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Gene: DNAJB2 |
Gene summary for DNAJB2 |
Gene summary. |
Gene information | Species | Human | Gene symbol | DNAJB2 | Gene ID | 3300 |
Gene name | DnaJ heat shock protein family (Hsp40) member B2 | |
Gene Alias | CMT2T | |
Cytomap | 2q35 | |
Gene Type | protein-coding | GO ID | GO:0001558 | UniProtAcc | P25686 |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
3300 | DNAJB2 | LZE4T | Human | Esophagus | ESCC | 9.47e-08 | 2.15e-01 | 0.0811 |
3300 | DNAJB2 | LZE20T | Human | Esophagus | ESCC | 3.21e-07 | 2.28e-01 | 0.0662 |
3300 | DNAJB2 | LZE22T | Human | Esophagus | ESCC | 2.97e-04 | 2.15e-01 | 0.068 |
3300 | DNAJB2 | LZE24T | Human | Esophagus | ESCC | 6.53e-16 | 3.96e-01 | 0.0596 |
3300 | DNAJB2 | LZE6T | Human | Esophagus | ESCC | 5.84e-06 | 1.73e-01 | 0.0845 |
3300 | DNAJB2 | P1T-E | Human | Esophagus | ESCC | 1.52e-08 | 3.70e-01 | 0.0875 |
3300 | DNAJB2 | P2T-E | Human | Esophagus | ESCC | 2.87e-23 | 2.94e-01 | 0.1177 |
3300 | DNAJB2 | P4T-E | Human | Esophagus | ESCC | 1.04e-30 | 3.55e-01 | 0.1323 |
3300 | DNAJB2 | P5T-E | Human | Esophagus | ESCC | 1.42e-29 | 5.63e-01 | 0.1327 |
3300 | DNAJB2 | P8T-E | Human | Esophagus | ESCC | 4.27e-16 | 2.27e-01 | 0.0889 |
3300 | DNAJB2 | P9T-E | Human | Esophagus | ESCC | 5.40e-17 | 2.33e-01 | 0.1131 |
3300 | DNAJB2 | P10T-E | Human | Esophagus | ESCC | 3.77e-29 | 4.28e-01 | 0.116 |
3300 | DNAJB2 | P11T-E | Human | Esophagus | ESCC | 6.11e-25 | 9.57e-01 | 0.1426 |
3300 | DNAJB2 | P12T-E | Human | Esophagus | ESCC | 2.64e-23 | 5.29e-01 | 0.1122 |
3300 | DNAJB2 | P15T-E | Human | Esophagus | ESCC | 9.67e-19 | 3.41e-01 | 0.1149 |
3300 | DNAJB2 | P16T-E | Human | Esophagus | ESCC | 1.52e-18 | 3.80e-01 | 0.1153 |
3300 | DNAJB2 | P17T-E | Human | Esophagus | ESCC | 4.24e-19 | 6.10e-01 | 0.1278 |
3300 | DNAJB2 | P19T-E | Human | Esophagus | ESCC | 3.98e-15 | 7.19e-01 | 0.1662 |
3300 | DNAJB2 | P20T-E | Human | Esophagus | ESCC | 1.15e-20 | 3.75e-01 | 0.1124 |
3300 | DNAJB2 | P21T-E | Human | Esophagus | ESCC | 7.04e-36 | 7.36e-01 | 0.1617 |
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Transcriptomic changes along malignancy continuum. |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:003139612 | Liver | Cirrhotic | regulation of protein ubiquitination | 89/4634 | 210/18723 | 1.40e-08 | 5.30e-07 | 89 |
GO:0030433 | Liver | Cirrhotic | ubiquitin-dependent ERAD pathway | 45/4634 | 85/18723 | 2.19e-08 | 7.75e-07 | 45 |
GO:00365032 | Liver | Cirrhotic | ERAD pathway | 53/4634 | 107/18723 | 2.58e-08 | 8.89e-07 | 53 |
GO:004339312 | Liver | Cirrhotic | regulation of protein binding | 83/4634 | 196/18723 | 4.44e-08 | 1.42e-06 | 83 |
GO:200006012 | Liver | Cirrhotic | positive regulation of ubiquitin-dependent protein catabolic process | 52/4634 | 107/18723 | 7.75e-08 | 2.30e-06 | 52 |
GO:19018005 | Liver | Cirrhotic | positive regulation of proteasomal protein catabolic process | 54/4634 | 114/18723 | 1.30e-07 | 3.57e-06 | 54 |
GO:00324366 | Liver | Cirrhotic | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | 43/4634 | 90/18723 | 1.80e-06 | 3.40e-05 | 43 |
GO:001604911 | Liver | Cirrhotic | cell growth | 160/4634 | 482/18723 | 1.50e-05 | 2.07e-04 | 160 |
GO:00511006 | Liver | Cirrhotic | negative regulation of binding | 63/4634 | 162/18723 | 4.54e-05 | 5.31e-04 | 63 |
GO:00320914 | Liver | Cirrhotic | negative regulation of protein binding | 40/4634 | 94/18723 | 1.14e-04 | 1.14e-03 | 40 |
GO:00327812 | Liver | Cirrhotic | positive regulation of ATPase activity | 16/4634 | 27/18723 | 1.41e-04 | 1.36e-03 | 16 |
GO:00420267 | Liver | Cirrhotic | protein refolding | 14/4634 | 23/18723 | 2.50e-04 | 2.26e-03 | 14 |
GO:00708416 | Liver | Cirrhotic | inclusion body assembly | 14/4634 | 24/18723 | 4.64e-04 | 3.75e-03 | 14 |
GO:000155811 | Liver | Cirrhotic | regulation of cell growth | 132/4634 | 414/18723 | 5.53e-04 | 4.36e-03 | 132 |
GO:00900835 | Liver | Cirrhotic | regulation of inclusion body assembly | 11/4634 | 17/18723 | 5.66e-04 | 4.44e-03 | 11 |
GO:00434623 | Liver | Cirrhotic | regulation of ATPase activity | 21/4634 | 46/18723 | 1.61e-03 | 1.04e-02 | 21 |
GO:1903332 | Liver | Cirrhotic | regulation of protein folding | 8/4634 | 12/18723 | 2.59e-03 | 1.53e-02 | 8 |
GO:00900846 | Liver | Cirrhotic | negative regulation of inclusion body assembly | 7/4634 | 11/18723 | 7.11e-03 | 3.41e-02 | 7 |
GO:001049822 | Liver | HCC | proteasomal protein catabolic process | 351/7958 | 490/18723 | 6.92e-40 | 1.46e-36 | 351 |
GO:004316122 | Liver | HCC | proteasome-mediated ubiquitin-dependent protein catabolic process | 299/7958 | 412/18723 | 7.82e-36 | 8.27e-33 | 299 |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa04141211 | Esophagus | ESCC | Protein processing in endoplasmic reticulum | 147/4205 | 174/8465 | 3.29e-22 | 1.10e-19 | 5.64e-20 | 147 |
hsa04141310 | Esophagus | ESCC | Protein processing in endoplasmic reticulum | 147/4205 | 174/8465 | 3.29e-22 | 1.10e-19 | 5.64e-20 | 147 |
hsa0414114 | Liver | Cirrhotic | Protein processing in endoplasmic reticulum | 114/2530 | 174/8465 | 1.16e-22 | 9.67e-21 | 5.96e-21 | 114 |
hsa0414115 | Liver | Cirrhotic | Protein processing in endoplasmic reticulum | 114/2530 | 174/8465 | 1.16e-22 | 9.67e-21 | 5.96e-21 | 114 |
hsa0414122 | Liver | HCC | Protein processing in endoplasmic reticulum | 146/4020 | 174/8465 | 7.34e-24 | 2.46e-21 | 1.37e-21 | 146 |
hsa0414132 | Liver | HCC | Protein processing in endoplasmic reticulum | 146/4020 | 174/8465 | 7.34e-24 | 2.46e-21 | 1.37e-21 | 146 |
hsa0414130 | Oral cavity | OSCC | Protein processing in endoplasmic reticulum | 143/3704 | 174/8465 | 6.82e-26 | 2.28e-23 | 1.16e-23 | 143 |
hsa04141113 | Oral cavity | OSCC | Protein processing in endoplasmic reticulum | 143/3704 | 174/8465 | 6.82e-26 | 2.28e-23 | 1.16e-23 | 143 |
hsa04141210 | Oral cavity | LP | Protein processing in endoplasmic reticulum | 113/2418 | 174/8465 | 8.74e-24 | 5.82e-22 | 3.76e-22 | 113 |
hsa0414138 | Oral cavity | LP | Protein processing in endoplasmic reticulum | 113/2418 | 174/8465 | 8.74e-24 | 5.82e-22 | 3.76e-22 | 113 |
hsa0414128 | Prostate | BPH | Protein processing in endoplasmic reticulum | 97/1718 | 174/8465 | 2.37e-25 | 1.30e-23 | 8.07e-24 | 97 |
hsa04141112 | Prostate | BPH | Protein processing in endoplasmic reticulum | 97/1718 | 174/8465 | 2.37e-25 | 1.30e-23 | 8.07e-24 | 97 |
hsa0414129 | Prostate | Tumor | Protein processing in endoplasmic reticulum | 99/1791 | 174/8465 | 2.58e-25 | 1.71e-23 | 1.06e-23 | 99 |
hsa0414137 | Prostate | Tumor | Protein processing in endoplasmic reticulum | 99/1791 | 174/8465 | 2.58e-25 | 1.71e-23 | 1.06e-23 | 99 |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
DNAJB2 | SNV | Missense_Mutation | novel | c.694N>T | p.Gly232Trp | p.G232W | P25686 | protein_coding | deleterious(0) | possibly_damaging(0.866) | TCGA-A7-A0DB-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | arimidex | SD |
DNAJB2 | SNV | Missense_Mutation | rs200970147 | c.928N>T | p.Arg310Cys | p.R310C | P25686 | protein_coding | deleterious_low_confidence(0.05) | benign(0.058) | TCGA-AO-A128-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD |
DNAJB2 | insertion | Frame_Shift_Ins | novel | c.369_370insAATTCTT | p.Ser124AsnfsTer90 | p.S124Nfs*90 | P25686 | protein_coding | TCGA-AN-A0FN-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | ||
DNAJB2 | deletion | Frame_Shift_Del | novel | c.773delN | p.Met259TrpfsTer94 | p.M259Wfs*94 | P25686 | protein_coding | TCGA-EW-A2FV-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | docetaxel | SD | ||
DNAJB2 | SNV | Missense_Mutation | rs747378005 | c.184N>T | p.Arg62Trp | p.R62W | P25686 | protein_coding | deleterious(0) | possibly_damaging(0.88) | TCGA-A6-5665-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
DNAJB2 | SNV | Missense_Mutation | rs11559157 | c.200G>A | p.Arg67His | p.R67H | P25686 | protein_coding | deleterious(0.02) | benign(0.217) | TCGA-AA-A00N-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
DNAJB2 | SNV | Missense_Mutation | rs11559157 | c.200G>A | p.Arg67His | p.R67H | P25686 | protein_coding | deleterious(0.02) | benign(0.217) | TCGA-AD-6964-01 | Colorectum | colon adenocarcinoma | Male | <65 | III/IV | Chemotherapy | folfox | PD |
DNAJB2 | SNV | Missense_Mutation | c.529C>T | p.Arg177Cys | p.R177C | P25686 | protein_coding | deleterious(0) | possibly_damaging(0.513) | TCGA-D5-6530-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
DNAJB2 | SNV | Missense_Mutation | rs201861589 | c.664N>A | p.Glu222Lys | p.E222K | P25686 | protein_coding | tolerated(0.05) | benign(0.241) | TCGA-WS-AB45-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
DNAJB2 | SNV | Missense_Mutation | novel | c.272N>A | p.Gly91Asp | p.G91D | P25686 | protein_coding | tolerated(0.72) | benign(0.074) | TCGA-A5-A0G1-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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