Tissue | Expression Dynamics | Abbreviation |
Esophagus | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Esophagus/RELB_pca_on_diff_genes.png) | ESCC: Esophageal squamous cell carcinoma |
HGIN: High-grade intraepithelial neoplasias |
LGIN: Low-grade intraepithelial neoplasias |
Liver | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Liver/RELB_pca_on_diff_genes.png) | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
Lung | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Lung/RELB_pca_on_diff_genes.png) | AAH: Atypical adenomatous hyperplasia |
AIS: Adenocarcinoma in situ |
IAC: Invasive lung adenocarcinoma |
MIA: Minimally invasive adenocarcinoma |
Oral Cavity | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/OralCavity/RELB_pca_on_diff_genes.png) | EOLP: Erosive Oral lichen planus |
LP: leukoplakia |
NEOLP: Non-erosive oral lichen planus |
OSCC: Oral squamous cell carcinoma |
Thyroid | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Thyroid/RELB_pca_on_diff_genes.png) | ATC: Anaplastic thyroid cancer |
HT: Hashimoto's thyroiditis |
PTC: Papillary thyroid cancer |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:003247911 | Oral cavity | EOLP | regulation of type I interferon production | 27/2218 | 95/18723 | 9.68e-06 | 1.75e-04 | 27 |
GO:003260611 | Oral cavity | EOLP | type I interferon production | 27/2218 | 95/18723 | 9.68e-06 | 1.75e-04 | 27 |
GO:00326081 | Oral cavity | EOLP | interferon-beta production | 19/2218 | 56/18723 | 1.27e-05 | 2.15e-04 | 19 |
GO:00326481 | Oral cavity | EOLP | regulation of interferon-beta production | 19/2218 | 56/18723 | 1.27e-05 | 2.15e-04 | 19 |
GO:0043367 | Oral cavity | EOLP | CD4-positive, alpha-beta T cell differentiation | 24/2218 | 83/18723 | 2.17e-05 | 3.35e-04 | 24 |
GO:00022633 | Oral cavity | EOLP | cell activation involved in immune response | 56/2218 | 279/18723 | 4.91e-05 | 6.47e-04 | 56 |
GO:000762317 | Oral cavity | EOLP | circadian rhythm | 45/2218 | 210/18723 | 5.24e-05 | 6.79e-04 | 45 |
GO:00023662 | Oral cavity | EOLP | leukocyte activation involved in immune response | 55/2218 | 275/18723 | 6.32e-05 | 7.90e-04 | 55 |
GO:00022852 | Oral cavity | EOLP | lymphocyte activation involved in immune response | 42/2218 | 194/18723 | 7.17e-05 | 8.82e-04 | 42 |
GO:003292221 | Oral cavity | EOLP | circadian regulation of gene expression | 20/2218 | 68/18723 | 7.88e-05 | 9.51e-04 | 20 |
GO:006219726 | Oral cavity | EOLP | cellular response to chemical stress | 64/2218 | 337/18723 | 8.49e-05 | 1.01e-03 | 64 |
GO:003806121 | Oral cavity | EOLP | NIK/NF-kappaB signaling | 32/2218 | 143/18723 | 2.64e-04 | 2.56e-03 | 32 |
GO:0042093 | Oral cavity | EOLP | T-helper cell differentiation | 18/2218 | 66/18723 | 4.94e-04 | 4.31e-03 | 18 |
GO:00022864 | Oral cavity | EOLP | T cell activation involved in immune response | 26/2218 | 114/18723 | 7.06e-04 | 5.78e-03 | 26 |
GO:0002294 | Oral cavity | EOLP | CD4-positive, alpha-beta T cell differentiation involved in immune response | 18/2218 | 68/18723 | 7.29e-04 | 5.94e-03 | 18 |
GO:0002287 | Oral cavity | EOLP | alpha-beta T cell activation involved in immune response | 18/2218 | 69/18723 | 8.79e-04 | 6.75e-03 | 18 |
GO:0002293 | Oral cavity | EOLP | alpha-beta T cell differentiation involved in immune response | 18/2218 | 69/18723 | 8.79e-04 | 6.75e-03 | 18 |
GO:0002292 | Oral cavity | EOLP | T cell differentiation involved in immune response | 19/2218 | 75/18723 | 9.43e-04 | 7.15e-03 | 19 |
GO:0045063 | Oral cavity | EOLP | T-helper 1 cell differentiation | 7/2218 | 20/18723 | 6.20e-03 | 3.09e-02 | 7 |
GO:0032480 | Oral cavity | EOLP | negative regulation of type I interferon production | 9/2218 | 30/18723 | 6.33e-03 | 3.13e-02 | 9 |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa05166211 | Esophagus | ESCC | Human T-cell leukemia virus 1 infection | 164/4205 | 222/8465 | 8.13e-14 | 2.09e-12 | 1.07e-12 | 164 |
hsa05169210 | Esophagus | ESCC | Epstein-Barr virus infection | 151/4205 | 202/8465 | 1.55e-13 | 3.45e-12 | 1.77e-12 | 151 |
hsa046259 | Esophagus | ESCC | C-type lectin receptor signaling pathway | 73/4205 | 104/8465 | 1.57e-05 | 7.98e-05 | 4.09e-05 | 73 |
hsa040645 | Esophagus | ESCC | NF-kappa B signaling pathway | 67/4205 | 104/8465 | 1.62e-03 | 4.89e-03 | 2.50e-03 | 67 |
hsa05166310 | Esophagus | ESCC | Human T-cell leukemia virus 1 infection | 164/4205 | 222/8465 | 8.13e-14 | 2.09e-12 | 1.07e-12 | 164 |
hsa0516937 | Esophagus | ESCC | Epstein-Barr virus infection | 151/4205 | 202/8465 | 1.55e-13 | 3.45e-12 | 1.77e-12 | 151 |
hsa0462513 | Esophagus | ESCC | C-type lectin receptor signaling pathway | 73/4205 | 104/8465 | 1.57e-05 | 7.98e-05 | 4.09e-05 | 73 |
hsa0406412 | Esophagus | ESCC | NF-kappa B signaling pathway | 67/4205 | 104/8465 | 1.62e-03 | 4.89e-03 | 2.50e-03 | 67 |
hsa0516614 | Liver | Cirrhotic | Human T-cell leukemia virus 1 infection | 87/2530 | 222/8465 | 1.69e-03 | 8.01e-03 | 4.94e-03 | 87 |
hsa0516914 | Liver | Cirrhotic | Epstein-Barr virus infection | 80/2530 | 202/8465 | 1.80e-03 | 8.33e-03 | 5.13e-03 | 80 |
hsa0516615 | Liver | Cirrhotic | Human T-cell leukemia virus 1 infection | 87/2530 | 222/8465 | 1.69e-03 | 8.01e-03 | 4.94e-03 | 87 |
hsa0516915 | Liver | Cirrhotic | Epstein-Barr virus infection | 80/2530 | 202/8465 | 1.80e-03 | 8.33e-03 | 5.13e-03 | 80 |
hsa0516921 | Liver | HCC | Epstein-Barr virus infection | 128/4020 | 202/8465 | 3.17e-06 | 2.79e-05 | 1.55e-05 | 128 |
hsa0516622 | Liver | HCC | Human T-cell leukemia virus 1 infection | 139/4020 | 222/8465 | 3.17e-06 | 2.79e-05 | 1.55e-05 | 139 |
hsa0516931 | Liver | HCC | Epstein-Barr virus infection | 128/4020 | 202/8465 | 3.17e-06 | 2.79e-05 | 1.55e-05 | 128 |
hsa0516632 | Liver | HCC | Human T-cell leukemia virus 1 infection | 139/4020 | 222/8465 | 3.17e-06 | 2.79e-05 | 1.55e-05 | 139 |
hsa0516616 | Lung | IAC | Human T-cell leukemia virus 1 infection | 49/1053 | 222/8465 | 3.44e-05 | 6.38e-04 | 4.24e-04 | 49 |
hsa040108 | Lung | IAC | MAPK signaling pathway | 62/1053 | 302/8465 | 3.54e-05 | 6.38e-04 | 4.24e-04 | 62 |
hsa04625 | Lung | IAC | C-type lectin receptor signaling pathway | 26/1053 | 104/8465 | 3.15e-04 | 3.11e-03 | 2.06e-03 | 26 |
hsa0516916 | Lung | IAC | Epstein-Barr virus infection | 40/1053 | 202/8465 | 1.72e-03 | 9.66e-03 | 6.41e-03 | 40 |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
RELB | SNV | Missense_Mutation | | c.866N>T | p.Ser289Phe | p.S289F | Q01201 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-EW-A1J5-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | adriamycin | SD |
RELB | insertion | In_Frame_Ins | novel | c.1660_1661insCAAGAGCACGTCATT | p.Gly554delinsAlaArgAlaArgHisCys | p.G554delinsARARHC | Q01201 | protein_coding | | | TCGA-BH-A0AY-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | | SD |
RELB | SNV | Missense_Mutation | novel | c.561N>T | p.Lys187Asn | p.K187N | Q01201 | protein_coding | tolerated(0.05) | probably_damaging(0.996) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
RELB | SNV | Missense_Mutation | rs372431384 | c.638N>A | p.Arg213Gln | p.R213Q | Q01201 | protein_coding | tolerated(0.22) | benign(0.093) | TCGA-C5-A1MH-01 | Cervix | cervical & endocervical cancer | Female | >=65 | III/IV | Chemotherapy | cisplatin | PD |
RELB | SNV | Missense_Mutation | novel | c.122N>G | p.Ser41Cys | p.S41C | Q01201 | protein_coding | deleterious_low_confidence(0) | benign(0.237) | TCGA-MY-A5BD-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
RELB | SNV | Missense_Mutation | | c.1459G>A | p.Asp487Asn | p.D487N | Q01201 | protein_coding | deleterious_low_confidence(0.05) | benign(0) | TCGA-AA-3864-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
RELB | SNV | Missense_Mutation | novel | c.920N>A | p.Arg307Gln | p.R307Q | Q01201 | protein_coding | deleterious(0.01) | possibly_damaging(0.796) | TCGA-AA-3950-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
RELB | SNV | Missense_Mutation | rs747326911 | c.823N>T | p.Arg275Trp | p.R275W | Q01201 | protein_coding | deleterious(0.02) | probably_damaging(0.979) | TCGA-AZ-6598-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
RELB | SNV | Missense_Mutation | rs376021184 | c.199N>A | p.Gly67Ser | p.G67S | Q01201 | protein_coding | deleterious_low_confidence(0.01) | benign(0.04) | TCGA-NH-A5IV-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
RELB | SNV | Missense_Mutation | novel | c.715N>G | p.Ile239Val | p.I239V | Q01201 | protein_coding | tolerated(0.09) | benign(0.081) | TCGA-A5-A1OF-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |