Tissue | Expression Dynamics | Abbreviation |
Breast | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Breast/CP_pca_on_diff_genes.png) | IDC: Invasive ductal carcinoma |
DCIS: Ductal carcinoma in situ |
Precancer(BRCA1-mut): Precancerous lesion from BRCA1 mutation carriers |
Cervix | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Cervix/CP_pca_on_diff_genes.png) | CC: Cervix cancer |
HSIL_HPV: HPV-infected high-grade squamous intraepithelial lesions |
N_HPV: HPV-infected normal cervix |
Esophagus | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Esophagus/CP_pca_on_diff_genes.png) | ESCC: Esophageal squamous cell carcinoma |
HGIN: High-grade intraepithelial neoplasias |
LGIN: Low-grade intraepithelial neoplasias |
Liver | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Liver/CP_pca_on_diff_genes.png) | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
Lung | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Lung/CP_pca_on_diff_genes.png) | AAH: Atypical adenomatous hyperplasia |
AIS: Adenocarcinoma in situ |
IAC: Invasive lung adenocarcinoma |
MIA: Minimally invasive adenocarcinoma |
Oral Cavity | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/OralCavity/CP_pca_on_diff_genes.png) | EOLP: Erosive Oral lichen planus |
LP: leukoplakia |
NEOLP: Non-erosive oral lichen planus |
OSCC: Oral squamous cell carcinoma |
Prostate | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Prostate/CP_pca_on_diff_genes.png) | BPH: Benign Prostatic Hyperplasia |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:200105621 | Stomach | CSG | positive regulation of cysteine-type endopeptidase activity | 18/1034 | 148/18723 | 1.36e-03 | 1.58e-02 | 18 |
GO:00466852 | Stomach | CSG | response to arsenic-containing substance | 7/1034 | 33/18723 | 1.85e-03 | 1.97e-02 | 7 |
GO:190371521 | Stomach | CSG | regulation of aerobic respiration | 7/1034 | 33/18723 | 1.85e-03 | 1.97e-02 | 7 |
GO:004328021 | Stomach | CSG | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 16/1034 | 129/18723 | 2.00e-03 | 2.08e-02 | 16 |
GO:005197321 | Stomach | CSG | positive regulation of telomerase activity | 7/1034 | 34/18723 | 2.22e-03 | 2.25e-02 | 7 |
GO:200006021 | Stomach | CSG | positive regulation of ubiquitin-dependent protein catabolic process | 14/1034 | 107/18723 | 2.26e-03 | 2.27e-02 | 14 |
GO:00309682 | Stomach | CSG | endoplasmic reticulum unfolded protein response | 11/1034 | 74/18723 | 2.36e-03 | 2.36e-02 | 11 |
GO:00463942 | Stomach | CSG | carboxylic acid biosynthetic process | 30/1034 | 314/18723 | 2.52e-03 | 2.46e-02 | 30 |
GO:00160532 | Stomach | CSG | organic acid biosynthetic process | 30/1034 | 316/18723 | 2.77e-03 | 2.63e-02 | 30 |
GO:200057311 | Stomach | CSG | positive regulation of DNA biosynthetic process | 10/1034 | 66/18723 | 3.18e-03 | 2.92e-02 | 10 |
GO:007020221 | Stomach | CSG | regulation of establishment of protein localization to chromosome | 4/1034 | 12/18723 | 3.20e-03 | 2.92e-02 | 4 |
GO:00900852 | Stomach | CSG | regulation of protein deubiquitination | 4/1034 | 12/18723 | 3.20e-03 | 2.92e-02 | 4 |
GO:190435821 | Stomach | CSG | positive regulation of telomere maintenance via telomere lengthening | 7/1034 | 37/18723 | 3.68e-03 | 3.27e-02 | 7 |
GO:00712432 | Stomach | CSG | cellular response to arsenic-containing substance | 5/1034 | 20/18723 | 3.93e-03 | 3.44e-02 | 5 |
GO:190180011 | Stomach | CSG | positive regulation of proteasomal protein catabolic process | 14/1034 | 114/18723 | 4.07e-03 | 3.52e-02 | 14 |
GO:000700411 | Stomach | CSG | telomere maintenance via telomerase | 10/1034 | 69/18723 | 4.42e-03 | 3.75e-02 | 10 |
GO:004316111 | Stomach | CSG | proteasome-mediated ubiquitin-dependent protein catabolic process | 36/1034 | 412/18723 | 4.49e-03 | 3.79e-02 | 36 |
GO:001083311 | Stomach | CSG | telomere maintenance via telomere lengthening | 11/1034 | 81/18723 | 4.83e-03 | 4.03e-02 | 11 |
GO:002241111 | Stomach | CSG | cellular component disassembly | 38/1034 | 443/18723 | 4.84e-03 | 4.04e-02 | 38 |
GO:004345711 | Stomach | CSG | regulation of cellular respiration | 8/1034 | 49/18723 | 5.04e-03 | 4.13e-02 | 8 |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
CP | SNV | Missense_Mutation | novel | c.1843N>A | p.Gln615Lys | p.Q615K | P00450 | protein_coding | tolerated(0.28) | possibly_damaging(0.521) | TCGA-A2-A25A-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unspecific | Cytoxan | SD |
CP | SNV | Missense_Mutation | | c.204G>T | p.Lys68Asn | p.K68N | P00450 | protein_coding | deleterious(0) | probably_damaging(0.992) | TCGA-A2-A25C-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | taxotere | SD |
CP | SNV | Missense_Mutation | | c.2285A>C | p.Asn762Thr | p.N762T | P00450 | protein_coding | deleterious(0.04) | benign(0.061) | TCGA-A8-A08R-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
CP | SNV | Missense_Mutation | | c.1468N>C | p.Tyr490His | p.Y490H | P00450 | protein_coding | tolerated(0.5) | benign(0.003) | TCGA-AO-A128-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD |
CP | SNV | Missense_Mutation | | c.616G>A | p.Asp206Asn | p.D206N | P00450 | protein_coding | tolerated(0.38) | benign(0.052) | TCGA-C8-A8HQ-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
CP | SNV | Missense_Mutation | | c.2254N>A | p.Glu752Lys | p.E752K | P00450 | protein_coding | deleterious(0.03) | probably_damaging(1) | TCGA-D8-A27G-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
CP | insertion | Nonsense_Mutation | novel | c.208_209insACTCATCGGACCTTTAATAATCTGTAAAAAAGGTACAT | p.Ala70AspfsTer6 | p.A70Dfs*6 | P00450 | protein_coding | | | TCGA-BH-A0BJ-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD |
CP | SNV | Missense_Mutation | novel | c.224A>G | p.Tyr75Cys | p.Y75C | P00450 | protein_coding | deleterious(0) | probably_damaging(0.994) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
CP | SNV | Missense_Mutation | | c.550N>A | p.Asp184Asn | p.D184N | P00450 | protein_coding | tolerated(0.09) | possibly_damaging(0.803) | TCGA-C5-A1MJ-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
CP | SNV | Missense_Mutation | | c.572N>T | p.Ser191Leu | p.S191L | P00450 | protein_coding | deleterious(0) | possibly_damaging(0.88) | TCGA-DR-A0ZM-01 | Cervix | cervical & endocervical cancer | Female | <65 | III/IV | Unspecific | Cisplatin | SD |