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Gene: S100A9 |
Gene summary for S100A9 |
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Gene information | Species | Human | Gene symbol | S100A9 | Gene ID | 6280 |
Gene name | S100 calcium binding protein A9 | |
Gene Alias | 60B8AG | |
Cytomap | 1q21.3 | |
Gene Type | protein-coding | GO ID | GO:0001558 | UniProtAcc | P06702 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
6280 | S100A9 | GSM4909281 | Human | Breast | IDC | 5.40e-04 | -5.69e-01 | 0.21 |
6280 | S100A9 | GSM4909282 | Human | Breast | IDC | 1.96e-25 | 3.92e-01 | -0.0288 |
6280 | S100A9 | GSM4909285 | Human | Breast | IDC | 8.51e-06 | -6.47e-01 | 0.21 |
6280 | S100A9 | GSM4909286 | Human | Breast | IDC | 2.52e-23 | -8.00e-01 | 0.1081 |
6280 | S100A9 | GSM4909290 | Human | Breast | IDC | 1.38e-13 | 4.63e-01 | 0.2096 |
6280 | S100A9 | GSM4909291 | Human | Breast | IDC | 1.08e-04 | -7.08e-01 | 0.1753 |
6280 | S100A9 | GSM4909293 | Human | Breast | IDC | 9.60e-13 | -7.23e-01 | 0.1581 |
6280 | S100A9 | GSM4909296 | Human | Breast | IDC | 1.55e-04 | -6.09e-01 | 0.1524 |
6280 | S100A9 | GSM4909297 | Human | Breast | IDC | 4.02e-21 | -7.75e-01 | 0.1517 |
6280 | S100A9 | GSM4909298 | Human | Breast | IDC | 1.18e-18 | -7.87e-01 | 0.1551 |
6280 | S100A9 | GSM4909300 | Human | Breast | IDC | 1.06e-07 | 4.86e-01 | 0.0334 |
6280 | S100A9 | GSM4909301 | Human | Breast | IDC | 9.03e-20 | -7.93e-01 | 0.1577 |
6280 | S100A9 | GSM4909302 | Human | Breast | IDC | 1.25e-07 | -6.66e-01 | 0.1545 |
6280 | S100A9 | GSM4909303 | Human | Breast | IDC | 2.40e-02 | -7.57e-01 | 0.0438 |
6280 | S100A9 | GSM4909304 | Human | Breast | IDC | 3.61e-19 | -7.81e-01 | 0.1636 |
6280 | S100A9 | GSM4909305 | Human | Breast | IDC | 3.13e-02 | -4.63e-01 | 0.0436 |
6280 | S100A9 | GSM4909306 | Human | Breast | IDC | 2.82e-10 | -6.82e-01 | 0.1564 |
6280 | S100A9 | GSM4909307 | Human | Breast | IDC | 5.68e-14 | -7.42e-01 | 0.1569 |
6280 | S100A9 | GSM4909308 | Human | Breast | IDC | 1.63e-15 | -7.96e-01 | 0.158 |
6280 | S100A9 | GSM4909311 | Human | Breast | IDC | 2.20e-11 | -6.85e-01 | 0.1534 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:200105623 | Oral cavity | EOLP | positive regulation of cysteine-type endopeptidase activity | 39/2218 | 148/18723 | 9.60e-07 | 2.38e-05 | 39 |
GO:003210314 | Oral cavity | EOLP | positive regulation of response to external stimulus | 84/2218 | 427/18723 | 1.72e-06 | 3.99e-05 | 84 |
GO:001097515 | Oral cavity | EOLP | regulation of neuron projection development | 86/2218 | 445/18723 | 2.75e-06 | 6.05e-05 | 86 |
GO:005090014 | Oral cavity | EOLP | leukocyte migration | 74/2218 | 369/18723 | 3.40e-06 | 7.35e-05 | 74 |
GO:004328023 | Oral cavity | EOLP | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 33/2218 | 129/18723 | 1.26e-05 | 2.15e-04 | 33 |
GO:000155823 | Oral cavity | EOLP | regulation of cell growth | 78/2218 | 414/18723 | 2.02e-05 | 3.19e-04 | 78 |
GO:005109021 | Oral cavity | EOLP | regulation of DNA-binding transcription factor activity | 80/2218 | 440/18723 | 5.77e-05 | 7.31e-04 | 80 |
GO:003059514 | Oral cavity | EOLP | leukocyte chemotaxis | 48/2218 | 230/18723 | 6.07e-05 | 7.64e-04 | 48 |
GO:003249623 | Oral cavity | EOLP | response to lipopolysaccharide | 65/2218 | 343/18723 | 8.02e-05 | 9.65e-04 | 65 |
GO:006032614 | Oral cavity | EOLP | cell chemotaxis | 60/2218 | 310/18723 | 8.04e-05 | 9.66e-04 | 60 |
GO:000223724 | Oral cavity | EOLP | response to molecule of bacterial origin | 67/2218 | 363/18723 | 1.42e-04 | 1.53e-03 | 67 |
GO:009752910 | Oral cavity | EOLP | myeloid leukocyte migration | 45/2218 | 220/18723 | 1.65e-04 | 1.74e-03 | 45 |
GO:004592716 | Oral cavity | EOLP | positive regulation of growth | 51/2218 | 259/18723 | 1.72e-04 | 1.79e-03 | 51 |
GO:003030715 | Oral cavity | EOLP | positive regulation of cell growth | 36/2218 | 166/18723 | 2.19e-04 | 2.18e-03 | 36 |
GO:003134912 | Oral cavity | EOLP | positive regulation of defense response | 53/2218 | 278/18723 | 3.00e-04 | 2.81e-03 | 53 |
GO:001097621 | Oral cavity | EOLP | positive regulation of neuron projection development | 35/2218 | 163/18723 | 3.25e-04 | 3.03e-03 | 35 |
GO:009886925 | Oral cavity | EOLP | cellular oxidant detoxification | 24/2218 | 101/18723 | 5.97e-04 | 5.02e-03 | 24 |
GO:00975309 | Oral cavity | EOLP | granulocyte migration | 31/2218 | 148/18723 | 1.07e-03 | 7.83e-03 | 31 |
GO:00507274 | Oral cavity | EOLP | regulation of inflammatory response | 66/2218 | 386/18723 | 1.34e-03 | 9.33e-03 | 66 |
GO:007162113 | Oral cavity | EOLP | granulocyte chemotaxis | 27/2218 | 125/18723 | 1.35e-03 | 9.36e-03 | 27 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa0465716 | Breast | Precancer | IL-17 signaling pathway | 20/684 | 94/8465 | 4.74e-05 | 4.54e-04 | 3.48e-04 | 20 |
hsa0465717 | Breast | Precancer | IL-17 signaling pathway | 20/684 | 94/8465 | 4.74e-05 | 4.54e-04 | 3.48e-04 | 20 |
hsa0465721 | Breast | IDC | IL-17 signaling pathway | 18/867 | 94/8465 | 6.39e-03 | 3.30e-02 | 2.47e-02 | 18 |
hsa0465731 | Breast | IDC | IL-17 signaling pathway | 18/867 | 94/8465 | 6.39e-03 | 3.30e-02 | 2.47e-02 | 18 |
hsa0465741 | Breast | DCIS | IL-17 signaling pathway | 18/846 | 94/8465 | 4.95e-03 | 2.67e-02 | 1.96e-02 | 18 |
hsa0465751 | Breast | DCIS | IL-17 signaling pathway | 18/846 | 94/8465 | 4.95e-03 | 2.67e-02 | 1.96e-02 | 18 |
hsa0465718 | Cervix | CC | IL-17 signaling pathway | 31/1267 | 94/8465 | 8.71e-06 | 7.43e-05 | 4.39e-05 | 31 |
hsa0465719 | Cervix | CC | IL-17 signaling pathway | 31/1267 | 94/8465 | 8.71e-06 | 7.43e-05 | 4.39e-05 | 31 |
hsa0465722 | Cervix | HSIL_HPV | IL-17 signaling pathway | 15/459 | 94/8465 | 1.45e-04 | 1.74e-03 | 1.40e-03 | 15 |
hsa0465732 | Cervix | HSIL_HPV | IL-17 signaling pathway | 15/459 | 94/8465 | 1.45e-04 | 1.74e-03 | 1.40e-03 | 15 |
hsa0465742 | Cervix | N_HPV | IL-17 signaling pathway | 16/349 | 94/8465 | 1.20e-06 | 1.64e-05 | 1.28e-05 | 16 |
hsa0465752 | Cervix | N_HPV | IL-17 signaling pathway | 16/349 | 94/8465 | 1.20e-06 | 1.64e-05 | 1.28e-05 | 16 |
hsa0465720 | Endometrium | EEC | IL-17 signaling pathway | 23/1237 | 94/8465 | 7.61e-03 | 3.63e-02 | 2.71e-02 | 23 |
hsa04657110 | Endometrium | EEC | IL-17 signaling pathway | 23/1237 | 94/8465 | 7.61e-03 | 3.63e-02 | 2.71e-02 | 23 |
hsa0465726 | Esophagus | HGIN | IL-17 signaling pathway | 25/1383 | 94/8465 | 7.52e-03 | 4.63e-02 | 3.68e-02 | 25 |
hsa04657113 | Esophagus | HGIN | IL-17 signaling pathway | 25/1383 | 94/8465 | 7.52e-03 | 4.63e-02 | 3.68e-02 | 25 |
hsa0465727 | Esophagus | ESCC | IL-17 signaling pathway | 66/4205 | 94/8465 | 3.93e-05 | 1.75e-04 | 8.99e-05 | 66 |
hsa0465734 | Esophagus | ESCC | IL-17 signaling pathway | 66/4205 | 94/8465 | 3.93e-05 | 1.75e-04 | 8.99e-05 | 66 |
hsa0465724 | Oral cavity | OSCC | IL-17 signaling pathway | 64/3704 | 94/8465 | 1.48e-06 | 7.87e-06 | 4.01e-06 | 64 |
hsa04657112 | Oral cavity | OSCC | IL-17 signaling pathway | 64/3704 | 94/8465 | 1.48e-06 | 7.87e-06 | 4.01e-06 | 64 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
S100A9 | SNV | Missense_Mutation | c.29N>C | p.Arg10Pro | p.R10P | P06702 | protein_coding | tolerated(0.19) | possibly_damaging(0.613) | TCGA-EK-A3GJ-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD | |
S100A9 | SNV | Missense_Mutation | c.17N>T | p.Ser6Leu | p.S6L | P06702 | protein_coding | deleterious(0) | possibly_damaging(0.88) | TCGA-A6-6141-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Chemotherapy | 5-fu | SD | |
S100A9 | SNV | Missense_Mutation | c.17N>T | p.Ser6Leu | p.S6L | P06702 | protein_coding | deleterious(0) | possibly_damaging(0.88) | TCGA-AU-6004-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
S100A9 | SNV | Missense_Mutation | rs142015410 | c.125N>A | p.Arg42Gln | p.R42Q | P06702 | protein_coding | tolerated(0.62) | benign(0) | TCGA-D5-6929-01 | Colorectum | colon adenocarcinoma | Female | <65 | III/IV | Chemotherapy | oxaliplatinum+ | SD |
S100A9 | SNV | Missense_Mutation | rs142015410 | c.125G>A | p.Arg42Gln | p.R42Q | P06702 | protein_coding | tolerated(0.62) | benign(0) | TCGA-F5-6814-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
S100A9 | SNV | Missense_Mutation | rs140601192 | c.28N>T | p.Arg10Cys | p.R10C | P06702 | protein_coding | tolerated(0.25) | benign(0.017) | TCGA-AJ-A3EL-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
S100A9 | SNV | Missense_Mutation | rs147137403 | c.251C>T | p.Ala84Val | p.A84V | P06702 | protein_coding | tolerated(0.19) | benign(0.048) | TCGA-AX-A2HD-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD |
S100A9 | SNV | Missense_Mutation | novel | c.76N>A | p.Leu26Met | p.L26M | P06702 | protein_coding | tolerated(0.25) | benign(0.268) | TCGA-E6-A1LX-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
S100A9 | SNV | Missense_Mutation | novel | c.98A>G | p.Asn33Ser | p.N33S | P06702 | protein_coding | tolerated(1) | benign(0.031) | TCGA-FI-A2D5-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | carboplatinum | PD |
S100A9 | SNV | Missense_Mutation | novel | c.259N>C | p.Thr87Pro | p.T87P | P06702 | protein_coding | tolerated(0.08) | possibly_damaging(0.825) | TCGA-BR-A4J8-01 | Stomach | stomach adenocarcinoma | Female | >=65 | III/IV | Chemotherapy | xeloda | CR |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
6280 | S100A9 | DRUGGABLE GENOME, KINASE, ENZYME | Paquinimod | PAQUINIMOD | ||
6280 | S100A9 | DRUGGABLE GENOME, KINASE, ENZYME | Tasquinimod | TASQUINIMOD | 24162378 |
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