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Gene: EIF2AK4 |
Gene summary for EIF2AK4 |
Gene summary. |
Gene information | Species | Human | Gene symbol | EIF2AK4 | Gene ID | 440275 |
Gene name | eukaryotic translation initiation factor 2 alpha kinase 4 | |
Gene Alias | GCN2 | |
Cytomap | 15q15.1 | |
Gene Type | protein-coding | GO ID | GO:0000075 | UniProtAcc | Q9P2K8 |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
440275 | EIF2AK4 | LZE2T | Human | Esophagus | ESCC | 1.25e-03 | 8.29e-01 | 0.082 |
440275 | EIF2AK4 | LZE4T | Human | Esophagus | ESCC | 5.86e-11 | 5.37e-01 | 0.0811 |
440275 | EIF2AK4 | LZE20T | Human | Esophagus | ESCC | 2.15e-04 | 1.19e-01 | 0.0662 |
440275 | EIF2AK4 | LZE24T | Human | Esophagus | ESCC | 2.08e-14 | 4.77e-01 | 0.0596 |
440275 | EIF2AK4 | LZE21T | Human | Esophagus | ESCC | 2.87e-02 | 1.06e-01 | 0.0655 |
440275 | EIF2AK4 | P1T-E | Human | Esophagus | ESCC | 1.21e-21 | 9.74e-01 | 0.0875 |
440275 | EIF2AK4 | P2T-E | Human | Esophagus | ESCC | 3.00e-43 | 6.76e-01 | 0.1177 |
440275 | EIF2AK4 | P4T-E | Human | Esophagus | ESCC | 7.45e-39 | 8.73e-01 | 0.1323 |
440275 | EIF2AK4 | P5T-E | Human | Esophagus | ESCC | 2.23e-21 | 3.77e-01 | 0.1327 |
440275 | EIF2AK4 | P8T-E | Human | Esophagus | ESCC | 3.63e-57 | 9.44e-01 | 0.0889 |
440275 | EIF2AK4 | P9T-E | Human | Esophagus | ESCC | 1.25e-22 | 5.69e-01 | 0.1131 |
440275 | EIF2AK4 | P10T-E | Human | Esophagus | ESCC | 1.09e-46 | 7.72e-01 | 0.116 |
440275 | EIF2AK4 | P11T-E | Human | Esophagus | ESCC | 9.61e-13 | 6.16e-01 | 0.1426 |
440275 | EIF2AK4 | P12T-E | Human | Esophagus | ESCC | 1.30e-46 | 8.93e-01 | 0.1122 |
440275 | EIF2AK4 | P15T-E | Human | Esophagus | ESCC | 1.36e-12 | 4.26e-01 | 0.1149 |
440275 | EIF2AK4 | P16T-E | Human | Esophagus | ESCC | 7.50e-34 | 5.73e-01 | 0.1153 |
440275 | EIF2AK4 | P17T-E | Human | Esophagus | ESCC | 3.19e-15 | 6.14e-01 | 0.1278 |
440275 | EIF2AK4 | P19T-E | Human | Esophagus | ESCC | 5.55e-06 | 4.98e-01 | 0.1662 |
440275 | EIF2AK4 | P20T-E | Human | Esophagus | ESCC | 4.82e-30 | 7.13e-01 | 0.1124 |
440275 | EIF2AK4 | P21T-E | Human | Esophagus | ESCC | 4.96e-39 | 6.73e-01 | 0.1617 |
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Transcriptomic changes along malignancy continuum. |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:004482714 | Esophagus | ESCC | modulation by host of viral genome replication | 14/8552 | 19/18723 | 1.27e-02 | 4.21e-02 | 14 |
GO:001603222 | Liver | HCC | viral process | 286/7958 | 415/18723 | 4.41e-28 | 1.86e-25 | 286 |
GO:003497612 | Liver | HCC | response to endoplasmic reticulum stress | 189/7958 | 256/18723 | 1.43e-24 | 4.06e-22 | 189 |
GO:001905822 | Liver | HCC | viral life cycle | 209/7958 | 317/18723 | 2.05e-17 | 2.09e-15 | 209 |
GO:000641722 | Liver | HCC | regulation of translation | 287/7958 | 468/18723 | 8.79e-17 | 8.08e-15 | 287 |
GO:000641322 | Liver | HCC | translational initiation | 94/7958 | 118/18723 | 1.39e-16 | 1.24e-14 | 94 |
GO:001908021 | Liver | HCC | viral gene expression | 77/7958 | 94/18723 | 4.33e-15 | 3.12e-13 | 77 |
GO:004440322 | Liver | HCC | biological process involved in symbiotic interaction | 183/7958 | 290/18723 | 9.13e-13 | 4.59e-11 | 183 |
GO:003166722 | Liver | HCC | response to nutrient levels | 276/7958 | 474/18723 | 2.30e-12 | 1.08e-10 | 276 |
GO:004572712 | Liver | HCC | positive regulation of translation | 97/7958 | 136/18723 | 8.51e-12 | 3.55e-10 | 97 |
GO:001907922 | Liver | HCC | viral genome replication | 94/7958 | 131/18723 | 1.02e-11 | 4.18e-10 | 94 |
GO:003425022 | Liver | HCC | positive regulation of cellular amide metabolic process | 110/7958 | 162/18723 | 5.14e-11 | 1.92e-09 | 110 |
GO:000644622 | Liver | HCC | regulation of translational initiation | 62/7958 | 79/18723 | 6.85e-11 | 2.48e-09 | 62 |
GO:007149622 | Liver | HCC | cellular response to external stimulus | 191/7958 | 320/18723 | 3.40e-10 | 1.13e-08 | 191 |
GO:001604921 | Liver | HCC | cell growth | 269/7958 | 482/18723 | 1.84e-09 | 5.35e-08 | 269 |
GO:000961511 | Liver | HCC | response to virus | 210/7958 | 367/18723 | 7.32e-09 | 1.86e-07 | 210 |
GO:003166812 | Liver | HCC | cellular response to extracellular stimulus | 149/7958 | 246/18723 | 7.35e-09 | 1.86e-07 | 149 |
GO:004259421 | Liver | HCC | response to starvation | 121/7958 | 197/18723 | 6.08e-08 | 1.28e-06 | 121 |
GO:003166912 | Liver | HCC | cellular response to nutrient levels | 130/7958 | 215/18723 | 7.52e-08 | 1.51e-06 | 130 |
GO:00518172 | Liver | HCC | modulation of process of other organism involved in symbiotic interaction | 56/7958 | 81/18723 | 1.11e-06 | 1.65e-05 | 56 |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa04141211 | Esophagus | ESCC | Protein processing in endoplasmic reticulum | 147/4205 | 174/8465 | 3.29e-22 | 1.10e-19 | 5.64e-20 | 147 |
hsa0414010 | Esophagus | ESCC | Autophagy - animal | 101/4205 | 141/8465 | 7.60e-08 | 6.21e-07 | 3.18e-07 | 101 |
hsa051609 | Esophagus | ESCC | Hepatitis C | 107/4205 | 157/8465 | 1.75e-06 | 1.08e-05 | 5.55e-06 | 107 |
hsa051629 | Esophagus | ESCC | Measles | 90/4205 | 139/8465 | 2.16e-04 | 7.87e-04 | 4.03e-04 | 90 |
hsa04141310 | Esophagus | ESCC | Protein processing in endoplasmic reticulum | 147/4205 | 174/8465 | 3.29e-22 | 1.10e-19 | 5.64e-20 | 147 |
hsa0414015 | Esophagus | ESCC | Autophagy - animal | 101/4205 | 141/8465 | 7.60e-08 | 6.21e-07 | 3.18e-07 | 101 |
hsa0516016 | Esophagus | ESCC | Hepatitis C | 107/4205 | 157/8465 | 1.75e-06 | 1.08e-05 | 5.55e-06 | 107 |
hsa0516213 | Esophagus | ESCC | Measles | 90/4205 | 139/8465 | 2.16e-04 | 7.87e-04 | 4.03e-04 | 90 |
hsa0414122 | Liver | HCC | Protein processing in endoplasmic reticulum | 146/4020 | 174/8465 | 7.34e-24 | 2.46e-21 | 1.37e-21 | 146 |
hsa0414021 | Liver | HCC | Autophagy - animal | 99/4020 | 141/8465 | 3.08e-08 | 4.70e-07 | 2.61e-07 | 99 |
hsa0516021 | Liver | HCC | Hepatitis C | 94/4020 | 157/8465 | 1.11e-03 | 4.10e-03 | 2.28e-03 | 94 |
hsa0414132 | Liver | HCC | Protein processing in endoplasmic reticulum | 146/4020 | 174/8465 | 7.34e-24 | 2.46e-21 | 1.37e-21 | 146 |
hsa0414031 | Liver | HCC | Autophagy - animal | 99/4020 | 141/8465 | 3.08e-08 | 4.70e-07 | 2.61e-07 | 99 |
hsa0516031 | Liver | HCC | Hepatitis C | 94/4020 | 157/8465 | 1.11e-03 | 4.10e-03 | 2.28e-03 | 94 |
hsa0414130 | Oral cavity | OSCC | Protein processing in endoplasmic reticulum | 143/3704 | 174/8465 | 6.82e-26 | 2.28e-23 | 1.16e-23 | 143 |
hsa051608 | Oral cavity | OSCC | Hepatitis C | 103/3704 | 157/8465 | 2.17e-08 | 1.96e-07 | 9.99e-08 | 103 |
hsa041409 | Oral cavity | OSCC | Autophagy - animal | 94/3704 | 141/8465 | 2.73e-08 | 2.38e-07 | 1.21e-07 | 94 |
hsa051628 | Oral cavity | OSCC | Measles | 90/3704 | 139/8465 | 4.10e-07 | 2.50e-06 | 1.27e-06 | 90 |
hsa04141113 | Oral cavity | OSCC | Protein processing in endoplasmic reticulum | 143/3704 | 174/8465 | 6.82e-26 | 2.28e-23 | 1.16e-23 | 143 |
hsa0516015 | Oral cavity | OSCC | Hepatitis C | 103/3704 | 157/8465 | 2.17e-08 | 1.96e-07 | 9.99e-08 | 103 |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
EIF2AK4 | SNV | Missense_Mutation | novel | c.1790N>T | p.Gly597Val | p.G597V | Q9P2K8 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-A2-A4RX-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
EIF2AK4 | SNV | Missense_Mutation | novel | c.236N>A | p.Cys79Tyr | p.C79Y | Q9P2K8 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-A7-A6VV-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | cyclophosphamide | CR |
EIF2AK4 | SNV | Missense_Mutation | c.3685G>A | p.Asp1229Asn | p.D1229N | Q9P2K8 | protein_coding | deleterious(0.03) | probably_damaging(0.999) | TCGA-AC-A23H-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | PD | |
EIF2AK4 | SNV | Missense_Mutation | c.3796G>A | p.Asp1266Asn | p.D1266N | Q9P2K8 | protein_coding | tolerated(0.96) | benign(0.01) | TCGA-AC-A23H-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | PD | |
EIF2AK4 | SNV | Missense_Mutation | c.1724N>C | p.Phe575Ser | p.F575S | Q9P2K8 | protein_coding | tolerated(0.2) | benign(0.003) | TCGA-AO-A1KR-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | cyclophosphamide | SD | |
EIF2AK4 | SNV | Missense_Mutation | rs763402151 | c.1378N>C | p.Glu460Gln | p.E460Q | Q9P2K8 | protein_coding | tolerated(0.09) | probably_damaging(0.999) | TCGA-BH-A0B6-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
EIF2AK4 | SNV | Missense_Mutation | c.4701N>C | p.Gln1567His | p.Q1567H | Q9P2K8 | protein_coding | tolerated(0.76) | benign(0.007) | TCGA-BH-A0H5-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | cytoxan | CR | |
EIF2AK4 | SNV | Missense_Mutation | rs752767858 | c.2345N>C | p.Gly782Ala | p.G782A | Q9P2K8 | protein_coding | tolerated(0.67) | benign(0.019) | TCGA-C8-A12X-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
EIF2AK4 | SNV | Missense_Mutation | novel | c.301G>A | p.Glu101Lys | p.E101K | Q9P2K8 | protein_coding | deleterious(0.01) | possibly_damaging(0.808) | TCGA-C8-A26Y-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
EIF2AK4 | SNV | Missense_Mutation | c.3791A>C | p.Lys1264Thr | p.K1264T | Q9P2K8 | protein_coding | deleterious(0.01) | probably_damaging(1) | TCGA-D8-A1JL-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
440275 | EIF2AK4 | KINASE, ENZYME, SERINE THREONINE KINASE, DRUGGABLE GENOME | olanzapine | OLANZAPINE | 24751813 | |
440275 | EIF2AK4 | KINASE, ENZYME, SERINE THREONINE KINASE, DRUGGABLE GENOME | risperidone | RISPERIDONE | 24751813 | |
440275 | EIF2AK4 | KINASE, ENZYME, SERINE THREONINE KINASE, DRUGGABLE GENOME | inhibitor | 249565849 | ||
440275 | EIF2AK4 | KINASE, ENZYME, SERINE THREONINE KINASE, DRUGGABLE GENOME | quetiapine | QUETIAPINE | 24751813 | |
440275 | EIF2AK4 | KINASE, ENZYME, SERINE THREONINE KINASE, DRUGGABLE GENOME | inhibitor | HESPERADIN | HESPERADIN | 19035792 |
440275 | EIF2AK4 | KINASE, ENZYME, SERINE THREONINE KINASE, DRUGGABLE GENOME | haloperidol | HALOPERIDOL | 27023437,24751813 | |
440275 | EIF2AK4 | KINASE, ENZYME, SERINE THREONINE KINASE, DRUGGABLE GENOME | ziprasidone | ZIPRASIDONE | 24751813 |
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