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Gene: HSPE1 |
Gene summary for HSPE1 |
Gene summary. |
Gene information | Species | Human | Gene symbol | HSPE1 | Gene ID | 3336 |
Gene name | heat shock protein family E (Hsp10) member 1 | |
Gene Alias | CPN10 | |
Cytomap | 2q33.1 | |
Gene Type | protein-coding | GO ID | GO:0001503 | UniProtAcc | P61604 |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
3336 | HSPE1 | GSM4909277 | Human | Breast | Precancer | 4.55e-13 | 8.38e-01 | 0.0177 |
3336 | HSPE1 | GSM4909280 | Human | Breast | Precancer | 8.21e-03 | 2.93e-01 | 0.0305 |
3336 | HSPE1 | GSM4909281 | Human | Breast | IDC | 1.03e-06 | 3.51e-01 | 0.21 |
3336 | HSPE1 | GSM4909285 | Human | Breast | IDC | 8.01e-19 | 4.79e-01 | 0.21 |
3336 | HSPE1 | GSM4909286 | Human | Breast | IDC | 6.96e-11 | -6.10e-02 | 0.1081 |
3336 | HSPE1 | GSM4909287 | Human | Breast | IDC | 1.00e-18 | 4.94e-01 | 0.2057 |
3336 | HSPE1 | GSM4909293 | Human | Breast | IDC | 3.46e-04 | 1.54e-01 | 0.1581 |
3336 | HSPE1 | GSM4909294 | Human | Breast | IDC | 1.67e-39 | 5.45e-01 | 0.2022 |
3336 | HSPE1 | GSM4909296 | Human | Breast | IDC | 1.96e-02 | 7.43e-02 | 0.1524 |
3336 | HSPE1 | GSM4909297 | Human | Breast | IDC | 1.50e-09 | -9.32e-02 | 0.1517 |
3336 | HSPE1 | GSM4909298 | Human | Breast | IDC | 5.00e-08 | -2.01e-01 | 0.1551 |
3336 | HSPE1 | GSM4909304 | Human | Breast | IDC | 6.28e-08 | 2.96e-01 | 0.1636 |
3336 | HSPE1 | GSM4909308 | Human | Breast | IDC | 6.36e-07 | 2.42e-01 | 0.158 |
3336 | HSPE1 | GSM4909311 | Human | Breast | IDC | 6.34e-31 | -5.82e-01 | 0.1534 |
3336 | HSPE1 | GSM4909312 | Human | Breast | IDC | 6.03e-06 | -2.64e-01 | 0.1552 |
3336 | HSPE1 | GSM4909313 | Human | Breast | IDC | 5.41e-09 | -5.14e-01 | 0.0391 |
3336 | HSPE1 | GSM4909315 | Human | Breast | IDC | 2.43e-05 | 2.88e-01 | 0.21 |
3336 | HSPE1 | GSM4909316 | Human | Breast | IDC | 3.25e-06 | 4.01e-01 | 0.21 |
3336 | HSPE1 | GSM4909319 | Human | Breast | IDC | 1.15e-43 | -3.08e-01 | 0.1563 |
3336 | HSPE1 | GSM4909320 | Human | Breast | IDC | 9.88e-05 | -2.88e-01 | 0.1575 |
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Transcriptomic changes along malignancy continuum. |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00432801 | Colorectum | SER | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 33/2897 | 129/18723 | 1.97e-03 | 1.97e-02 | 33 |
GO:20010561 | Colorectum | SER | positive regulation of cysteine-type endopeptidase activity | 36/2897 | 148/18723 | 3.21e-03 | 2.76e-02 | 36 |
GO:00510851 | Colorectum | SER | chaperone cofactor-dependent protein refolding | 12/2897 | 34/18723 | 3.60e-03 | 3.03e-02 | 12 |
GO:00510841 | Colorectum | SER | 'de novo' posttranslational protein folding | 13/2897 | 39/18723 | 4.39e-03 | 3.51e-02 | 13 |
GO:0006919 | Colorectum | SER | activation of cysteine-type endopeptidase activity involved in apoptotic process | 21/2897 | 78/18723 | 6.50e-03 | 4.66e-02 | 21 |
GO:00015031 | Colorectum | SER | ossification | 82/2897 | 408/18723 | 6.76e-03 | 4.78e-02 | 82 |
GO:00458622 | Colorectum | MSS | positive regulation of proteolysis | 119/3467 | 372/18723 | 2.14e-10 | 2.09e-08 | 119 |
GO:00064572 | Colorectum | MSS | protein folding | 71/3467 | 212/18723 | 1.25e-07 | 5.91e-06 | 71 |
GO:00525472 | Colorectum | MSS | regulation of peptidase activity | 130/3467 | 461/18723 | 1.81e-07 | 8.13e-06 | 130 |
GO:00109522 | Colorectum | MSS | positive regulation of peptidase activity | 63/3467 | 197/18723 | 3.65e-06 | 1.06e-04 | 63 |
GO:20001162 | Colorectum | MSS | regulation of cysteine-type endopeptidase activity | 72/3467 | 235/18723 | 4.39e-06 | 1.24e-04 | 72 |
GO:00359662 | Colorectum | MSS | response to topologically incorrect protein | 53/3467 | 159/18723 | 5.50e-06 | 1.49e-04 | 53 |
GO:00525482 | Colorectum | MSS | regulation of endopeptidase activity | 117/3467 | 432/18723 | 6.25e-06 | 1.65e-04 | 117 |
GO:00432812 | Colorectum | MSS | regulation of cysteine-type endopeptidase activity involved in apoptotic process | 65/3467 | 209/18723 | 7.29e-06 | 1.86e-04 | 65 |
GO:00064582 | Colorectum | MSS | 'de novo' protein folding | 20/3467 | 43/18723 | 2.50e-05 | 5.21e-04 | 20 |
GO:00510842 | Colorectum | MSS | 'de novo' posttranslational protein folding | 18/3467 | 39/18723 | 7.19e-05 | 1.21e-03 | 18 |
GO:00610772 | Colorectum | MSS | chaperone-mediated protein folding | 26/3467 | 67/18723 | 8.06e-05 | 1.33e-03 | 26 |
GO:00069862 | Colorectum | MSS | response to unfolded protein | 44/3467 | 137/18723 | 8.99e-05 | 1.43e-03 | 44 |
GO:00109502 | Colorectum | MSS | positive regulation of endopeptidase activity | 54/3467 | 179/18723 | 1.03e-04 | 1.61e-03 | 54 |
GO:00016492 | Colorectum | MSS | osteoblast differentiation | 64/3467 | 229/18723 | 2.91e-04 | 3.83e-03 | 64 |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
HSPE1 | SNV | Missense_Mutation | c.4N>A | p.Ala2Thr | p.A2T | P61604 | protein_coding | deleterious(0.05) | benign(0.027) | TCGA-DM-A1HB-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Unknown | Unknown | SD | |
HSPE1 | SNV | Missense_Mutation | c.175N>A | p.Glu59Lys | p.E59K | P61604 | protein_coding | tolerated(0.45) | benign(0.019) | TCGA-B5-A11E-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
HSPE1 | SNV | Missense_Mutation | novel | c.212N>C | p.Val71Ala | p.V71A | P61604 | protein_coding | deleterious(0) | possibly_damaging(0.741) | TCGA-DI-A1BU-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Chemotherapy | paclitaxel | SD |
HSPE1 | SNV | Missense_Mutation | novel | c.203N>C | p.Gly68Ala | p.G68A | P61604 | protein_coding | deleterious(0) | probably_damaging(0.936) | TCGA-P3-A5QF-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | cetuximab | PD |
HSPE1 | SNV | Missense_Mutation | novel | c.70G>A | p.Glu24Lys | p.E24K | P61604 | protein_coding | tolerated(0.28) | benign(0.053) | TCGA-T2-A6WZ-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | III/IV | Chemotherapy | cetuximab | PD |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
3336 | HSPE1 | NA | XToll |
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