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Gene: FERMT2 |
Gene summary for FERMT2 |
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Gene information | Species | Human | Gene symbol | FERMT2 | Gene ID | 10979 |
Gene name | FERM domain containing kindlin 2 | |
Gene Alias | KIND2 | |
Cytomap | 14q22.1 | |
Gene Type | protein-coding | GO ID | GO:0000165 | UniProtAcc | Q96AC1 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
10979 | FERMT2 | P2T-E | Human | Esophagus | ESCC | 1.02e-09 | 1.63e-01 | 0.1177 |
10979 | FERMT2 | P4T-E | Human | Esophagus | ESCC | 2.45e-06 | 4.69e-01 | 0.1323 |
10979 | FERMT2 | P5T-E | Human | Esophagus | ESCC | 7.03e-05 | 2.62e-01 | 0.1327 |
10979 | FERMT2 | P8T-E | Human | Esophagus | ESCC | 6.83e-14 | 2.37e-01 | 0.0889 |
10979 | FERMT2 | P9T-E | Human | Esophagus | ESCC | 2.10e-15 | 3.38e-01 | 0.1131 |
10979 | FERMT2 | P10T-E | Human | Esophagus | ESCC | 4.95e-21 | 4.56e-01 | 0.116 |
10979 | FERMT2 | P11T-E | Human | Esophagus | ESCC | 1.10e-04 | 3.85e-01 | 0.1426 |
10979 | FERMT2 | P12T-E | Human | Esophagus | ESCC | 8.68e-15 | 3.61e-01 | 0.1122 |
10979 | FERMT2 | P16T-E | Human | Esophagus | ESCC | 1.97e-12 | 2.96e-01 | 0.1153 |
10979 | FERMT2 | P19T-E | Human | Esophagus | ESCC | 1.52e-06 | 1.01e+00 | 0.1662 |
10979 | FERMT2 | P20T-E | Human | Esophagus | ESCC | 1.01e-02 | 4.70e-02 | 0.1124 |
10979 | FERMT2 | P21T-E | Human | Esophagus | ESCC | 4.15e-03 | 9.79e-02 | 0.1617 |
10979 | FERMT2 | P22T-E | Human | Esophagus | ESCC | 5.14e-03 | 1.09e-01 | 0.1236 |
10979 | FERMT2 | P23T-E | Human | Esophagus | ESCC | 3.81e-05 | 1.34e-01 | 0.108 |
10979 | FERMT2 | P24T-E | Human | Esophagus | ESCC | 4.09e-16 | 4.75e-01 | 0.1287 |
10979 | FERMT2 | P26T-E | Human | Esophagus | ESCC | 9.45e-09 | 3.55e-01 | 0.1276 |
10979 | FERMT2 | P28T-E | Human | Esophagus | ESCC | 5.50e-18 | 4.03e-01 | 0.1149 |
10979 | FERMT2 | P30T-E | Human | Esophagus | ESCC | 3.29e-11 | 4.68e-01 | 0.137 |
10979 | FERMT2 | P32T-E | Human | Esophagus | ESCC | 4.41e-06 | 3.78e-01 | 0.1666 |
10979 | FERMT2 | P36T-E | Human | Esophagus | ESCC | 5.49e-05 | 2.39e-01 | 0.1187 |
Page: 1 2 3 4 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0051495111 | Thyroid | ATC | positive regulation of cytoskeleton organization | 125/6293 | 226/18723 | 1.39e-11 | 5.08e-10 | 125 |
GO:0007160111 | Thyroid | ATC | cell-matrix adhesion | 128/6293 | 233/18723 | 1.49e-11 | 5.41e-10 | 128 |
GO:190018222 | Thyroid | ATC | positive regulation of protein localization to nucleus | 60/6293 | 87/18723 | 1.63e-11 | 5.88e-10 | 60 |
GO:190290529 | Thyroid | ATC | positive regulation of supramolecular fiber organization | 117/6293 | 209/18723 | 2.19e-11 | 7.80e-10 | 117 |
GO:000717924 | Thyroid | ATC | transforming growth factor beta receptor signaling pathway | 112/6293 | 198/18723 | 2.42e-11 | 8.44e-10 | 112 |
GO:015011627 | Thyroid | ATC | regulation of cell-substrate junction organization | 51/6293 | 71/18723 | 5.01e-11 | 1.63e-09 | 51 |
GO:0048041110 | Thyroid | ATC | focal adhesion assembly | 59/6293 | 87/18723 | 7.05e-11 | 2.23e-09 | 59 |
GO:000836026 | Thyroid | ATC | regulation of cell shape | 91/6293 | 154/18723 | 7.33e-11 | 2.31e-09 | 91 |
GO:003133428 | Thyroid | ATC | positive regulation of protein-containing complex assembly | 127/6293 | 237/18723 | 1.64e-10 | 4.93e-09 | 127 |
GO:0001952110 | Thyroid | ATC | regulation of cell-matrix adhesion | 78/6293 | 128/18723 | 2.09e-10 | 6.15e-09 | 78 |
GO:005189325 | Thyroid | ATC | regulation of focal adhesion assembly | 47/6293 | 66/18723 | 4.64e-10 | 1.25e-08 | 47 |
GO:009010925 | Thyroid | ATC | regulation of cell-substrate junction assembly | 47/6293 | 66/18723 | 4.64e-10 | 1.25e-08 | 47 |
GO:000164932 | Thyroid | ATC | osteoblast differentiation | 122/6293 | 229/18723 | 6.04e-10 | 1.60e-08 | 122 |
GO:007190025 | Thyroid | ATC | regulation of protein serine/threonine kinase activity | 176/6293 | 359/18723 | 8.35e-10 | 2.17e-08 | 176 |
GO:004586026 | Thyroid | ATC | positive regulation of protein kinase activity | 185/6293 | 386/18723 | 3.00e-09 | 7.02e-08 | 185 |
GO:0010811210 | Thyroid | ATC | positive regulation of cell-substrate adhesion | 73/6293 | 123/18723 | 4.12e-09 | 9.37e-08 | 73 |
GO:000717823 | Thyroid | ATC | transmembrane receptor protein serine/threonine kinase signaling pathway | 170/6293 | 355/18723 | 1.40e-08 | 2.87e-07 | 170 |
GO:000183722 | Thyroid | ATC | epithelial to mesenchymal transition | 87/6293 | 157/18723 | 1.50e-08 | 3.06e-07 | 87 |
GO:001076927 | Thyroid | ATC | regulation of cell morphogenesis involved in differentiation | 59/6293 | 96/18723 | 2.08e-08 | 4.05e-07 | 59 |
GO:001072022 | Thyroid | ATC | positive regulation of cell development | 146/6293 | 298/18723 | 2.36e-08 | 4.56e-07 | 146 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
FERMT2 | SNV | Missense_Mutation | novel | c.1513N>T | p.Pro505Ser | p.P505S | Q96AC1 | protein_coding | tolerated(0.31) | benign(0.012) | TCGA-AN-A046-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
FERMT2 | SNV | Missense_Mutation | c.1900N>C | p.Glu634Gln | p.E634Q | Q96AC1 | protein_coding | tolerated(0.64) | possibly_damaging(0.677) | TCGA-C8-A1HF-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
FERMT2 | insertion | Frame_Shift_Ins | novel | c.1909_1910insGGCTTAACCTATATGAACTCTATTTATCATGTCTA | p.Asp637GlyfsTer24 | p.D637Gfs*24 | Q96AC1 | protein_coding | TCGA-AO-A0JB-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | cyclophosphamide | SD | ||
FERMT2 | deletion | Frame_Shift_Del | novel | c.55delN | p.Glu19AsnfsTer2 | p.E19Nfs*2 | Q96AC1 | protein_coding | TCGA-D8-A27V-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | tamoxiphen | SD | ||
FERMT2 | SNV | Missense_Mutation | c.1095T>G | p.Ile365Met | p.I365M | Q96AC1 | protein_coding | tolerated(0.29) | possibly_damaging(0.653) | TCGA-FU-A3HZ-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR | |
FERMT2 | SNV | Missense_Mutation | c.997N>C | p.Glu333Gln | p.E333Q | Q96AC1 | protein_coding | tolerated(0.5) | benign(0.291) | TCGA-IR-A3LA-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR | |
FERMT2 | SNV | Missense_Mutation | c.720A>T | p.Gln240His | p.Q240H | Q96AC1 | protein_coding | deleterious(0.02) | possibly_damaging(0.871) | TCGA-A6-4105-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
FERMT2 | SNV | Missense_Mutation | c.1997N>A | p.Arg666His | p.R666H | Q96AC1 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-AA-3509-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
FERMT2 | SNV | Missense_Mutation | c.1316T>G | p.Phe439Cys | p.F439C | Q96AC1 | protein_coding | deleterious(0) | probably_damaging(0.984) | TCGA-AA-3851-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
FERMT2 | SNV | Missense_Mutation | c.106A>G | p.Thr36Ala | p.T36A | Q96AC1 | protein_coding | tolerated(0.35) | benign(0.108) | TCGA-AA-3977-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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