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Gene: GNAI2 |
Gene summary for GNAI2 |
Gene summary. |
Gene information | Species | Human | Gene symbol | GNAI2 | Gene ID | 2771 |
Gene name | G protein subunit alpha i2 | |
Gene Alias | GIP | |
Cytomap | 3p21.31 | |
Gene Type | protein-coding | GO ID | GO:0000165 | UniProtAcc | B3KP24 |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
2771 | GNAI2 | GSM4909281 | Human | Breast | IDC | 1.79e-09 | 3.76e-01 | 0.21 |
2771 | GNAI2 | GSM4909296 | Human | Breast | IDC | 5.33e-05 | -1.03e-01 | 0.1524 |
2771 | GNAI2 | GSM4909304 | Human | Breast | IDC | 9.69e-04 | 2.91e-01 | 0.1636 |
2771 | GNAI2 | GSM4909308 | Human | Breast | IDC | 2.69e-02 | 1.32e-01 | 0.158 |
2771 | GNAI2 | GSM4909311 | Human | Breast | IDC | 1.08e-09 | -9.54e-02 | 0.1534 |
2771 | GNAI2 | GSM4909312 | Human | Breast | IDC | 1.46e-04 | -1.15e-01 | 0.1552 |
2771 | GNAI2 | GSM4909317 | Human | Breast | IDC | 5.89e-04 | 2.66e-01 | 0.1355 |
2771 | GNAI2 | GSM4909319 | Human | Breast | IDC | 3.67e-11 | -1.69e-01 | 0.1563 |
2771 | GNAI2 | GSM4909321 | Human | Breast | IDC | 2.33e-04 | 1.52e-02 | 0.1559 |
2771 | GNAI2 | M1 | Human | Breast | IDC | 1.17e-09 | 3.92e-01 | 0.1577 |
2771 | GNAI2 | NCCBC14 | Human | Breast | DCIS | 1.12e-03 | 2.43e-01 | 0.2021 |
2771 | GNAI2 | NCCBC3 | Human | Breast | DCIS | 2.91e-15 | 5.96e-01 | 0.1198 |
2771 | GNAI2 | NCCBC5 | Human | Breast | DCIS | 3.80e-07 | 3.01e-01 | 0.2046 |
2771 | GNAI2 | DCIS2 | Human | Breast | DCIS | 5.42e-70 | 3.19e-01 | 0.0085 |
2771 | GNAI2 | CA_HPV_1 | Human | Cervix | CC | 1.92e-05 | 9.36e-02 | 0.0264 |
2771 | GNAI2 | CA_HPV_3 | Human | Cervix | CC | 1.60e-05 | -8.02e-02 | 0.0414 |
2771 | GNAI2 | CCI_1 | Human | Cervix | CC | 5.93e-04 | -5.95e-01 | 0.528 |
2771 | GNAI2 | CCI_3 | Human | Cervix | CC | 1.73e-05 | -5.13e-01 | 0.516 |
2771 | GNAI2 | CCII_1 | Human | Cervix | CC | 9.52e-23 | -8.30e-01 | 0.3249 |
2771 | GNAI2 | Tumor | Human | Cervix | CC | 1.77e-18 | -5.90e-01 | 0.1241 |
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Transcriptomic changes along malignancy continuum. |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:200123314 | Breast | IDC | regulation of apoptotic signaling pathway | 82/1434 | 356/18723 | 6.27e-20 | 5.93e-17 | 82 |
GO:005134613 | Breast | IDC | negative regulation of hydrolase activity | 71/1434 | 379/18723 | 1.33e-12 | 2.90e-10 | 71 |
GO:200123414 | Breast | IDC | negative regulation of apoptotic signaling pathway | 49/1434 | 224/18723 | 1.45e-11 | 2.58e-09 | 49 |
GO:003166714 | Breast | IDC | response to nutrient levels | 62/1434 | 474/18723 | 2.33e-05 | 5.57e-04 | 62 |
GO:000758412 | Breast | IDC | response to nutrient | 29/1434 | 174/18723 | 5.69e-05 | 1.20e-03 | 29 |
GO:007259313 | Breast | IDC | reactive oxygen species metabolic process | 36/1434 | 239/18723 | 7.16e-05 | 1.43e-03 | 36 |
GO:00434348 | Breast | IDC | response to peptide hormone | 54/1434 | 414/18723 | 8.25e-05 | 1.61e-03 | 54 |
GO:005087813 | Breast | IDC | regulation of body fluid levels | 50/1434 | 379/18723 | 1.12e-04 | 2.10e-03 | 50 |
GO:003530414 | Breast | IDC | regulation of protein dephosphorylation | 18/1434 | 90/18723 | 1.39e-04 | 2.48e-03 | 18 |
GO:001095913 | Breast | IDC | regulation of metal ion transport | 52/1434 | 406/18723 | 1.76e-04 | 2.97e-03 | 52 |
GO:00703713 | Breast | IDC | ERK1 and ERK2 cascade | 43/1434 | 330/18723 | 4.28e-04 | 5.84e-03 | 43 |
GO:00459369 | Breast | IDC | negative regulation of phosphate metabolic process | 53/1434 | 441/18723 | 7.21e-04 | 8.79e-03 | 53 |
GO:00105639 | Breast | IDC | negative regulation of phosphorus metabolic process | 53/1434 | 442/18723 | 7.60e-04 | 9.25e-03 | 53 |
GO:003530813 | Breast | IDC | negative regulation of protein dephosphorylation | 9/1434 | 34/18723 | 8.01e-04 | 9.58e-03 | 9 |
GO:004366613 | Breast | IDC | regulation of phosphoprotein phosphatase activity | 12/1434 | 58/18723 | 1.27e-03 | 1.35e-02 | 12 |
GO:200037913 | Breast | IDC | positive regulation of reactive oxygen species metabolic process | 14/1434 | 76/18723 | 1.71e-03 | 1.67e-02 | 14 |
GO:00486592 | Breast | IDC | smooth muscle cell proliferation | 26/1434 | 184/18723 | 1.77e-03 | 1.72e-02 | 26 |
GO:00486602 | Breast | IDC | regulation of smooth muscle cell proliferation | 25/1434 | 180/18723 | 2.71e-03 | 2.41e-02 | 25 |
GO:0051924 | Breast | IDC | regulation of calcium ion transport | 32/1434 | 255/18723 | 3.94e-03 | 3.22e-02 | 32 |
GO:200037713 | Breast | IDC | regulation of reactive oxygen species metabolic process | 22/1434 | 157/18723 | 4.24e-03 | 3.31e-02 | 22 |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa049351 | Colorectum | MSS | Growth hormone synthesis, secretion and action | 42/1875 | 120/8465 | 8.17e-04 | 5.16e-03 | 3.16e-03 | 42 |
hsa047285 | Colorectum | MSS | Dopaminergic synapse | 45/1875 | 132/8465 | 1.02e-03 | 5.94e-03 | 3.64e-03 | 45 |
hsa040155 | Colorectum | MSS | Rap1 signaling pathway | 66/1875 | 210/8465 | 1.03e-03 | 5.94e-03 | 3.64e-03 | 66 |
hsa049285 | Colorectum | MSS | Parathyroid hormone synthesis, secretion and action | 37/1875 | 106/8465 | 1.72e-03 | 9.13e-03 | 5.59e-03 | 37 |
hsa040713 | Colorectum | MSS | Sphingolipid signaling pathway | 40/1875 | 121/8465 | 3.56e-03 | 1.64e-02 | 1.01e-02 | 40 |
hsa049715 | Colorectum | MSS | Gastric acid secretion | 27/1875 | 76/8465 | 5.20e-03 | 2.18e-02 | 1.34e-02 | 27 |
hsa040221 | Colorectum | MSS | cGMP-PKG signaling pathway | 51/1875 | 167/8465 | 6.83e-03 | 2.73e-02 | 1.67e-02 | 51 |
hsa047131 | Colorectum | MSS | Circadian entrainment | 32/1875 | 97/8465 | 8.84e-03 | 3.25e-02 | 1.99e-02 | 32 |
hsa043603 | Colorectum | MSS | Axon guidance | 54/1875 | 182/8465 | 1.03e-02 | 3.69e-02 | 2.26e-02 | 54 |
hsa047251 | Colorectum | MSS | Cholinergic synapse | 36/1875 | 113/8465 | 1.05e-02 | 3.69e-02 | 2.26e-02 | 36 |
hsa049261 | Colorectum | MSS | Relaxin signaling pathway | 40/1875 | 129/8465 | 1.18e-02 | 3.99e-02 | 2.44e-02 | 40 |
hsa046705 | Colorectum | MSS | Leukocyte transendothelial migration | 36/1875 | 114/8465 | 1.21e-02 | 4.02e-02 | 2.46e-02 | 36 |
hsa0501226 | Endometrium | AEH | Parkinson disease | 115/1197 | 266/8465 | 6.24e-32 | 1.01e-29 | 7.42e-30 | 115 |
hsa0467026 | Endometrium | AEH | Leukocyte transendothelial migration | 37/1197 | 114/8465 | 4.51e-07 | 6.11e-06 | 4.47e-06 | 37 |
hsa0401514 | Endometrium | AEH | Rap1 signaling pathway | 49/1197 | 210/8465 | 2.03e-04 | 1.78e-03 | 1.30e-03 | 49 |
hsa0491525 | Endometrium | AEH | Estrogen signaling pathway | 35/1197 | 138/8465 | 3.10e-04 | 2.40e-03 | 1.75e-03 | 35 |
hsa0436010 | Endometrium | AEH | Axon guidance | 39/1197 | 182/8465 | 4.47e-03 | 2.46e-02 | 1.80e-02 | 39 |
hsa0517018 | Endometrium | AEH | Human immunodeficiency virus 1 infection | 43/1197 | 212/8465 | 8.19e-03 | 4.22e-02 | 3.09e-02 | 43 |
hsa0516320 | Endometrium | AEH | Human cytomegalovirus infection | 45/1197 | 225/8465 | 8.98e-03 | 4.56e-02 | 3.34e-02 | 45 |
hsa05012111 | Endometrium | AEH | Parkinson disease | 115/1197 | 266/8465 | 6.24e-32 | 1.01e-29 | 7.42e-30 | 115 |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
GNAI2 | SNV | Missense_Mutation | novel | c.889T>C | p.Tyr297His | p.Y297H | P04899 | protein_coding | deleterious(0.01) | probably_damaging(0.959) | TCGA-5T-A9QA-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | taxol | SD |
GNAI2 | SNV | Missense_Mutation | c.109N>A | p.Leu37Met | p.L37M | P04899 | protein_coding | deleterious(0) | probably_damaging(0.971) | TCGA-BH-A0DL-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | cytoxan | CR | |
GNAI2 | SNV | Missense_Mutation | c.292N>T | p.Pro98Ser | p.P98S | P04899 | protein_coding | tolerated(0.37) | benign(0.005) | TCGA-BH-A1FJ-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD | |
GNAI2 | SNV | Missense_Mutation | novel | c.706N>T | p.Ala236Ser | p.A236S | P04899 | protein_coding | tolerated(0.38) | benign(0.115) | TCGA-S3-AA15-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | adriamycin | CR |
GNAI2 | deletion | Frame_Shift_Del | novel | c.406delN | p.Gly136ValfsTer22 | p.G136Vfs*22 | P04899 | protein_coding | TCGA-D8-A27V-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | tamoxiphen | SD | ||
GNAI2 | SNV | Missense_Mutation | rs781807470 | c.475N>A | p.Asp159Asn | p.D159N | P04899 | protein_coding | tolerated(0.19) | benign(0.003) | TCGA-C5-A1ME-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
GNAI2 | SNV | Missense_Mutation | rs781986131 | c.200G>A | p.Arg67Gln | p.R67Q | P04899 | protein_coding | tolerated(0.39) | benign(0.006) | TCGA-5M-AAT6-01 | Colorectum | colon adenocarcinoma | Female | <65 | III/IV | Unknown | Unknown | PD |
GNAI2 | SNV | Missense_Mutation | c.1055N>A | p.Cys352Tyr | p.C352Y | P04899 | protein_coding | tolerated(0.06) | possibly_damaging(0.776) | TCGA-AD-6889-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Chemotherapy | xeloda | PD | |
GNAI2 | SNV | Missense_Mutation | c.878N>A | p.Gly293Glu | p.G293E | P04899 | protein_coding | deleterious(0) | probably_damaging(0.994) | TCGA-AD-6895-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Unknown | Unknown | SD | |
GNAI2 | SNV | Missense_Mutation | rs782786744 | c.979G>A | p.Ala327Thr | p.A327T | P04899 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-AZ-4313-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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