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Gene: SRP54 |
Gene summary for SRP54 |
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Gene information | Species | Human | Gene symbol | SRP54 | Gene ID | 6729 |
Gene name | signal recognition particle 54 | |
Gene Alias | SCN8 | |
Cytomap | 14q13.2 | |
Gene Type | protein-coding | GO ID | GO:0002376 | UniProtAcc | P61011 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
6729 | SRP54 | LZE4T | Human | Esophagus | ESCC | 3.81e-18 | 5.13e-01 | 0.0811 |
6729 | SRP54 | LZE5T | Human | Esophagus | ESCC | 3.03e-11 | 9.01e-01 | 0.0514 |
6729 | SRP54 | LZE7T | Human | Esophagus | ESCC | 1.62e-06 | 4.90e-01 | 0.0667 |
6729 | SRP54 | LZE8T | Human | Esophagus | ESCC | 2.05e-08 | 1.84e-01 | 0.067 |
6729 | SRP54 | LZE20T | Human | Esophagus | ESCC | 7.11e-13 | 4.35e-01 | 0.0662 |
6729 | SRP54 | LZE22T | Human | Esophagus | ESCC | 9.04e-05 | 6.15e-01 | 0.068 |
6729 | SRP54 | LZE24T | Human | Esophagus | ESCC | 2.12e-25 | 4.51e-01 | 0.0596 |
6729 | SRP54 | LZE6T | Human | Esophagus | ESCC | 4.61e-07 | 5.25e-01 | 0.0845 |
6729 | SRP54 | P1T-E | Human | Esophagus | ESCC | 4.50e-07 | 7.73e-01 | 0.0875 |
6729 | SRP54 | P2T-E | Human | Esophagus | ESCC | 2.53e-38 | 5.17e-01 | 0.1177 |
6729 | SRP54 | P4T-E | Human | Esophagus | ESCC | 8.13e-35 | 7.87e-01 | 0.1323 |
6729 | SRP54 | P5T-E | Human | Esophagus | ESCC | 8.46e-30 | 5.29e-01 | 0.1327 |
6729 | SRP54 | P8T-E | Human | Esophagus | ESCC | 5.93e-78 | 1.38e+00 | 0.0889 |
6729 | SRP54 | P9T-E | Human | Esophagus | ESCC | 1.31e-13 | 3.12e-01 | 0.1131 |
6729 | SRP54 | P10T-E | Human | Esophagus | ESCC | 8.39e-37 | 7.03e-01 | 0.116 |
6729 | SRP54 | P11T-E | Human | Esophagus | ESCC | 3.11e-17 | 8.26e-01 | 0.1426 |
6729 | SRP54 | P12T-E | Human | Esophagus | ESCC | 1.15e-101 | 2.50e+00 | 0.1122 |
6729 | SRP54 | P15T-E | Human | Esophagus | ESCC | 1.20e-55 | 1.01e+00 | 0.1149 |
6729 | SRP54 | P16T-E | Human | Esophagus | ESCC | 3.58e-26 | 4.33e-01 | 0.1153 |
6729 | SRP54 | P17T-E | Human | Esophagus | ESCC | 1.09e-14 | 5.54e-01 | 0.1278 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:004504722 | Thyroid | ATC | protein targeting to ER | 28/6293 | 42/18723 | 1.21e-05 | 1.17e-04 | 28 |
GO:000661212 | Thyroid | ATC | protein targeting to membrane | 64/6293 | 131/18723 | 2.11e-04 | 1.39e-03 | 64 |
GO:007180631 | Thyroid | ATC | protein transmembrane transport | 32/6293 | 59/18723 | 8.74e-04 | 4.72e-03 | 32 |
GO:000661321 | Thyroid | ATC | cotranslational protein targeting to membrane | 19/6293 | 31/18723 | 1.45e-03 | 7.47e-03 | 19 |
GO:006500231 | Thyroid | ATC | intracellular protein transmembrane transport | 27/6293 | 51/18723 | 3.41e-03 | 1.52e-02 | 27 |
GO:00352722 | Thyroid | ATC | exocrine system development | 23/6293 | 45/18723 | 1.14e-02 | 4.06e-02 | 23 |
GO:0002573110 | Thyroid | ATC | myeloid leukocyte differentiation | 86/6293 | 208/18723 | 1.15e-02 | 4.11e-02 | 86 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa0306026 | Esophagus | ESCC | Protein export | 22/4205 | 23/8465 | 2.43e-06 | 1.43e-05 | 7.32e-06 | 22 |
hsa0306036 | Esophagus | ESCC | Protein export | 22/4205 | 23/8465 | 2.43e-06 | 1.43e-05 | 7.32e-06 | 22 |
hsa030608 | Liver | Cirrhotic | Protein export | 20/2530 | 23/8465 | 2.00e-08 | 3.51e-07 | 2.17e-07 | 20 |
hsa0306011 | Liver | Cirrhotic | Protein export | 20/2530 | 23/8465 | 2.00e-08 | 3.51e-07 | 2.17e-07 | 20 |
hsa0306021 | Liver | HCC | Protein export | 21/4020 | 23/8465 | 1.20e-05 | 8.53e-05 | 4.74e-05 | 21 |
hsa0306031 | Liver | HCC | Protein export | 21/4020 | 23/8465 | 1.20e-05 | 8.53e-05 | 4.74e-05 | 21 |
hsa0306018 | Oral cavity | OSCC | Protein export | 21/3704 | 23/8465 | 2.42e-06 | 1.27e-05 | 6.45e-06 | 21 |
hsa0306019 | Oral cavity | OSCC | Protein export | 21/3704 | 23/8465 | 2.42e-06 | 1.27e-05 | 6.45e-06 | 21 |
hsa0306025 | Oral cavity | LP | Protein export | 21/2418 | 23/8465 | 4.72e-10 | 8.28e-09 | 5.34e-09 | 21 |
hsa0306035 | Oral cavity | LP | Protein export | 21/2418 | 23/8465 | 4.72e-10 | 8.28e-09 | 5.34e-09 | 21 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
SRP54 | SNV | Missense_Mutation | c.1139N>C | p.Asp380Ala | p.D380A | P61011 | protein_coding | deleterious(0) | possibly_damaging(0.905) | TCGA-D8-A1JK-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
SRP54 | SNV | Missense_Mutation | c.1340C>T | p.Ser447Phe | p.S447F | P61011 | protein_coding | deleterious(0.02) | possibly_damaging(0.63) | TCGA-GM-A2D9-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | arimidex | SD | |
SRP54 | insertion | Frame_Shift_Ins | novel | c.1223_1224insGAAGAAATGCTTCAAGTTGCTAATGCTAT | p.Gly409LysfsTer10 | p.G409Kfs*10 | P61011 | protein_coding | TCGA-A8-A07U-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Chemotherapy | 5-fluorouracil | SD | ||
SRP54 | insertion | Nonsense_Mutation | novel | c.1024_1025insCAAGGCACATAAACTACACCTACTAGGATGAGTAAAAT | p.Met342ThrfsTer9 | p.M342Tfs*9 | P61011 | protein_coding | TCGA-AR-A0U0-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
SRP54 | SNV | Missense_Mutation | c.755G>T | p.Gly252Val | p.G252V | P61011 | protein_coding | deleterious(0) | probably_damaging(0.915) | TCGA-DS-A1OD-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | SD | |
SRP54 | SNV | Missense_Mutation | novel | c.1067N>T | p.Gly356Val | p.G356V | P61011 | protein_coding | deleterious(0.05) | possibly_damaging(0.822) | TCGA-VS-A9UM-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
SRP54 | SNV | Missense_Mutation | novel | c.508N>G | p.Ile170Val | p.I170V | P61011 | protein_coding | tolerated(0.4) | benign(0) | TCGA-VS-A9V5-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | carboplatin | PD |
SRP54 | SNV | Missense_Mutation | c.851C>A | p.Pro284His | p.P284H | P61011 | protein_coding | tolerated(0.09) | possibly_damaging(0.663) | TCGA-A6-5661-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
SRP54 | SNV | Missense_Mutation | novel | c.702N>T | p.Lys234Asn | p.K234N | P61011 | protein_coding | deleterious(0.04) | possibly_damaging(0.511) | TCGA-AA-A02R-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
SRP54 | SNV | Missense_Mutation | c.184N>T | p.Leu62Phe | p.L62F | P61011 | protein_coding | tolerated(0.58) | benign(0.003) | TCGA-CK-4951-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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