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Gene: RARRES2 |
Gene summary for RARRES2 |
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Gene information | Species | Human | Gene symbol | RARRES2 | Gene ID | 5919 |
Gene name | retinoic acid receptor responder 2 | |
Gene Alias | HP10433 | |
Cytomap | 7q36.1 | |
Gene Type | protein-coding | GO ID | GO:0001523 | UniProtAcc | A0A090N7U9 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
5919 | RARRES2 | CA_HPV_1 | Human | Cervix | CC | 7.36e-13 | -4.02e-01 | 0.0264 |
5919 | RARRES2 | CA_HPV_2 | Human | Cervix | CC | 1.16e-09 | -4.05e-01 | 0.0391 |
5919 | RARRES2 | CA_HPV_3 | Human | Cervix | CC | 9.94e-04 | -3.26e-01 | 0.0414 |
5919 | RARRES2 | HSIL_HPV_1 | Human | Cervix | HSIL_HPV | 3.85e-03 | -3.20e-01 | 0.0116 |
5919 | RARRES2 | N_HPV_1 | Human | Cervix | N_HPV | 2.02e-03 | -2.99e-01 | 0.0079 |
5919 | RARRES2 | N_HPV_2 | Human | Cervix | N_HPV | 2.65e-03 | -2.57e-01 | -0.0131 |
5919 | RARRES2 | CCI_1 | Human | Cervix | CC | 6.10e-03 | -4.11e-01 | 0.528 |
5919 | RARRES2 | CCI_2 | Human | Cervix | CC | 1.57e-02 | -4.11e-01 | 0.5249 |
5919 | RARRES2 | CCI_3 | Human | Cervix | CC | 1.34e-04 | -4.11e-01 | 0.516 |
5919 | RARRES2 | CCII_1 | Human | Cervix | CC | 5.45e-05 | -3.99e-01 | 0.3249 |
5919 | RARRES2 | Tumor | Human | Cervix | CC | 7.36e-13 | -4.11e-01 | 0.1241 |
5919 | RARRES2 | sample3 | Human | Cervix | CC | 2.66e-15 | -4.11e-01 | 0.1387 |
5919 | RARRES2 | H2 | Human | Cervix | HSIL_HPV | 1.25e-05 | 3.47e-01 | 0.0632 |
5919 | RARRES2 | L1 | Human | Cervix | CC | 9.01e-04 | -3.42e-01 | 0.0802 |
5919 | RARRES2 | T1 | Human | Cervix | CC | 3.73e-02 | -2.69e-01 | 0.0918 |
5919 | RARRES2 | T2 | Human | Cervix | CC | 9.55e-05 | 6.99e-01 | 0.0709 |
5919 | RARRES2 | T3 | Human | Cervix | CC | 1.34e-14 | -4.11e-01 | 0.1389 |
5919 | RARRES2 | HTA11_866_2000001011 | Human | Colorectum | AD | 1.04e-02 | 6.82e-02 | -0.1001 |
5919 | RARRES2 | HTA11_2992_2000001011 | Human | Colorectum | SER | 9.15e-04 | 5.41e-01 | -0.1706 |
5919 | RARRES2 | AEH-subject1 | Human | Endometrium | AEH | 1.17e-46 | -8.04e-01 | -0.3059 |
Page: 1 2 3 4 5 6 7 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:004343416 | Endometrium | EEC | response to peptide hormone | 74/2168 | 414/18723 | 9.11e-05 | 1.28e-03 | 74 |
GO:005090013 | Endometrium | EEC | leukocyte migration | 67/2168 | 369/18723 | 1.19e-04 | 1.59e-03 | 67 |
GO:003166717 | Endometrium | EEC | response to nutrient levels | 82/2168 | 474/18723 | 1.23e-04 | 1.64e-03 | 82 |
GO:000268513 | Endometrium | EEC | regulation of leukocyte migration | 41/2168 | 210/18723 | 5.35e-04 | 5.38e-03 | 41 |
GO:009752913 | Endometrium | EEC | myeloid leukocyte migration | 42/2168 | 220/18723 | 7.42e-04 | 7.02e-03 | 42 |
GO:006032613 | Endometrium | EEC | cell chemotaxis | 55/2168 | 310/18723 | 8.22e-04 | 7.63e-03 | 55 |
GO:007137513 | Endometrium | EEC | cellular response to peptide hormone stimulus | 52/2168 | 290/18723 | 8.77e-04 | 8.01e-03 | 52 |
GO:003286914 | Endometrium | EEC | cellular response to insulin stimulus | 39/2168 | 203/18723 | 9.93e-04 | 8.79e-03 | 39 |
GO:003059513 | Endometrium | EEC | leukocyte chemotaxis | 43/2168 | 230/18723 | 1.01e-03 | 8.89e-03 | 43 |
GO:003210313 | Endometrium | EEC | positive regulation of response to external stimulus | 71/2168 | 427/18723 | 1.06e-03 | 9.18e-03 | 71 |
GO:000268813 | Endometrium | EEC | regulation of leukocyte chemotaxis | 26/2168 | 122/18723 | 1.45e-03 | 1.18e-02 | 26 |
GO:000828613 | Endometrium | EEC | insulin receptor signaling pathway | 25/2168 | 116/18723 | 1.50e-03 | 1.21e-02 | 25 |
GO:000268713 | Endometrium | EEC | positive regulation of leukocyte migration | 28/2168 | 135/18723 | 1.50e-03 | 1.21e-02 | 28 |
GO:007167513 | Endometrium | EEC | regulation of mononuclear cell migration | 24/2168 | 115/18723 | 2.89e-03 | 2.04e-02 | 24 |
GO:005092112 | Endometrium | EEC | positive regulation of chemotaxis | 28/2168 | 141/18723 | 2.94e-03 | 2.07e-02 | 28 |
GO:003286814 | Endometrium | EEC | response to insulin | 46/2168 | 264/18723 | 3.01e-03 | 2.10e-02 | 46 |
GO:00026907 | Endometrium | EEC | positive regulation of leukocyte chemotaxis | 20/2168 | 94/18723 | 4.94e-03 | 3.11e-02 | 20 |
GO:001921613 | Endometrium | EEC | regulation of lipid metabolic process | 54/2168 | 331/18723 | 5.82e-03 | 3.49e-02 | 54 |
GO:00716746 | Endometrium | EEC | mononuclear cell migration | 35/2168 | 196/18723 | 6.00e-03 | 3.57e-02 | 35 |
GO:00716219 | Endometrium | EEC | granulocyte chemotaxis | 24/2168 | 125/18723 | 8.60e-03 | 4.70e-02 | 24 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
RARRES2 | CMKLR1 | RARRES2_CMKLR1 | CHEMERIN | Breast | DCIS |
RARRES2 | CMKLR1 | RARRES2_CMKLR1 | CHEMERIN | Breast | IDC |
RARRES2 | CMKLR1 | RARRES2_CMKLR1 | CHEMERIN | Cervix | CC |
RARRES2 | CMKLR1 | RARRES2_CMKLR1 | CHEMERIN | CRC | AD |
RARRES2 | CMKLR1 | RARRES2_CMKLR1 | CHEMERIN | CRC | SER |
RARRES2 | GPR1 | RARRES2_GPR1 | CHEMERIN | Endometrium | ADJ |
RARRES2 | CMKLR1 | RARRES2_CMKLR1 | CHEMERIN | HNSCC | OSCC |
RARRES2 | CMKLR1 | RARRES2_CMKLR1 | CHEMERIN | Liver | Healthy |
RARRES2 | CMKLR1 | RARRES2_CMKLR1 | CHEMERIN | Lung | AAH |
RARRES2 | CMKLR1 | RARRES2_CMKLR1 | CHEMERIN | THCA | ADJ |
RARRES2 | CMKLR1 | RARRES2_CMKLR1 | CHEMERIN | THCA | Cancer |
RARRES2 | CMKLR1 | RARRES2_CMKLR1 | CHEMERIN | THCA | Precancer |
RARRES2 | CMKLR1 | RARRES2_CMKLR1 | CHEMERIN | THCA | PTC |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
RARRES2 | SNV | Missense_Mutation | c.249N>T | p.Lys83Asn | p.K83N | Q99969 | protein_coding | deleterious(0.01) | possibly_damaging(0.801) | TCGA-AP-A059-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
RARRES2 | SNV | Missense_Mutation | novel | c.25N>A | p.Ala9Thr | p.A9T | Q99969 | protein_coding | deleterious_low_confidence(0) | benign(0.137) | TCGA-EO-A22U-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
RARRES2 | SNV | Missense_Mutation | novel | c.292T>G | p.Cys98Gly | p.C98G | Q99969 | protein_coding | deleterious(0.01) | probably_damaging(0.996) | TCGA-CR-6482-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | paclitaxel | SD |
RARRES2 | SNV | Missense_Mutation | novel | c.286N>G | p.Arg96Gly | p.R96G | Q99969 | protein_coding | deleterious(0.02) | probably_damaging(0.997) | TCGA-CR-7371-01 | Oral cavity | head & neck squamous cell carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
RARRES2 | SNV | Missense_Mutation | rs772969637 | c.337N>T | p.Arg113Trp | p.R113W | Q99969 | protein_coding | tolerated(0.13) | benign(0.005) | TCGA-CD-8527-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Chemotherapy | epirubicin | PD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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