Tissue | Expression Dynamics | Abbreviation |
Esophagus | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Esophagus/TBK1_pca_on_diff_genes.png) | ESCC: Esophageal squamous cell carcinoma |
HGIN: High-grade intraepithelial neoplasias |
LGIN: Low-grade intraepithelial neoplasias |
Lung | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Lung/TBK1_pca_on_diff_genes.png) | AAH: Atypical adenomatous hyperplasia |
AIS: Adenocarcinoma in situ |
IAC: Invasive lung adenocarcinoma |
MIA: Minimally invasive adenocarcinoma |
Oral Cavity | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/OralCavity/TBK1_pca_on_diff_genes.png) | EOLP: Erosive Oral lichen planus |
LP: leukoplakia |
NEOLP: Non-erosive oral lichen planus |
OSCC: Oral squamous cell carcinoma |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00019594 | Oral cavity | OSCC | regulation of cytokine-mediated signaling pathway | 87/7305 | 150/18723 | 1.82e-06 | 2.35e-05 | 87 |
GO:00603384 | Oral cavity | OSCC | regulation of type I interferon-mediated signaling pathway | 28/7305 | 36/18723 | 2.45e-06 | 3.08e-05 | 28 |
GO:00607594 | Oral cavity | OSCC | regulation of response to cytokine stimulus | 92/7305 | 162/18723 | 3.25e-06 | 3.90e-05 | 92 |
GO:00450884 | Oral cavity | OSCC | regulation of innate immune response | 116/7305 | 218/18723 | 1.36e-05 | 1.37e-04 | 116 |
GO:00619127 | Oral cavity | OSCC | selective autophagy | 44/7305 | 68/18723 | 1.57e-05 | 1.57e-04 | 44 |
GO:00326083 | Oral cavity | OSCC | interferon-beta production | 37/7305 | 56/18723 | 3.74e-05 | 3.32e-04 | 37 |
GO:00326483 | Oral cavity | OSCC | regulation of interferon-beta production | 37/7305 | 56/18723 | 3.74e-05 | 3.32e-04 | 37 |
GO:00324816 | Oral cavity | OSCC | positive regulation of type I interferon production | 38/7305 | 58/18723 | 3.91e-05 | 3.43e-04 | 38 |
GO:00162393 | Oral cavity | OSCC | positive regulation of macroautophagy | 40/7305 | 63/18723 | 7.19e-05 | 5.67e-04 | 40 |
GO:00327283 | Oral cavity | OSCC | positive regulation of interferon-beta production | 27/7305 | 39/18723 | 1.27e-04 | 9.09e-04 | 27 |
GO:00321037 | Oral cavity | OSCC | positive regulation of response to external stimulus | 203/7305 | 427/18723 | 1.79e-04 | 1.22e-03 | 203 |
GO:00607604 | Oral cavity | OSCC | positive regulation of response to cytokine stimulus | 36/7305 | 57/18723 | 1.91e-04 | 1.28e-03 | 36 |
GO:00192214 | Oral cavity | OSCC | cytokine-mediated signaling pathway | 222/7305 | 472/18723 | 2.02e-04 | 1.35e-03 | 222 |
GO:00019614 | Oral cavity | OSCC | positive regulation of cytokine-mediated signaling pathway | 32/7305 | 50/18723 | 3.02e-04 | 1.89e-03 | 32 |
GO:00324793 | Oral cavity | OSCC | regulation of type I interferon production | 54/7305 | 95/18723 | 3.17e-04 | 1.97e-03 | 54 |
GO:00326063 | Oral cavity | OSCC | type I interferon production | 54/7305 | 95/18723 | 3.17e-04 | 1.97e-03 | 54 |
GO:000181910 | Oral cavity | OSCC | positive regulation of cytokine production | 213/7305 | 467/18723 | 1.93e-03 | 8.96e-03 | 213 |
GO:00022184 | Oral cavity | OSCC | activation of innate immune response | 31/7305 | 52/18723 | 2.08e-03 | 9.59e-03 | 31 |
GO:00181079 | Oral cavity | OSCC | peptidyl-threonine phosphorylation | 60/7305 | 116/18723 | 3.59e-03 | 1.50e-02 | 60 |
GO:00182109 | Oral cavity | OSCC | peptidyl-threonine modification | 64/7305 | 125/18723 | 3.68e-03 | 1.52e-02 | 64 |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa05014210 | Esophagus | ESCC | Amyotrophic lateral sclerosis | 266/4205 | 364/8465 | 1.31e-20 | 2.20e-18 | 1.13e-18 | 266 |
hsa05022210 | Esophagus | ESCC | Pathways of neurodegeneration - multiple diseases | 318/4205 | 476/8465 | 6.10e-15 | 2.04e-13 | 1.05e-13 | 318 |
hsa05169210 | Esophagus | ESCC | Epstein-Barr virus infection | 151/4205 | 202/8465 | 1.55e-13 | 3.45e-12 | 1.77e-12 | 151 |
hsa05131211 | Esophagus | ESCC | Shigellosis | 176/4205 | 247/8465 | 2.27e-12 | 4.01e-11 | 2.05e-11 | 176 |
hsa05170210 | Esophagus | ESCC | Human immunodeficiency virus 1 infection | 147/4205 | 212/8465 | 3.37e-09 | 3.53e-08 | 1.81e-08 | 147 |
hsa05167211 | Esophagus | ESCC | Kaposi sarcoma-associated herpesvirus infection | 136/4205 | 194/8465 | 4.28e-09 | 4.22e-08 | 2.16e-08 | 136 |
hsa0516425 | Esophagus | ESCC | Influenza A | 122/4205 | 171/8465 | 5.01e-09 | 4.79e-08 | 2.45e-08 | 122 |
hsa0516510 | Esophagus | ESCC | Human papillomavirus infection | 215/4205 | 331/8465 | 7.86e-09 | 7.12e-08 | 3.65e-08 | 215 |
hsa0513526 | Esophagus | ESCC | Yersinia infection | 100/4205 | 137/8465 | 1.80e-08 | 1.59e-07 | 8.12e-08 | 100 |
hsa05171211 | Esophagus | ESCC | Coronavirus disease - COVID-19 | 156/4205 | 232/8465 | 3.18e-08 | 2.68e-07 | 1.37e-07 | 156 |
hsa0414010 | Esophagus | ESCC | Autophagy - animal | 101/4205 | 141/8465 | 7.60e-08 | 6.21e-07 | 3.18e-07 | 101 |
hsa05417211 | Esophagus | ESCC | Lipid and atherosclerosis | 143/4205 | 215/8465 | 3.30e-07 | 2.45e-06 | 1.26e-06 | 143 |
hsa05163210 | Esophagus | ESCC | Human cytomegalovirus infection | 148/4205 | 225/8465 | 5.73e-07 | 4.00e-06 | 2.05e-06 | 148 |
hsa051609 | Esophagus | ESCC | Hepatitis C | 107/4205 | 157/8465 | 1.75e-06 | 1.08e-05 | 5.55e-06 | 107 |
hsa051619 | Esophagus | ESCC | Hepatitis B | 108/4205 | 162/8465 | 7.68e-06 | 4.15e-05 | 2.12e-05 | 108 |
hsa04137210 | Esophagus | ESCC | Mitophagy - animal | 54/4205 | 72/8465 | 9.33e-06 | 4.96e-05 | 2.54e-05 | 54 |
hsa0465727 | Esophagus | ESCC | IL-17 signaling pathway | 66/4205 | 94/8465 | 3.93e-05 | 1.75e-04 | 8.99e-05 | 66 |
hsa051629 | Esophagus | ESCC | Measles | 90/4205 | 139/8465 | 2.16e-04 | 7.87e-04 | 4.03e-04 | 90 |
hsa0462122 | Esophagus | ESCC | NOD-like receptor signaling pathway | 116/4205 | 186/8465 | 2.90e-04 | 1.03e-03 | 5.30e-04 | 116 |
hsa046234 | Esophagus | ESCC | Cytosolic DNA-sensing pathway | 49/4205 | 75/8465 | 4.35e-03 | 1.12e-02 | 5.74e-03 | 49 |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
TBK1 | SNV | Missense_Mutation | novel | c.1664N>A | p.Leu555Gln | p.L555Q | Q9UHD2 | protein_coding | deleterious(0.01) | probably_damaging(0.995) | TCGA-A8-A07J-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | 5-fluorouracil | CR |
TBK1 | SNV | Missense_Mutation | | c.81A>T | p.Arg27Ser | p.R27S | Q9UHD2 | protein_coding | deleterious(0.01) | probably_damaging(0.991) | TCGA-AN-A0FW-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD |
TBK1 | SNV | Missense_Mutation | novel | c.1136N>C | p.Ile379Thr | p.I379T | Q9UHD2 | protein_coding | deleterious(0) | probably_damaging(0.966) | TCGA-LL-A73Y-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Chemotherapy | taxotere | SD |
TBK1 | insertion | Frame_Shift_Ins | novel | c.1662_1663insTT | p.Leu555PhefsTer3 | p.L555Ffs*3 | Q9UHD2 | protein_coding | | | TCGA-A8-A07J-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | 5-fluorouracil | CR |
TBK1 | deletion | Frame_Shift_Del | novel | c.388delN | p.Gly130ValfsTer2 | p.G130Vfs*2 | Q9UHD2 | protein_coding | | | TCGA-D8-A27V-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | tamoxiphen | SD |
TBK1 | SNV | Missense_Mutation | novel | c.77N>A | p.Gly26Glu | p.G26E | Q9UHD2 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-C5-A2LZ-01 | Cervix | cervical & endocervical cancer | Female | >=65 | III/IV | Unknown | Unknown | PD |
TBK1 | SNV | Missense_Mutation | novel | c.1478N>T | p.Ala493Val | p.A493V | Q9UHD2 | protein_coding | tolerated(0.3) | benign(0) | TCGA-EA-A410-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
TBK1 | SNV | Missense_Mutation | | c.19N>T | p.His7Tyr | p.H7Y | Q9UHD2 | protein_coding | tolerated(1) | benign(0) | TCGA-Q1-A73O-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
TBK1 | SNV | Missense_Mutation | | c.1738N>A | p.Glu580Lys | p.E580K | Q9UHD2 | protein_coding | deleterious(0.01) | probably_damaging(0.971) | TCGA-Q1-A73O-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
TBK1 | SNV | Missense_Mutation | | c.177N>C | p.Leu59Phe | p.L59F | Q9UHD2 | protein_coding | deleterious(0) | probably_damaging(0.998) | TCGA-VS-A9UO-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
29110 | TBK1 | ENZYME, SERINE THREONINE KINASE, KINASE, DRUGGABLE GENOME | | TAMATINIB | R-406 | |
29110 | TBK1 | ENZYME, SERINE THREONINE KINASE, KINASE, DRUGGABLE GENOME | | AZD-1775 | ADAVOSERTIB | |
29110 | TBK1 | ENZYME, SERINE THREONINE KINASE, KINASE, DRUGGABLE GENOME | | DNDI1417467 | CHEMBL1997335 | |
29110 | TBK1 | ENZYME, SERINE THREONINE KINASE, KINASE, DRUGGABLE GENOME | | Pyrimidinyl compound 6 | | |
29110 | TBK1 | ENZYME, SERINE THREONINE KINASE, KINASE, DRUGGABLE GENOME | | Pyrimidinyl compound 7 | | |
29110 | TBK1 | ENZYME, SERINE THREONINE KINASE, KINASE, DRUGGABLE GENOME | | Pyrimidinyl compound 1 | | |
29110 | TBK1 | ENZYME, SERINE THREONINE KINASE, KINASE, DRUGGABLE GENOME | | PF-562271 | PF-00562271 | |
29110 | TBK1 | ENZYME, SERINE THREONINE KINASE, KINASE, DRUGGABLE GENOME | inhibitor | 336446964 | | |
29110 | TBK1 | ENZYME, SERINE THREONINE KINASE, KINASE, DRUGGABLE GENOME | inhibitor | 336446965 | | |
29110 | TBK1 | ENZYME, SERINE THREONINE KINASE, KINASE, DRUGGABLE GENOME | | CYC-116 | CYC-116 | |