Tissue | Expression Dynamics | Abbreviation |
Breast | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Breast/IFIT1_pca_on_diff_genes.png) | IDC: Invasive ductal carcinoma |
DCIS: Ductal carcinoma in situ |
Precancer(BRCA1-mut): Precancerous lesion from BRCA1 mutation carriers |
Esophagus | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Esophagus/IFIT1_pca_on_diff_genes.png) | ESCC: Esophageal squamous cell carcinoma |
HGIN: High-grade intraepithelial neoplasias |
LGIN: Low-grade intraepithelial neoplasias |
Liver | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Liver/IFIT1_pca_on_diff_genes.png) | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
Oral Cavity | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/OralCavity/IFIT1_pca_on_diff_genes.png) | EOLP: Erosive Oral lichen planus |
LP: leukoplakia |
NEOLP: Non-erosive oral lichen planus |
OSCC: Oral squamous cell carcinoma |
Skin | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Skin/IFIT1_pca_on_diff_genes.png) | AK: Actinic keratosis |
cSCC: Cutaneous squamous cell carcinoma |
SCCIS:squamous cell carcinoma in situ |
Thyroid | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Thyroid/IFIT1_pca_on_diff_genes.png) | ATC: Anaplastic thyroid cancer |
HT: Hashimoto's thyroiditis |
PTC: Papillary thyroid cancer |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:005109827 | Skin | cSCC | regulation of binding | 152/4864 | 363/18723 | 2.21e-11 | 1.10e-09 | 152 |
GO:000961522 | Skin | cSCC | response to virus | 152/4864 | 367/18723 | 5.88e-11 | 2.75e-09 | 152 |
GO:004440328 | Skin | cSCC | biological process involved in symbiotic interaction | 126/4864 | 290/18723 | 6.39e-11 | 2.97e-09 | 126 |
GO:0048524111 | Skin | cSCC | positive regulation of viral process | 40/4864 | 65/18723 | 1.60e-09 | 5.97e-08 | 40 |
GO:005170129 | Skin | cSCC | biological process involved in interaction with host | 91/4864 | 203/18723 | 4.30e-09 | 1.45e-07 | 91 |
GO:0050792112 | Skin | cSCC | regulation of viral process | 77/4864 | 164/18723 | 5.38e-09 | 1.78e-07 | 77 |
GO:0045069111 | Skin | cSCC | regulation of viral genome replication | 46/4864 | 85/18723 | 3.08e-08 | 8.30e-07 | 46 |
GO:003434014 | Skin | cSCC | response to type I interferon | 35/4864 | 58/18723 | 3.43e-08 | 9.08e-07 | 35 |
GO:007135713 | Skin | cSCC | cellular response to type I interferon | 32/4864 | 52/18723 | 6.87e-08 | 1.72e-06 | 32 |
GO:1903900112 | Skin | cSCC | regulation of viral life cycle | 68/4864 | 148/18723 | 1.17e-07 | 2.77e-06 | 68 |
GO:00516076 | Skin | cSCC | defense response to virus | 107/4864 | 265/18723 | 1.84e-07 | 4.02e-06 | 107 |
GO:01405466 | Skin | cSCC | defense response to symbiont | 107/4864 | 265/18723 | 1.84e-07 | 4.02e-06 | 107 |
GO:004507016 | Skin | cSCC | positive regulation of viral genome replication | 21/4864 | 30/18723 | 5.52e-07 | 1.06e-05 | 21 |
GO:004339325 | Skin | cSCC | regulation of protein binding | 79/4864 | 196/18723 | 7.59e-06 | 1.04e-04 | 79 |
GO:005110025 | Skin | cSCC | negative regulation of binding | 67/4864 | 162/18723 | 1.34e-05 | 1.68e-04 | 67 |
GO:003209117 | Skin | cSCC | negative regulation of protein binding | 43/4864 | 94/18723 | 2.68e-05 | 3.03e-04 | 43 |
GO:00450719 | Skin | cSCC | negative regulation of viral genome replication | 27/4864 | 56/18723 | 2.84e-04 | 2.27e-03 | 27 |
GO:000283122 | Skin | cSCC | regulation of response to biotic stimulus | 112/4864 | 327/18723 | 5.00e-04 | 3.76e-03 | 112 |
GO:007135911 | Skin | cSCC | cellular response to dsRNA | 13/4864 | 22/18723 | 1.03e-03 | 6.94e-03 | 13 |
GO:004852517 | Skin | cSCC | negative regulation of viral process | 37/4864 | 92/18723 | 1.94e-03 | 1.17e-02 | 37 |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
IFIT1 | SNV | Missense_Mutation | rs747305726 | c.970N>C | p.Ser324Pro | p.S324P | P09914 | protein_coding | tolerated(0.07) | benign(0.035) | TCGA-A8-A096-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
IFIT1 | SNV | Missense_Mutation | | c.1413G>C | p.Glu471Asp | p.E471D | P09914 | protein_coding | tolerated(0.07) | benign(0.006) | TCGA-AC-A23H-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
IFIT1 | SNV | Missense_Mutation | novel | c.897N>T | p.Met299Ile | p.M299I | P09914 | protein_coding | tolerated(0.21) | benign(0) | TCGA-AN-A046-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
IFIT1 | SNV | Missense_Mutation | | c.497N>T | p.Lys166Met | p.K166M | P09914 | protein_coding | deleterious(0.03) | probably_damaging(0.989) | TCGA-B6-A0WV-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
IFIT1 | SNV | Missense_Mutation | novel | c.1232N>T | p.Ala411Val | p.A411V | P09914 | protein_coding | tolerated(0.28) | benign(0) | TCGA-PE-A5DD-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | | CR |
IFIT1 | insertion | In_Frame_Ins | novel | c.152_153insAATTTTGTCAAATGCTTTTCCTGCATCAAT | p.Ser51delinsArgIleLeuSerAsnAlaPheProAlaSerIle | p.S51delinsRILSNAFPASI | P09914 | protein_coding | | | TCGA-A8-A09E-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Hormone Therapy | anastrozole | SD |
IFIT1 | insertion | Frame_Shift_Ins | novel | c.792_793insCATGACAACCAAGCAAATGTGAGGAGTCTGGTGACCTG | p.Gly265HisfsTer23 | p.G265Hfs*23 | P09914 | protein_coding | | | TCGA-AO-A0JB-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | cyclophosphamide | SD |
IFIT1 | deletion | In_Frame_Del | | c.462_464delNNN | p.Lys155del | p.K155del | P09914 | protein_coding | | | TCGA-C8-A1HJ-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
IFIT1 | deletion | Frame_Shift_Del | | c.822delN | p.Lys276ArgfsTer16 | p.K276Rfs*16 | P09914 | protein_coding | | | TCGA-D8-A1XQ-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
IFIT1 | SNV | Missense_Mutation | | c.404N>T | p.Arg135Ile | p.R135I | P09914 | protein_coding | deleterious(0) | benign(0.325) | TCGA-A6-6141-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Chemotherapy | 5-fu | SD |