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Gene: ATP5O |
Gene summary for ATP5O |
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Gene information | Species | Human | Gene symbol | ATP5O | Gene ID | 539 |
Gene name | ATP synthase peripheral stalk subunit OSCP | |
Gene Alias | ATP5O | |
Cytomap | 21q22.11 | |
Gene Type | protein-coding | GO ID | GO:0006091 | UniProtAcc | P48047 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
539 | ATP5O | GSM4909281 | Human | Breast | IDC | 5.35e-20 | -3.69e-01 | 0.21 |
539 | ATP5O | GSM4909282 | Human | Breast | IDC | 2.86e-19 | -3.69e-01 | -0.0288 |
539 | ATP5O | GSM4909285 | Human | Breast | IDC | 2.86e-19 | -3.69e-01 | 0.21 |
539 | ATP5O | GSM4909286 | Human | Breast | IDC | 2.86e-19 | -3.69e-01 | 0.1081 |
539 | ATP5O | GSM4909287 | Human | Breast | IDC | 1.36e-20 | -3.69e-01 | 0.2057 |
539 | ATP5O | GSM4909288 | Human | Breast | IDC | 1.12e-04 | -3.69e-01 | 0.0988 |
539 | ATP5O | GSM4909289 | Human | Breast | IDC | 3.57e-03 | -3.69e-01 | 0.1064 |
539 | ATP5O | GSM4909290 | Human | Breast | IDC | 1.04e-14 | -3.69e-01 | 0.2096 |
539 | ATP5O | GSM4909291 | Human | Breast | IDC | 6.88e-12 | -3.69e-01 | 0.1753 |
539 | ATP5O | GSM4909293 | Human | Breast | IDC | 6.58e-19 | -3.69e-01 | 0.1581 |
539 | ATP5O | GSM4909294 | Human | Breast | IDC | 6.58e-19 | -3.69e-01 | 0.2022 |
539 | ATP5O | GSM4909295 | Human | Breast | IDC | 2.66e-09 | -3.69e-01 | 0.0898 |
539 | ATP5O | GSM4909296 | Human | Breast | IDC | 5.35e-20 | -3.69e-01 | 0.1524 |
539 | ATP5O | GSM4909297 | Human | Breast | IDC | 1.24e-19 | -3.69e-01 | 0.1517 |
539 | ATP5O | GSM4909298 | Human | Breast | IDC | 3.47e-18 | -3.69e-01 | 0.1551 |
539 | ATP5O | GSM4909299 | Human | Breast | IDC | 1.51e-18 | -3.69e-01 | 0.035 |
539 | ATP5O | GSM4909300 | Human | Breast | IDC | 3.46e-08 | -3.69e-01 | 0.0334 |
539 | ATP5O | GSM4909301 | Human | Breast | IDC | 6.58e-19 | -3.69e-01 | 0.1577 |
539 | ATP5O | GSM4909302 | Human | Breast | IDC | 2.70e-20 | -3.69e-01 | 0.1545 |
539 | ATP5O | GSM4909303 | Human | Breast | IDC | 2.35e-05 | -3.69e-01 | 0.0438 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa050121 | Colorectum | AD | Parkinson disease | 147/2092 | 266/8465 | 2.53e-27 | 8.48e-25 | 5.41e-25 | 147 |
hsa052081 | Colorectum | AD | Chemical carcinogenesis - reactive oxygen species | 126/2092 | 223/8465 | 1.01e-24 | 1.68e-22 | 1.07e-22 | 126 |
hsa001901 | Colorectum | AD | Oxidative phosphorylation | 86/2092 | 134/8465 | 2.47e-22 | 2.76e-20 | 1.76e-20 | 86 |
hsa054151 | Colorectum | AD | Diabetic cardiomyopathy | 114/2092 | 203/8465 | 3.65e-22 | 3.06e-20 | 1.95e-20 | 114 |
hsa050101 | Colorectum | AD | Alzheimer disease | 174/2092 | 384/8465 | 1.82e-19 | 9.26e-18 | 5.91e-18 | 174 |
hsa050161 | Colorectum | AD | Huntington disease | 147/2092 | 306/8465 | 1.93e-19 | 9.26e-18 | 5.91e-18 | 147 |
hsa047141 | Colorectum | AD | Thermogenesis | 120/2092 | 232/8465 | 2.76e-19 | 1.16e-17 | 7.37e-18 | 120 |
hsa050201 | Colorectum | AD | Prion disease | 133/2092 | 273/8465 | 2.47e-18 | 8.29e-17 | 5.29e-17 | 133 |
hsa050141 | Colorectum | AD | Amyotrophic lateral sclerosis | 164/2092 | 364/8465 | 4.28e-18 | 1.27e-16 | 8.09e-17 | 164 |
hsa050221 | Colorectum | AD | Pathways of neurodegeneration - multiple diseases | 201/2092 | 476/8465 | 4.54e-18 | 1.27e-16 | 8.09e-17 | 201 |
hsa050122 | Colorectum | SER | Parkinson disease | 132/1580 | 266/8465 | 2.72e-31 | 9.03e-29 | 6.55e-29 | 132 |
hsa054152 | Colorectum | SER | Diabetic cardiomyopathy | 103/1580 | 203/8465 | 1.45e-25 | 1.61e-23 | 1.17e-23 | 103 |
hsa001902 | Colorectum | SER | Oxidative phosphorylation | 79/1580 | 134/8465 | 1.98e-25 | 1.64e-23 | 1.19e-23 | 79 |
hsa050202 | Colorectum | SER | Prion disease | 119/1580 | 273/8465 | 4.61e-22 | 3.06e-20 | 2.22e-20 | 119 |
hsa047142 | Colorectum | SER | Thermogenesis | 106/1580 | 232/8465 | 1.15e-21 | 6.34e-20 | 4.61e-20 | 106 |
hsa052082 | Colorectum | SER | Chemical carcinogenesis - reactive oxygen species | 103/1580 | 223/8465 | 1.60e-21 | 7.57e-20 | 5.50e-20 | 103 |
hsa050162 | Colorectum | SER | Huntington disease | 127/1580 | 306/8465 | 3.29e-21 | 1.37e-19 | 9.92e-20 | 127 |
hsa050102 | Colorectum | SER | Alzheimer disease | 146/1580 | 384/8465 | 6.52e-20 | 2.40e-18 | 1.75e-18 | 146 |
hsa050222 | Colorectum | SER | Pathways of neurodegeneration - multiple diseases | 168/1580 | 476/8465 | 6.23e-19 | 2.07e-17 | 1.50e-17 | 168 |
hsa050142 | Colorectum | SER | Amyotrophic lateral sclerosis | 138/1580 | 364/8465 | 9.89e-19 | 2.99e-17 | 2.17e-17 | 138 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
ATP5O | SNV | Missense_Mutation | c.122A>G | p.Tyr41Cys | p.Y41C | P48047 | protein_coding | deleterious(0.03) | probably_damaging(0.979) | TCGA-A8-A09Z-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
ATP5O | SNV | Missense_Mutation | c.620G>T | p.Arg207Met | p.R207M | P48047 | protein_coding | deleterious(0.01) | possibly_damaging(0.724) | TCGA-D8-A1XK-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicine+cyclophosphamide | SD | |
ATP5O | deletion | Frame_Shift_Del | novel | c.72delN | p.Phe24LeufsTer5 | p.F24Lfs*5 | P48047 | protein_coding | TCGA-EW-A2FV-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | docetaxel | SD | ||
ATP5O | SNV | Missense_Mutation | novel | c.41N>A | p.Arg14Gln | p.R14Q | P48047 | protein_coding | tolerated(0.1) | benign(0.164) | TCGA-C5-A1BQ-01 | Cervix | cervical & endocervical cancer | Female | >=65 | III/IV | Chemotherapy | cisplatin | CR |
ATP5O | SNV | Missense_Mutation | c.515N>C | p.Lys172Thr | p.K172T | P48047 | protein_coding | tolerated(0.12) | benign(0.345) | TCGA-AA-A010-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Chemotherapy | folinic | CR | |
ATP5O | SNV | Missense_Mutation | c.416N>C | p.Val139Ala | p.V139A | P48047 | protein_coding | deleterious(0.03) | benign(0.405) | TCGA-AA-A01R-01 | Colorectum | colon adenocarcinoma | Male | <65 | III/IV | Chemotherapy | 5-fluorouracil | PD | |
ATP5O | SNV | Missense_Mutation | c.419C>A | p.Pro140His | p.P140H | P48047 | protein_coding | tolerated(0.11) | possibly_damaging(0.748) | TCGA-F4-6856-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Ancillary | leucovorin | CR | |
ATP5O | SNV | Missense_Mutation | rs377497870 | c.628N>T | p.Arg210Trp | p.R210W | P48047 | protein_coding | tolerated(0.16) | benign(0.003) | TCGA-WS-AB45-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
ATP5O | SNV | Missense_Mutation | rs191960490 | c.536C>T | p.Pro179Leu | p.P179L | P48047 | protein_coding | tolerated(0.07) | benign(0.01) | TCGA-B5-A3FC-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
ATP5O | SNV | Missense_Mutation | novel | c.104N>G | p.Tyr35Cys | p.Y35C | P48047 | protein_coding | tolerated(0.06) | probably_damaging(0.922) | TCGA-D1-A175-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Chemotherapy | paclitaxel | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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