GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:001095119 | Esophagus | ESCC | negative regulation of endopeptidase activity | 135/8552 | 252/18723 | 6.86e-03 | 2.51e-02 | 135 |
GO:00331383 | Esophagus | ESCC | positive regulation of peptidyl-serine phosphorylation | 61/8552 | 108/18723 | 1.54e-02 | 4.96e-02 | 61 |
GO:190230710 | Esophagus | ESCC | positive regulation of sodium ion transmembrane transport | 15/8552 | 21/18723 | 1.54e-02 | 4.96e-02 | 15 |
GO:2000169 | Liver | NAFLD | regulation of peptidyl-cysteine S-nitrosylation | 6/1882 | 10/18723 | 1.50e-04 | 2.78e-03 | 6 |
GO:00170141 | Liver | NAFLD | protein nitrosylation | 7/1882 | 16/18723 | 5.17e-04 | 7.15e-03 | 7 |
GO:00181191 | Liver | NAFLD | peptidyl-cysteine S-nitrosylation | 7/1882 | 16/18723 | 5.17e-04 | 7.15e-03 | 7 |
GO:00462097 | Liver | NAFLD | nitric oxide metabolic process | 18/1882 | 81/18723 | 9.60e-04 | 1.14e-02 | 18 |
GO:00454287 | Liver | NAFLD | regulation of nitric oxide biosynthetic process | 15/1882 | 62/18723 | 9.92e-04 | 1.18e-02 | 15 |
GO:20010577 | Liver | NAFLD | reactive nitrogen species metabolic process | 18/1882 | 82/18723 | 1.12e-03 | 1.29e-02 | 18 |
GO:00801647 | Liver | NAFLD | regulation of nitric oxide metabolic process | 15/1882 | 64/18723 | 1.40e-03 | 1.57e-02 | 15 |
GO:00454296 | Liver | NAFLD | positive regulation of nitric oxide biosynthetic process | 11/1882 | 40/18723 | 1.51e-03 | 1.64e-02 | 11 |
GO:19044076 | Liver | NAFLD | positive regulation of nitric oxide metabolic process | 11/1882 | 41/18723 | 1.88e-03 | 1.92e-02 | 11 |
GO:00068097 | Liver | NAFLD | nitric oxide biosynthetic process | 16/1882 | 76/18723 | 3.22e-03 | 2.87e-02 | 16 |
GO:00347643 | Liver | NAFLD | positive regulation of transmembrane transport | 35/1882 | 219/18723 | 3.92e-03 | 3.32e-02 | 35 |
GO:00989745 | Liver | NAFLD | postsynaptic actin cytoskeleton organization | 5/1882 | 12/18723 | 4.41e-03 | 3.57e-02 | 5 |
GO:009897411 | Liver | Cirrhotic | postsynaptic actin cytoskeleton organization | 9/4634 | 12/18723 | 3.59e-04 | 3.03e-03 | 9 |
GO:00989016 | Liver | Cirrhotic | regulation of cardiac muscle cell action potential | 15/4634 | 27/18723 | 5.96e-04 | 4.63e-03 | 15 |
GO:200105712 | Liver | Cirrhotic | reactive nitrogen species metabolic process | 34/4634 | 82/18723 | 6.36e-04 | 4.85e-03 | 34 |
GO:004620912 | Liver | Cirrhotic | nitric oxide metabolic process | 33/4634 | 81/18723 | 1.09e-03 | 7.59e-03 | 33 |
GO:000680912 | Liver | Cirrhotic | nitric oxide biosynthetic process | 31/4634 | 76/18723 | 1.49e-03 | 9.87e-03 | 31 |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa05014210 | Esophagus | ESCC | Amyotrophic lateral sclerosis | 266/4205 | 364/8465 | 1.31e-20 | 2.20e-18 | 1.13e-18 | 266 |
hsa05022210 | Esophagus | ESCC | Pathways of neurodegeneration - multiple diseases | 318/4205 | 476/8465 | 6.10e-15 | 2.04e-13 | 1.05e-13 | 318 |
hsa05010210 | Esophagus | ESCC | Alzheimer disease | 263/4205 | 384/8465 | 1.80e-14 | 5.47e-13 | 2.80e-13 | 263 |
hsa0414530 | Esophagus | ESCC | Phagosome | 100/4205 | 152/8465 | 3.81e-05 | 1.72e-04 | 8.82e-05 | 100 |
hsa049268 | Esophagus | ESCC | Relaxin signaling pathway | 81/4205 | 129/8465 | 1.72e-03 | 5.09e-03 | 2.61e-03 | 81 |
hsa0501438 | Esophagus | ESCC | Amyotrophic lateral sclerosis | 266/4205 | 364/8465 | 1.31e-20 | 2.20e-18 | 1.13e-18 | 266 |
hsa0502238 | Esophagus | ESCC | Pathways of neurodegeneration - multiple diseases | 318/4205 | 476/8465 | 6.10e-15 | 2.04e-13 | 1.05e-13 | 318 |
hsa0501038 | Esophagus | ESCC | Alzheimer disease | 263/4205 | 384/8465 | 1.80e-14 | 5.47e-13 | 2.80e-13 | 263 |
hsa04145114 | Esophagus | ESCC | Phagosome | 100/4205 | 152/8465 | 3.81e-05 | 1.72e-04 | 8.82e-05 | 100 |
hsa0492616 | Esophagus | ESCC | Relaxin signaling pathway | 81/4205 | 129/8465 | 1.72e-03 | 5.09e-03 | 2.61e-03 | 81 |
hsa0501422 | Liver | HCC | Amyotrophic lateral sclerosis | 252/4020 | 364/8465 | 8.85e-18 | 7.41e-16 | 4.12e-16 | 252 |
hsa0501022 | Liver | HCC | Alzheimer disease | 254/4020 | 384/8465 | 3.75e-14 | 8.97e-13 | 4.99e-13 | 254 |
hsa0502222 | Liver | HCC | Pathways of neurodegeneration - multiple diseases | 298/4020 | 476/8465 | 6.59e-12 | 1.30e-10 | 7.22e-11 | 298 |
hsa0414521 | Liver | HCC | Phagosome | 93/4020 | 152/8465 | 4.27e-04 | 1.88e-03 | 1.05e-03 | 93 |
hsa0033021 | Liver | HCC | Arginine and proline metabolism | 33/4020 | 50/8465 | 6.28e-03 | 1.77e-02 | 9.83e-03 | 33 |
hsa049262 | Liver | HCC | Relaxin signaling pathway | 75/4020 | 129/8465 | 9.33e-03 | 2.46e-02 | 1.37e-02 | 75 |
hsa0501432 | Liver | HCC | Amyotrophic lateral sclerosis | 252/4020 | 364/8465 | 8.85e-18 | 7.41e-16 | 4.12e-16 | 252 |
hsa0501032 | Liver | HCC | Alzheimer disease | 254/4020 | 384/8465 | 3.75e-14 | 8.97e-13 | 4.99e-13 | 254 |
hsa0502232 | Liver | HCC | Pathways of neurodegeneration - multiple diseases | 298/4020 | 476/8465 | 6.59e-12 | 1.30e-10 | 7.22e-11 | 298 |
hsa0414531 | Liver | HCC | Phagosome | 93/4020 | 152/8465 | 4.27e-04 | 1.88e-03 | 1.05e-03 | 93 |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
NOS1 | SNV | Missense_Mutation | | c.3037N>C | p.Val1013Leu | p.V1013L | P29475 | protein_coding | tolerated(0.32) | benign(0) | TCGA-A8-A07R-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Ancillary | zoledronic | SD |
NOS1 | SNV | Missense_Mutation | | c.752N>A | p.Pro251His | p.P251H | P29475 | protein_coding | tolerated_low_confidence(0.26) | benign(0.176) | TCGA-A8-A09Z-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
NOS1 | SNV | Missense_Mutation | novel | c.703N>T | p.Asp235Tyr | p.D235Y | P29475 | protein_coding | deleterious_low_confidence(0) | possibly_damaging(0.855) | TCGA-AC-A23H-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
NOS1 | SNV | Missense_Mutation | | c.3001N>T | p.Arg1001Cys | p.R1001C | P29475 | protein_coding | tolerated(0.19) | benign(0.018) | TCGA-AN-A046-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
NOS1 | SNV | Missense_Mutation | rs150227193 | c.2312N>T | p.Ser771Leu | p.S771L | P29475 | protein_coding | deleterious(0) | probably_damaging(0.993) | TCGA-AN-A046-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
NOS1 | SNV | Missense_Mutation | | c.1244N>A | p.Arg415Gln | p.R415Q | P29475 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-AN-A0FY-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
NOS1 | SNV | Missense_Mutation | | c.228N>A | p.Ser76Arg | p.S76R | P29475 | protein_coding | deleterious_low_confidence(0) | possibly_damaging(0.724) | TCGA-B6-A0I6-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | PD |
NOS1 | SNV | Missense_Mutation | | c.1243N>T | p.Arg415Trp | p.R415W | P29475 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-BH-A0B3-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | cyclophosphamide | SD |
NOS1 | SNV | Missense_Mutation | novel | c.1474N>A | p.Gln492Lys | p.Q492K | P29475 | protein_coding | tolerated(0.1) | benign(0.432) | TCGA-BH-A0B6-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
NOS1 | SNV | Missense_Mutation | rs200664091 | c.2695N>A | p.Asp899Asn | p.D899N | P29475 | protein_coding | tolerated(0.72) | benign(0.003) | TCGA-E2-A14S-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Chemotherapy | cytoxan | SD |