcinoma | Male | >=65 | 10 | Hormone Therapy | bicalutamide | PD | |
BBS9 | SNV | Missense_Mutation | c.518G>T | p.Arg173Ile | p.R173I | Q3SYG4 | protein_coding | deleterious(0) | probably_damaging(0.991) | TCGA-VP-A87B-01 | Prostate | prostate adenocarcinoma | Male | <65 | 8 | Hormone Therapy | leuprolide | SD | |
BBS9 | SNV | Missense_Mutation | rs376641244 | c.2471G>A | p.Arg824His | p.R824H | Q3SYG4 | protein_coding | deleterious(0.03) | benign(0.109) | TCGA-YL-A9WY-01 | Prostate | prostate adenocarcinoma | Male | <65 | 9 | Hormone Therapy | casodex | PD |
BBS9 | SNV | Missense_Mutation | novel | c.2571A>C | p.Glu857Asp | p.E857D | Q3SYG4 | protein_coding | tolerated_low_confidence(0.46) | benign(0) | TCGA-B7-5816-01 | Stomach | stomach adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
BBS9 | SNV | Missense_Mutation | c.2068N>A | p.Ala690Thr | p.A690T | Q3SYG4 | protein_coding | tolerated(0.09) | benign(0.139) | TCGA-BR-4201-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Chemotherapy | cisplatin | SD | |
BBS9 | SNV | Missense_Mutation | c.1375G>A | p.Val459Ile | p.V459I | Q3SYG4 | protein_coding | tolerated(0.37) | benign(0.003) | TCGA-BR-4256-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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