Tissue | Expression Dynamics | Abbreviation |
Colorectum (GSE201348) | | FAP: Familial adenomatous polyposis |
CRC: Colorectal cancer |
Colorectum (HTA11) | | AD: Adenomas |
SER: Sessile serrated lesions |
MSI-H: Microsatellite-high colorectal cancer |
MSS: Microsatellite stable colorectal cancer |
Endometrium | | AEH: Atypical endometrial hyperplasia |
EEC: Endometrioid Cancer |
GC | | CAG: Chronic atrophic gastritis |
CAG with IM: Chronic atrophic gastritis with intestinal metaplasia |
CSG: Chronic superficial gastritis |
GC: Gastric cancer |
SIM: Severe intestinal metaplasia |
WIM: Wild intestinal metaplasia |
Liver | | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
Oral Cavity | | EOLP: Erosive Oral lichen planus |
LP: leukoplakia |
NEOLP: Non-erosive oral lichen planus |
OSCC: Oral squamous cell carcinoma |
Thyroid | | ATC: Anaplastic thyroid cancer |
HT: Hashimoto's thyroiditis |
PTC: Papillary thyroid cancer |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:000697933 | Oral cavity | NEOLP | response to oxidative stress | 94/2005 | 446/18723 | 7.53e-11 | 8.58e-09 | 94 |
GO:004254232 | Oral cavity | NEOLP | response to hydrogen peroxide | 41/2005 | 146/18723 | 4.37e-09 | 2.50e-07 | 41 |
GO:009886931 | Oral cavity | NEOLP | cellular oxidant detoxification | 30/2005 | 101/18723 | 1.30e-07 | 4.62e-06 | 30 |
GO:000963633 | Oral cavity | NEOLP | response to toxic substance | 56/2005 | 262/18723 | 3.13e-07 | 9.85e-06 | 56 |
GO:199074832 | Oral cavity | NEOLP | cellular detoxification | 32/2005 | 116/18723 | 3.30e-07 | 1.03e-05 | 32 |
GO:009723732 | Oral cavity | NEOLP | cellular response to toxic substance | 33/2005 | 124/18723 | 5.39e-07 | 1.61e-05 | 33 |
GO:009875432 | Oral cavity | NEOLP | detoxification | 36/2005 | 152/18723 | 3.42e-06 | 7.61e-05 | 36 |
GO:007259332 | Oral cavity | NEOLP | reactive oxygen species metabolic process | 46/2005 | 239/18723 | 5.77e-05 | 7.77e-04 | 46 |
GO:004274314 | Oral cavity | NEOLP | hydrogen peroxide metabolic process | 15/2005 | 58/18723 | 9.07e-04 | 7.10e-03 | 15 |
GO:00427446 | Oral cavity | NEOLP | hydrogen peroxide catabolic process | 9/2005 | 32/18723 | 5.18e-03 | 2.78e-02 | 9 |
GO:00987546 | Stomach | GC | detoxification | 37/1159 | 152/18723 | 3.63e-13 | 1.52e-10 | 37 |
GO:00096366 | Stomach | GC | response to toxic substance | 50/1159 | 262/18723 | 7.42e-13 | 2.69e-10 | 50 |
GO:00972376 | Stomach | GC | cellular response to toxic substance | 31/1159 | 124/18723 | 1.40e-11 | 3.31e-09 | 31 |
GO:19907486 | Stomach | GC | cellular detoxification | 29/1159 | 116/18723 | 6.36e-11 | 1.19e-08 | 29 |
GO:00988696 | Stomach | GC | cellular oxidant detoxification | 24/1159 | 101/18723 | 8.32e-09 | 8.22e-07 | 24 |
GO:00069796 | Stomach | GC | response to oxidative stress | 60/1159 | 446/18723 | 1.10e-08 | 1.01e-06 | 60 |
GO:00725936 | Stomach | GC | reactive oxygen species metabolic process | 37/1159 | 239/18723 | 2.28e-07 | 1.23e-05 | 37 |
GO:00003026 | Stomach | GC | response to reactive oxygen species | 32/1159 | 222/18723 | 6.94e-06 | 2.57e-04 | 32 |
GO:00427436 | Stomach | GC | hydrogen peroxide metabolic process | 13/1159 | 58/18723 | 4.24e-05 | 1.04e-03 | 13 |
GO:00425426 | Stomach | GC | response to hydrogen peroxide | 22/1159 | 146/18723 | 9.34e-05 | 1.92e-03 | 22 |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
HBA2 | SNV | Missense_Mutation | rs33933481 | c.379G>T | p.Asp127Tyr | p.D127Y | P69905 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-A2-A25A-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unspecific | Cytoxan | SD |
HBA2 | SNV | Missense_Mutation | novel | c.325A>G | p.Thr109Ala | p.T109A | P69905 | protein_coding | tolerated(0.05) | benign(0.185) | TCGA-BH-A18G-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
HBA2 | SNV | Missense_Mutation | rs281864887 | c.343N>A | p.Pro115Thr | p.P115T | P69905 | protein_coding | deleterious(0.01) | benign(0.132) | TCGA-DS-A1OD-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | SD |
HBA2 | SNV | Missense_Mutation | rs267607269 | c.344N>G | p.Pro115Arg | p.P115R | P69905 | protein_coding | deleterious(0.02) | benign(0.012) | TCGA-DS-A1OD-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | SD |
HBA2 | SNV | Missense_Mutation | | c.103N>A | p.Leu35Met | p.L35M | P69905 | protein_coding | tolerated(0.09) | benign(0.026) | TCGA-AP-A0LM-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | cisplatin | SD |
HBA2 | SNV | Missense_Mutation | rs3209323 | c.359C>T | p.Pro120Leu | p.P120L | P69905 | protein_coding | deleterious(0) | possibly_damaging(0.779) | TCGA-BS-A0UF-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
HBA2 | SNV | Missense_Mutation | | c.374N>T | p.Ser125Phe | p.S125F | P69905 | protein_coding | deleterious(0) | possibly_damaging(0.773) | TCGA-05-5425-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Targeted Molecular therapy | gefitinib | PD |
HBA2 | SNV | Missense_Mutation | | c.413N>T | p.Thr138Ile | p.T138I | P69905 | protein_coding | deleterious(0.04) | benign(0.028) | TCGA-78-7148-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
HBA2 | SNV | Missense_Mutation | novel | c.376N>G | p.Leu126Val | p.L126V | P69905 | protein_coding | tolerated(0.3) | benign(0.007) | TCGA-21-1081-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
HBA2 | SNV | Missense_Mutation | rs281864887 | c.343N>A | p.Pro115Thr | p.P115T | P69905 | protein_coding | deleterious(0.01) | benign(0.132) | TCGA-90-7964-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |