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Gene: TG |
Gene summary for TG |
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Gene information | Species | Human | Gene symbol | TG | Gene ID | 7038 |
Gene name | thyroglobulin | |
Gene Alias | AITD3 | |
Cytomap | 8q24.22 | |
Gene Type | protein-coding | GO ID | GO:0006575 | UniProtAcc | P01266 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
7038 | TG | Adj_PTCwithHT_6 | Human | Thyroid | HT | 7.30e-105 | -2.11e+00 | 0.02 |
7038 | TG | Adj_PTCwithHT_8 | Human | Thyroid | HT | 6.03e-06 | -2.18e-01 | 0.0267 |
7038 | TG | PTCwithHT_1 | Human | Thyroid | HT | 1.56e-31 | -1.52e+00 | 0.0238 |
7038 | TG | PTCwithHT_6 | Human | Thyroid | HT | 1.38e-104 | -2.12e+00 | 0.02 |
7038 | TG | PTCwithHT_8 | Human | Thyroid | HT | 2.54e-58 | -1.07e+00 | 0.0351 |
7038 | TG | PTCwithoutHT_2 | Human | Thyroid | PTC | 3.80e-11 | -3.56e-01 | 0.0419 |
7038 | TG | PTCwithoutHT_7 | Human | Thyroid | PTC | 4.95e-19 | -8.43e-01 | 0.0381 |
7038 | TG | male-WTA | Human | Thyroid | PTC | 1.56e-05 | 1.85e-01 | 0.1037 |
7038 | TG | nodule-WTA | Human | Thyroid | goiters | 1.11e-15 | 2.90e-01 | 0.0534 |
7038 | TG | PTC01 | Human | Thyroid | PTC | 1.01e-25 | 2.49e+00 | 0.1899 |
7038 | TG | PTC03 | Human | Thyroid | PTC | 2.57e-11 | 1.84e+00 | 0.1784 |
7038 | TG | PTC04 | Human | Thyroid | PTC | 7.44e-08 | 1.70e+00 | 0.1927 |
7038 | TG | PTC05 | Human | Thyroid | PTC | 7.32e-32 | 2.88e+00 | 0.2065 |
7038 | TG | PTC06 | Human | Thyroid | PTC | 8.06e-54 | 4.16e+00 | 0.2057 |
7038 | TG | PTC07 | Human | Thyroid | PTC | 5.54e-48 | 2.79e+00 | 0.2044 |
7038 | TG | ATC08 | Human | Thyroid | ATC | 1.04e-55 | -1.49e+00 | 0.0541 |
7038 | TG | ATC09 | Human | Thyroid | ATC | 2.30e-54 | -2.31e+00 | 0.2871 |
7038 | TG | ATC11 | Human | Thyroid | ATC | 5.27e-20 | -2.31e+00 | 0.3386 |
7038 | TG | ATC12 | Human | Thyroid | ATC | 2.29e-129 | -2.31e+00 | 0.34 |
7038 | TG | ATC13 | Human | Thyroid | ATC | 7.68e-130 | -2.30e+00 | 0.34 |
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Tissue | Expression Dynamics | Abbreviation |
Thyroid | ![]() | ATC: Anaplastic thyroid cancer |
HT: Hashimoto's thyroiditis | ||
PTC: Papillary thyroid cancer |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:190290311 | Stomach | CAG with IM | regulation of supramolecular fiber organization | 51/1050 | 383/18723 | 8.25e-09 | 7.45e-07 | 51 |
GO:001905811 | Stomach | CAG with IM | viral life cycle | 45/1050 | 317/18723 | 8.82e-09 | 7.70e-07 | 45 |
GO:006107711 | Stomach | CAG with IM | chaperone-mediated protein folding | 18/1050 | 67/18723 | 1.78e-08 | 1.46e-06 | 18 |
GO:011005311 | Stomach | CAG with IM | regulation of actin filament organization | 40/1050 | 278/18723 | 4.04e-08 | 3.21e-06 | 40 |
GO:003295611 | Stomach | CAG with IM | regulation of actin cytoskeleton organization | 47/1050 | 358/18723 | 4.93e-08 | 3.70e-06 | 47 |
GO:006157211 | Stomach | CAG with IM | actin filament bundle organization | 28/1050 | 161/18723 | 8.23e-08 | 5.77e-06 | 28 |
GO:00335591 | Stomach | CAG with IM | unsaturated fatty acid metabolic process | 23/1050 | 116/18723 | 1.00e-07 | 6.93e-06 | 23 |
GO:005108411 | Stomach | CAG with IM | 'de novo' posttranslational protein folding | 13/1050 | 39/18723 | 1.04e-07 | 7.14e-06 | 13 |
GO:005108511 | Stomach | CAG with IM | chaperone cofactor-dependent protein refolding | 12/1050 | 34/18723 | 1.58e-07 | 1.07e-05 | 12 |
GO:005101711 | Stomach | CAG with IM | actin filament bundle assembly | 27/1050 | 157/18723 | 1.77e-07 | 1.16e-05 | 27 |
GO:004521611 | Stomach | CAG with IM | cell-cell junction organization | 30/1050 | 200/18723 | 8.07e-07 | 4.05e-05 | 30 |
GO:004206011 | Stomach | CAG with IM | wound healing | 49/1050 | 422/18723 | 1.11e-06 | 5.44e-05 | 49 |
GO:00066901 | Stomach | CAG with IM | icosanoid metabolic process | 22/1050 | 123/18723 | 1.21e-06 | 5.85e-05 | 22 |
GO:000663111 | Stomach | CAG with IM | fatty acid metabolic process | 46/1050 | 390/18723 | 1.53e-06 | 7.14e-05 | 46 |
GO:003164711 | Stomach | CAG with IM | regulation of protein stability | 38/1050 | 298/18723 | 1.92e-06 | 8.60e-05 | 38 |
GO:00066921 | Stomach | CAG with IM | prostanoid metabolic process | 13/1050 | 49/18723 | 2.00e-06 | 8.81e-05 | 13 |
GO:00066931 | Stomach | CAG with IM | prostaglandin metabolic process | 13/1050 | 49/18723 | 2.00e-06 | 8.81e-05 | 13 |
GO:005082111 | Stomach | CAG with IM | protein stabilization | 28/1050 | 191/18723 | 2.95e-06 | 1.21e-04 | 28 |
GO:00018951 | Stomach | CAG with IM | retina homeostasis | 16/1050 | 79/18723 | 6.51e-06 | 2.39e-04 | 16 |
GO:004440311 | Stomach | CAG with IM | biological process involved in symbiotic interaction | 36/1050 | 290/18723 | 6.58e-06 | 2.40e-04 | 36 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
COL1A1 | ITGA1_ITGB1 | COL1A1_ITGA1_ITGB1 | COLLAGEN | Breast | ADJ |
COL1A2 | ITGA1_ITGB1 | COL1A2_ITGA1_ITGB1 | COLLAGEN | Breast | ADJ |
COL4A1 | ITGA1_ITGB1 | COL4A1_ITGA1_ITGB1 | COLLAGEN | Breast | ADJ |
COL4A2 | ITGA1_ITGB1 | COL4A2_ITGA1_ITGB1 | COLLAGEN | Breast | ADJ |
COL6A1 | ITGA1_ITGB1 | COL6A1_ITGA1_ITGB1 | COLLAGEN | Breast | ADJ |
COL6A2 | ITGA1_ITGB1 | COL6A2_ITGA1_ITGB1 | COLLAGEN | Breast | ADJ |
COL6A3 | ITGA1_ITGB1 | COL6A3_ITGA1_ITGB1 | COLLAGEN | Breast | ADJ |
COL1A1 | ITGA2_ITGB1 | COL1A1_ITGA2_ITGB1 | COLLAGEN | Breast | ADJ |
COL1A2 | ITGA2_ITGB1 | COL1A2_ITGA2_ITGB1 | COLLAGEN | Breast | ADJ |
COL4A1 | ITGA2_ITGB1 | COL4A1_ITGA2_ITGB1 | COLLAGEN | Breast | ADJ |
COL4A2 | ITGA2_ITGB1 | COL4A2_ITGA2_ITGB1 | COLLAGEN | Breast | ADJ |
COL6A1 | ITGA2_ITGB1 | COL6A1_ITGA2_ITGB1 | COLLAGEN | Breast | ADJ |
COL6A2 | ITGA2_ITGB1 | COL6A2_ITGA2_ITGB1 | COLLAGEN | Breast | ADJ |
COL6A3 | ITGA2_ITGB1 | COL6A3_ITGA2_ITGB1 | COLLAGEN | Breast | ADJ |
LAMA2 | ITGA1_ITGB1 | LAMA2_ITGA1_ITGB1 | LAMININ | Breast | ADJ |
LAMA4 | ITGA1_ITGB1 | LAMA4_ITGA1_ITGB1 | LAMININ | Breast | ADJ |
LAMB2 | ITGA1_ITGB1 | LAMB2_ITGA1_ITGB1 | LAMININ | Breast | ADJ |
LAMB3 | ITGA1_ITGB1 | LAMB3_ITGA1_ITGB1 | LAMININ | Breast | ADJ |
LAMC1 | ITGA1_ITGB1 | LAMC1_ITGA1_ITGB1 | LAMININ | Breast | ADJ |
LAMC2 | ITGA1_ITGB1 | LAMC2_ITGA1_ITGB1 | LAMININ | Breast | ADJ |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
TG | SNV | Missense_Mutation | rs201480815 | c.3416N>T | p.Ser1139Leu | p.S1139L | P01266 | protein_coding | tolerated(0.14) | benign(0) | TCGA-A1-A0SK-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | PD |
TG | SNV | Missense_Mutation | c.4662G>T | p.Trp1554Cys | p.W1554C | P01266 | protein_coding | deleterious(0.01) | benign(0.123) | TCGA-A1-A0SP-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | SD | ||
TG | SNV | Missense_Mutation | c.4882N>T | p.Asp1628Tyr | p.D1628Y | P01266 | protein_coding | deleterious(0) | possibly_damaging(0.861) | TCGA-A2-A04W-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | cytoxan | SD | |
TG | SNV | Missense_Mutation | c.3133N>A | p.Gly1045Arg | p.G1045R | P01266 | protein_coding | tolerated(0.13) | benign(0.007) | TCGA-A2-A25B-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | taxotere | PD | |
TG | SNV | Missense_Mutation | c.5223N>C | p.Gln1741His | p.Q1741H | P01266 | protein_coding | deleterious(0.02) | probably_damaging(0.994) | TCGA-A2-A25B-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | taxotere | PD | |
TG | SNV | Missense_Mutation | rs773795717 | c.4645C>T | p.Arg1549Trp | p.R1549W | P01266 | protein_coding | deleterious(0.05) | benign(0.232) | TCGA-A7-A13E-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Targeted Molecular therapy | bevacizumab | PD |
TG | SNV | Missense_Mutation | novel | c.1093N>A | p.Ala365Thr | p.A365T | P01266 | protein_coding | tolerated(0.44) | benign(0) | TCGA-A7-A26I-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Chemotherapy | cytoxan | SD |
TG | SNV | Missense_Mutation | rs146594373 | c.4268N>A | p.Arg1423His | p.R1423H | P01266 | protein_coding | tolerated(0.55) | benign(0.001) | TCGA-A8-A06O-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | letrozole | SD |
TG | SNV | Missense_Mutation | c.746G>A | p.Gly249Asp | p.G249D | P01266 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-A8-A07L-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | CR | ||
TG | SNV | Missense_Mutation | c.3746N>T | p.Cys1249Phe | p.C1249F | P01266 | protein_coding | deleterious(0) | probably_damaging(0.998) | TCGA-A8-A08F-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | 5-fluorouracil | CR |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
7038 | TG | DRUGGABLE GENOME, HORMONE ACTIVITY | RETINOIDS | 12182039 | ||
7038 | TG | DRUGGABLE GENOME, HORMONE ACTIVITY | FDG | FLUDEOXYGLUCOSE-F18 | 10452315 | |
7038 | TG | DRUGGABLE GENOME, HORMONE ACTIVITY | BISPECIFIC ANTIBODY | 10433080 | ||
7038 | TG | DRUGGABLE GENOME, HORMONE ACTIVITY | PHENYTOIN | PHENYTOIN | 3935423 | |
7038 | TG | DRUGGABLE GENOME, HORMONE ACTIVITY | PREDNISONE | PREDNISONE | 2745931 | |
7038 | TG | DRUGGABLE GENOME, HORMONE ACTIVITY | ALL-TRANS-RETINOIC ACID | 10946899 | ||
7038 | TG | DRUGGABLE GENOME, HORMONE ACTIVITY | TGFBETA1 | 10770487,10194419 | ||
7038 | TG | DRUGGABLE GENOME, HORMONE ACTIVITY | RETINOIC ACID | 11563543 | ||
7038 | TG | DRUGGABLE GENOME, HORMONE ACTIVITY | PREDNISOLONE | PREDNISOLONE | 3427792,8636270 | |
7038 | TG | DRUGGABLE GENOME, HORMONE ACTIVITY | AMIODARONE | AMIODARONE | 8778159 |
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