Tissue | Expression Dynamics | Abbreviation |
Breast | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Breast/RHOT1_pca_on_diff_genes.png) | IDC: Invasive ductal carcinoma |
DCIS: Ductal carcinoma in situ |
Precancer(BRCA1-mut): Precancerous lesion from BRCA1 mutation carriers |
Esophagus | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Esophagus/RHOT1_pca_on_diff_genes.png) | ESCC: Esophageal squamous cell carcinoma |
HGIN: High-grade intraepithelial neoplasias |
LGIN: Low-grade intraepithelial neoplasias |
Lung | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Lung/RHOT1_pca_on_diff_genes.png) | AAH: Atypical adenomatous hyperplasia |
AIS: Adenocarcinoma in situ |
IAC: Invasive lung adenocarcinoma |
MIA: Minimally invasive adenocarcinoma |
Thyroid | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Thyroid/RHOT1_pca_on_diff_genes.png) | ATC: Anaplastic thyroid cancer |
HT: Hashimoto's thyroiditis |
PTC: Papillary thyroid cancer |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:001082124 | Thyroid | PTC | regulation of mitochondrion organization | 78/5968 | 144/18723 | 2.38e-08 | 5.43e-07 | 78 |
GO:00109709 | Thyroid | PTC | transport along microtubule | 80/5968 | 155/18723 | 2.48e-07 | 4.32e-06 | 80 |
GO:000863727 | Thyroid | PTC | apoptotic mitochondrial changes | 57/5968 | 107/18723 | 3.54e-06 | 4.55e-05 | 57 |
GO:00723848 | Thyroid | PTC | organelle transport along microtubule | 47/5968 | 85/18723 | 6.61e-06 | 7.83e-05 | 47 |
GO:00991115 | Thyroid | PTC | microtubule-based transport | 88/5968 | 190/18723 | 2.08e-05 | 2.08e-04 | 88 |
GO:00328866 | Thyroid | PTC | regulation of microtubule-based process | 105/5968 | 240/18723 | 6.91e-05 | 6.03e-04 | 105 |
GO:004690219 | Thyroid | PTC | regulation of mitochondrial membrane permeability | 35/5968 | 63/18723 | 8.50e-05 | 7.08e-04 | 35 |
GO:009055918 | Thyroid | PTC | regulation of membrane permeability | 41/5968 | 78/18723 | 1.18e-04 | 9.44e-04 | 41 |
GO:009734516 | Thyroid | PTC | mitochondrial outer membrane permeabilization | 19/5968 | 32/18723 | 1.21e-03 | 6.94e-03 | 19 |
GO:00516544 | Thyroid | PTC | establishment of mitochondrion localization | 17/5968 | 29/18723 | 2.65e-03 | 1.35e-02 | 17 |
GO:003579410 | Thyroid | PTC | positive regulation of mitochondrial membrane permeability | 23/5968 | 43/18723 | 2.66e-03 | 1.35e-02 | 23 |
GO:190268615 | Thyroid | PTC | mitochondrial outer membrane permeabilization involved in programmed cell death | 21/5968 | 40/18723 | 5.37e-03 | 2.47e-02 | 21 |
GO:00346433 | Thyroid | PTC | establishment of mitochondrion localization, microtubule-mediated | 15/5968 | 26/18723 | 5.77e-03 | 2.60e-02 | 15 |
GO:00474973 | Thyroid | PTC | mitochondrion transport along microtubule | 15/5968 | 26/18723 | 5.77e-03 | 2.60e-02 | 15 |
GO:190571010 | Thyroid | PTC | positive regulation of membrane permeability | 24/5968 | 48/18723 | 6.73e-03 | 2.90e-02 | 24 |
GO:00516465 | Thyroid | PTC | mitochondrion localization | 24/5968 | 50/18723 | 1.25e-02 | 4.88e-02 | 24 |
GO:003238632 | Thyroid | ATC | regulation of intracellular transport | 203/6293 | 337/18723 | 6.16e-24 | 1.85e-21 | 203 |
GO:000683929 | Thyroid | ATC | mitochondrial transport | 151/6293 | 254/18723 | 2.07e-17 | 2.14e-15 | 151 |
GO:005165625 | Thyroid | ATC | establishment of organelle localization | 206/6293 | 390/18723 | 2.62e-15 | 1.84e-13 | 206 |
GO:003070532 | Thyroid | ATC | cytoskeleton-dependent intracellular transport | 105/6293 | 195/18723 | 4.31e-09 | 9.70e-08 | 105 |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
RHOT1 | SNV | Missense_Mutation | | c.271G>A | p.Asp91Asn | p.D91N | Q8IXI2 | protein_coding | tolerated(0.07) | benign(0.031) | TCGA-A8-A09G-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD |
RHOT1 | SNV | Missense_Mutation | | c.690N>T | p.Lys230Asn | p.K230N | Q8IXI2 | protein_coding | deleterious(0) | probably_damaging(0.962) | TCGA-AN-A046-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
RHOT1 | SNV | Missense_Mutation | | c.854N>G | p.Glu285Gly | p.E285G | Q8IXI2 | protein_coding | deleterious(0) | possibly_damaging(0.562) | TCGA-BH-A0HA-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
RHOT1 | SNV | Missense_Mutation | | c.115N>C | p.Glu39Gln | p.E39Q | Q8IXI2 | protein_coding | deleterious(0) | probably_damaging(0.986) | TCGA-BH-A18P-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | PD |
RHOT1 | SNV | Missense_Mutation | | c.1795N>C | p.Glu599Gln | p.E599Q | Q8IXI2 | protein_coding | tolerated_low_confidence(0.55) | benign(0.023) | TCGA-D8-A1Y0-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Chemotherapy | cyclophosphamide+methotrexatum+fluorouracillum | SD |
RHOT1 | SNV | Missense_Mutation | novel | c.41N>T | p.Arg14Ile | p.R14I | Q8IXI2 | protein_coding | deleterious(0.03) | benign(0.037) | TCGA-LL-A73Y-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Chemotherapy | taxotere | SD |
RHOT1 | SNV | Missense_Mutation | novel | c.82N>C | p.Glu28Gln | p.E28Q | Q8IXI2 | protein_coding | deleterious(0.03) | probably_damaging(0.967) | TCGA-C5-A8XJ-01 | Cervix | cervical & endocervical cancer | Female | >=65 | I/II | Chemotherapy | cisplatin | SD |
RHOT1 | SNV | Missense_Mutation | novel | c.664N>A | p.Ala222Thr | p.A222T | Q8IXI2 | protein_coding | tolerated(0.18) | benign(0.053) | TCGA-EA-A3HU-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
RHOT1 | SNV | Missense_Mutation | | c.727N>A | p.Asp243Asn | p.D243N | Q8IXI2 | protein_coding | tolerated(0.2) | benign(0.017) | TCGA-Q1-A73O-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
RHOT1 | SNV | Missense_Mutation | | c.979N>T | p.Asp327Tyr | p.D327Y | Q8IXI2 | protein_coding | deleterious(0.03) | benign(0.213) | TCGA-AA-A02R-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |