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Gene: PLEKHA1 |
Gene summary for PLEKHA1 |
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Gene information | Species | Human | Gene symbol | PLEKHA1 | Gene ID | 59338 |
Gene name | pleckstrin homology domain containing A1 | |
Gene Alias | TAPP1 | |
Cytomap | 10q26.13 | |
Gene Type | protein-coding | GO ID | GO:0000003 | UniProtAcc | Q9HB21 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
59338 | PLEKHA1 | LZE4T | Human | Esophagus | ESCC | 1.74e-18 | 6.88e-01 | 0.0811 |
59338 | PLEKHA1 | LZE5T | Human | Esophagus | ESCC | 1.65e-02 | 9.05e-02 | 0.0514 |
59338 | PLEKHA1 | LZE8T | Human | Esophagus | ESCC | 7.90e-03 | 9.36e-02 | 0.067 |
59338 | PLEKHA1 | LZE22T | Human | Esophagus | ESCC | 1.17e-06 | 4.24e-01 | 0.068 |
59338 | PLEKHA1 | LZE24T | Human | Esophagus | ESCC | 3.84e-18 | 5.99e-01 | 0.0596 |
59338 | PLEKHA1 | P1T-E | Human | Esophagus | ESCC | 2.09e-10 | 7.37e-01 | 0.0875 |
59338 | PLEKHA1 | P2T-E | Human | Esophagus | ESCC | 3.85e-29 | 6.53e-01 | 0.1177 |
59338 | PLEKHA1 | P4T-E | Human | Esophagus | ESCC | 1.27e-27 | 8.39e-01 | 0.1323 |
59338 | PLEKHA1 | P5T-E | Human | Esophagus | ESCC | 1.35e-31 | 7.00e-01 | 0.1327 |
59338 | PLEKHA1 | P8T-E | Human | Esophagus | ESCC | 6.00e-44 | 8.67e-01 | 0.0889 |
59338 | PLEKHA1 | P9T-E | Human | Esophagus | ESCC | 9.80e-17 | 4.75e-01 | 0.1131 |
59338 | PLEKHA1 | P10T-E | Human | Esophagus | ESCC | 6.67e-35 | 7.41e-01 | 0.116 |
59338 | PLEKHA1 | P11T-E | Human | Esophagus | ESCC | 5.41e-11 | 5.45e-01 | 0.1426 |
59338 | PLEKHA1 | P12T-E | Human | Esophagus | ESCC | 1.08e-49 | 1.25e+00 | 0.1122 |
59338 | PLEKHA1 | P15T-E | Human | Esophagus | ESCC | 7.54e-21 | 5.76e-01 | 0.1149 |
59338 | PLEKHA1 | P16T-E | Human | Esophagus | ESCC | 2.82e-23 | 3.15e-01 | 0.1153 |
59338 | PLEKHA1 | P17T-E | Human | Esophagus | ESCC | 1.35e-06 | 4.84e-01 | 0.1278 |
59338 | PLEKHA1 | P19T-E | Human | Esophagus | ESCC | 6.99e-06 | 7.17e-01 | 0.1662 |
59338 | PLEKHA1 | P20T-E | Human | Esophagus | ESCC | 1.52e-31 | 8.70e-01 | 0.1124 |
59338 | PLEKHA1 | P21T-E | Human | Esophagus | ESCC | 2.72e-31 | 5.19e-01 | 0.1617 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:004851124 | Thyroid | ATC | rhythmic process | 141/6293 | 298/18723 | 5.58e-07 | 7.93e-06 | 141 |
GO:004860825 | Thyroid | ATC | reproductive structure development | 190/6293 | 424/18723 | 8.40e-07 | 1.11e-05 | 190 |
GO:004800815 | Thyroid | ATC | platelet-derived growth factor receptor signaling pathway | 36/6293 | 56/18723 | 2.57e-06 | 3.00e-05 | 36 |
GO:006032511 | Thyroid | ATC | face morphogenesis | 21/6293 | 28/18723 | 8.94e-06 | 8.95e-05 | 21 |
GO:004654621 | Thyroid | ATC | development of primary male sexual characteristics | 72/6293 | 142/18723 | 1.85e-05 | 1.69e-04 | 72 |
GO:001017111 | Thyroid | ATC | body morphogenesis | 28/6293 | 43/18723 | 2.35e-05 | 2.06e-04 | 28 |
GO:000858421 | Thyroid | ATC | male gonad development | 71/6293 | 141/18723 | 2.83e-05 | 2.38e-04 | 71 |
GO:003152921 | Thyroid | ATC | ruffle organization | 34/6293 | 56/18723 | 2.92e-05 | 2.45e-04 | 34 |
GO:006032411 | Thyroid | ATC | face development | 28/6293 | 44/18723 | 4.39e-05 | 3.54e-04 | 28 |
GO:006032311 | Thyroid | ATC | head morphogenesis | 22/6293 | 32/18723 | 5.14e-05 | 3.99e-04 | 22 |
GO:00487053 | Thyroid | ATC | skeletal system morphogenesis | 101/6293 | 220/18723 | 9.48e-05 | 6.93e-04 | 101 |
GO:004666112 | Thyroid | ATC | male sex differentiation | 77/6293 | 165/18723 | 3.27e-04 | 2.04e-03 | 77 |
GO:000840613 | Thyroid | ATC | gonad development | 96/6293 | 221/18723 | 1.40e-03 | 7.25e-03 | 96 |
GO:003526414 | Thyroid | ATC | multicellular organism growth | 61/6293 | 132/18723 | 1.73e-03 | 8.66e-03 | 61 |
GO:00600211 | Thyroid | ATC | roof of mouth development | 42/6293 | 85/18723 | 1.83e-03 | 9.02e-03 | 42 |
GO:00451374 | Thyroid | ATC | development of primary sexual characteristics | 97/6293 | 227/18723 | 2.47e-03 | 1.14e-02 | 97 |
GO:00466603 | Thyroid | ATC | female sex differentiation | 51/6293 | 114/18723 | 8.62e-03 | 3.28e-02 | 51 |
GO:00333272 | Thyroid | ATC | Leydig cell differentiation | 8/6293 | 11/18723 | 9.31e-03 | 3.44e-02 | 8 |
GO:00085853 | Thyroid | ATC | female gonad development | 43/6293 | 95/18723 | 1.19e-02 | 4.22e-02 | 43 |
GO:004349116 | Thyroid | ATC | protein kinase B signaling | 87/6293 | 211/18723 | 1.20e-02 | 4.27e-02 | 87 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
PLEKHA1 | SNV | Missense_Mutation | c.1162N>C | p.Asp388His | p.D388H | Q9HB21 | protein_coding | tolerated(0.1) | benign(0.001) | TCGA-A2-A0YH-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | adriamycin | SD | |
PLEKHA1 | SNV | Missense_Mutation | c.358G>C | p.Asp120His | p.D120H | Q9HB21 | protein_coding | deleterious(0.01) | possibly_damaging(0.497) | TCGA-BH-A203-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | PD | |
PLEKHA1 | SNV | Missense_Mutation | c.635N>G | p.Tyr212Cys | p.Y212C | Q9HB21 | protein_coding | deleterious(0) | probably_damaging(0.998) | TCGA-E2-A14S-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Chemotherapy | cytoxan | SD | |
PLEKHA1 | deletion | Frame_Shift_Del | novel | c.36delN | p.Leu14Ter | p.L14* | Q9HB21 | protein_coding | TCGA-E2-A15P-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | arimidex | SD | ||
PLEKHA1 | SNV | Missense_Mutation | rs374805648 | c.389N>A | p.Arg130His | p.R130H | Q9HB21 | protein_coding | tolerated(0.14) | benign(0.411) | TCGA-C5-A1MK-01 | Cervix | cervical & endocervical cancer | Female | >=65 | III/IV | Chemotherapy | carboplatin | PD |
PLEKHA1 | SNV | Missense_Mutation | c.107N>G | p.Glu36Gly | p.E36G | Q9HB21 | protein_coding | tolerated(0.45) | benign(0.01) | TCGA-AA-3496-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
PLEKHA1 | SNV | Missense_Mutation | c.487N>C | p.Cys163Arg | p.C163R | Q9HB21 | protein_coding | tolerated(0.53) | benign(0.039) | TCGA-AZ-4615-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Chemotherapy | xeloda | PD | |
PLEKHA1 | SNV | Missense_Mutation | rs765456729 | c.934N>A | p.Ala312Thr | p.A312T | Q9HB21 | protein_coding | tolerated(0.39) | benign(0) | TCGA-AZ-4615-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Chemotherapy | xeloda | PD |
PLEKHA1 | SNV | Missense_Mutation | rs771484933 | c.985C>T | p.Arg329Cys | p.R329C | Q9HB21 | protein_coding | tolerated(0.19) | benign(0) | TCGA-F4-6459-01 | Colorectum | colon adenocarcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
PLEKHA1 | SNV | Missense_Mutation | rs769179533 | c.26N>A | p.Arg9His | p.R9H | Q9HB21 | protein_coding | deleterious(0.03) | possibly_damaging(0.802) | TCGA-EI-6917-01 | Colorectum | rectum adenocarcinoma | Male | <65 | III/IV | Chemotherapy | 5fluorouracil+oxaciplatina+l-folinian | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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