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Gene: ATP5F1D |
Gene summary for ATP5F1D |
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Gene information | Species | Human | Gene symbol | ATP5F1D | Gene ID | 513 |
Gene name | ATP synthase F1 subunit delta | |
Gene Alias | ATP5D | |
Cytomap | 19p13.3 | |
Gene Type | protein-coding | GO ID | GO:0006091 | UniProtAcc | P30049 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
513 | ATP5F1D | GSM4909285 | Human | Breast | IDC | 5.17e-11 | 1.44e-01 | 0.21 |
513 | ATP5F1D | GSM4909286 | Human | Breast | IDC | 2.37e-19 | 1.31e-02 | 0.1081 |
513 | ATP5F1D | GSM4909290 | Human | Breast | IDC | 3.46e-04 | 1.46e-01 | 0.2096 |
513 | ATP5F1D | GSM4909291 | Human | Breast | IDC | 8.76e-10 | 4.79e-01 | 0.1753 |
513 | ATP5F1D | GSM4909293 | Human | Breast | IDC | 2.10e-10 | 1.11e-01 | 0.1581 |
513 | ATP5F1D | GSM4909296 | Human | Breast | IDC | 1.94e-09 | -4.02e-01 | 0.1524 |
513 | ATP5F1D | GSM4909297 | Human | Breast | IDC | 5.92e-06 | -1.30e-02 | 0.1517 |
513 | ATP5F1D | GSM4909298 | Human | Breast | IDC | 2.43e-13 | 3.46e-01 | 0.1551 |
513 | ATP5F1D | GSM4909299 | Human | Breast | IDC | 2.02e-02 | 2.23e-01 | 0.035 |
513 | ATP5F1D | GSM4909301 | Human | Breast | IDC | 1.26e-02 | 3.05e-01 | 0.1577 |
513 | ATP5F1D | GSM4909302 | Human | Breast | IDC | 7.25e-05 | 3.64e-01 | 0.1545 |
513 | ATP5F1D | GSM4909303 | Human | Breast | IDC | 2.40e-05 | 4.28e-01 | 0.0438 |
513 | ATP5F1D | GSM4909304 | Human | Breast | IDC | 2.15e-26 | 6.47e-01 | 0.1636 |
513 | ATP5F1D | GSM4909305 | Human | Breast | IDC | 1.20e-17 | 3.88e-01 | 0.0436 |
513 | ATP5F1D | GSM4909306 | Human | Breast | IDC | 7.51e-07 | 3.51e-01 | 0.1564 |
513 | ATP5F1D | GSM4909308 | Human | Breast | IDC | 9.05e-29 | 4.72e-01 | 0.158 |
513 | ATP5F1D | GSM4909311 | Human | Breast | IDC | 5.87e-29 | -5.14e-02 | 0.1534 |
513 | ATP5F1D | GSM4909317 | Human | Breast | IDC | 5.07e-19 | 3.70e-01 | 0.1355 |
513 | ATP5F1D | GSM4909318 | Human | Breast | IDC | 3.67e-05 | 6.50e-01 | 0.2031 |
513 | ATP5F1D | GSM4909319 | Human | Breast | IDC | 6.74e-39 | -2.27e-01 | 0.1563 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:001598623 | Breast | DCIS | ATP synthesis coupled proton transport | 16/1390 | 26/18723 | 2.04e-12 | 4.44e-10 | 16 |
GO:190260022 | Breast | DCIS | proton transmembrane transport | 40/1390 | 157/18723 | 2.77e-12 | 5.80e-10 | 40 |
GO:004277623 | Breast | DCIS | mitochondrial ATP synthesis coupled proton transport | 13/1390 | 19/18723 | 3.51e-11 | 5.22e-09 | 13 |
GO:000920623 | Breast | DCIS | purine ribonucleoside triphosphate biosynthetic process | 24/1390 | 68/18723 | 4.03e-11 | 5.74e-09 | 24 |
GO:000683923 | Breast | DCIS | mitochondrial transport | 51/1390 | 254/18723 | 5.04e-11 | 6.79e-09 | 51 |
GO:000914523 | Breast | DCIS | purine nucleoside triphosphate biosynthetic process | 24/1390 | 69/18723 | 5.75e-11 | 7.56e-09 | 24 |
GO:001003824 | Breast | DCIS | response to metal ion | 65/1390 | 373/18723 | 8.03e-11 | 9.88e-09 | 65 |
GO:000675423 | Breast | DCIS | ATP biosynthetic process | 21/1390 | 57/18723 | 2.64e-10 | 3.11e-08 | 21 |
GO:000920123 | Breast | DCIS | ribonucleoside triphosphate biosynthetic process | 24/1390 | 74/18723 | 3.04e-10 | 3.44e-08 | 24 |
GO:000914423 | Breast | DCIS | purine nucleoside triphosphate metabolic process | 26/1390 | 88/18723 | 5.62e-10 | 5.89e-08 | 26 |
GO:000920523 | Breast | DCIS | purine ribonucleoside triphosphate metabolic process | 25/1390 | 82/18723 | 5.75e-10 | 5.91e-08 | 25 |
GO:000914223 | Breast | DCIS | nucleoside triphosphate biosynthetic process | 25/1390 | 85/18723 | 1.33e-09 | 1.33e-07 | 25 |
GO:000919923 | Breast | DCIS | ribonucleoside triphosphate metabolic process | 25/1390 | 89/18723 | 3.84e-09 | 3.24e-07 | 25 |
GO:000914123 | Breast | DCIS | nucleoside triphosphate metabolic process | 28/1390 | 112/18723 | 8.02e-09 | 6.30e-07 | 28 |
GO:199054222 | Breast | DCIS | mitochondrial transmembrane transport | 25/1390 | 102/18723 | 7.63e-08 | 4.45e-06 | 25 |
GO:000915223 | Breast | DCIS | purine ribonucleotide biosynthetic process | 34/1390 | 169/18723 | 7.77e-08 | 4.47e-06 | 34 |
GO:004639022 | Breast | DCIS | ribose phosphate biosynthetic process | 36/1390 | 190/18723 | 1.59e-07 | 8.19e-06 | 36 |
GO:000926022 | Breast | DCIS | ribonucleotide biosynthetic process | 35/1390 | 182/18723 | 1.62e-07 | 8.24e-06 | 35 |
GO:001969324 | Breast | DCIS | ribose phosphate metabolic process | 58/1390 | 396/18723 | 4.80e-07 | 2.11e-05 | 58 |
GO:000915024 | Breast | DCIS | purine ribonucleotide metabolic process | 55/1390 | 368/18723 | 4.92e-07 | 2.14e-05 | 55 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa0501218 | Breast | Precancer | Parkinson disease | 99/684 | 266/8465 | 3.58e-42 | 5.65e-40 | 4.33e-40 | 99 |
hsa0502016 | Breast | Precancer | Prion disease | 95/684 | 273/8465 | 1.39e-37 | 1.46e-35 | 1.12e-35 | 95 |
hsa0501616 | Breast | Precancer | Huntington disease | 98/684 | 306/8465 | 2.85e-35 | 2.25e-33 | 1.72e-33 | 98 |
hsa0019016 | Breast | Precancer | Oxidative phosphorylation | 59/684 | 134/8465 | 6.15e-30 | 3.24e-28 | 2.48e-28 | 59 |
hsa0501016 | Breast | Precancer | Alzheimer disease | 103/684 | 384/8465 | 1.03e-29 | 4.66e-28 | 3.57e-28 | 103 |
hsa0501416 | Breast | Precancer | Amyotrophic lateral sclerosis | 98/684 | 364/8465 | 2.13e-28 | 8.41e-27 | 6.44e-27 | 98 |
hsa0502216 | Breast | Precancer | Pathways of neurodegeneration - multiple diseases | 112/684 | 476/8465 | 6.96e-27 | 2.44e-25 | 1.87e-25 | 112 |
hsa0520818 | Breast | Precancer | Chemical carcinogenesis - reactive oxygen species | 68/684 | 223/8465 | 3.61e-23 | 1.14e-21 | 8.73e-22 | 68 |
hsa0471418 | Breast | Precancer | Thermogenesis | 68/684 | 232/8465 | 4.40e-22 | 1.26e-20 | 9.69e-21 | 68 |
hsa0541518 | Breast | Precancer | Diabetic cardiomyopathy | 63/684 | 203/8465 | 5.63e-22 | 1.48e-20 | 1.14e-20 | 63 |
hsa0501219 | Breast | Precancer | Parkinson disease | 99/684 | 266/8465 | 3.58e-42 | 5.65e-40 | 4.33e-40 | 99 |
hsa0502017 | Breast | Precancer | Prion disease | 95/684 | 273/8465 | 1.39e-37 | 1.46e-35 | 1.12e-35 | 95 |
hsa0501617 | Breast | Precancer | Huntington disease | 98/684 | 306/8465 | 2.85e-35 | 2.25e-33 | 1.72e-33 | 98 |
hsa0019017 | Breast | Precancer | Oxidative phosphorylation | 59/684 | 134/8465 | 6.15e-30 | 3.24e-28 | 2.48e-28 | 59 |
hsa0501017 | Breast | Precancer | Alzheimer disease | 103/684 | 384/8465 | 1.03e-29 | 4.66e-28 | 3.57e-28 | 103 |
hsa0501417 | Breast | Precancer | Amyotrophic lateral sclerosis | 98/684 | 364/8465 | 2.13e-28 | 8.41e-27 | 6.44e-27 | 98 |
hsa0502217 | Breast | Precancer | Pathways of neurodegeneration - multiple diseases | 112/684 | 476/8465 | 6.96e-27 | 2.44e-25 | 1.87e-25 | 112 |
hsa0520819 | Breast | Precancer | Chemical carcinogenesis - reactive oxygen species | 68/684 | 223/8465 | 3.61e-23 | 1.14e-21 | 8.73e-22 | 68 |
hsa0471419 | Breast | Precancer | Thermogenesis | 68/684 | 232/8465 | 4.40e-22 | 1.26e-20 | 9.69e-21 | 68 |
hsa0541519 | Breast | Precancer | Diabetic cardiomyopathy | 63/684 | 203/8465 | 5.63e-22 | 1.48e-20 | 1.14e-20 | 63 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
513 | ATP5F1D | TRANSPORTER | ENFLURANE | ENFLURANE | ||
513 | ATP5F1D | TRANSPORTER | DESFLURANE | DESFLURANE | ||
513 | ATP5F1D | TRANSPORTER | METHOXYFLURANE | METHOXYFLURANE | ||
513 | ATP5F1D | TRANSPORTER | METHOXYFLURANE | METHOXYFLURANE | ||
513 | ATP5F1D | TRANSPORTER | HALOTHANE | HALOTHANE | ||
513 | ATP5F1D | TRANSPORTER | DESFLURANE | DESFLURANE | ||
513 | ATP5F1D | TRANSPORTER | HALOTHANE | HALOTHANE | ||
513 | ATP5F1D | TRANSPORTER | SEVOFLURANE | SEVOFLURANE | ||
513 | ATP5F1D | TRANSPORTER | SEVOFLURANE | SEVOFLURANE | ||
513 | ATP5F1D | TRANSPORTER | ENFLURANE | ENFLURANE |
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