Tissue | Expression Dynamics | Abbreviation |
Breast | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Breast/AREG_pca_on_diff_genes.png) | IDC: Invasive ductal carcinoma |
DCIS: Ductal carcinoma in situ |
Precancer(BRCA1-mut): Precancerous lesion from BRCA1 mutation carriers |
Cervix | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Cervix/AREG_pca_on_diff_genes.png) | CC: Cervix cancer |
HSIL_HPV: HPV-infected high-grade squamous intraepithelial lesions |
N_HPV: HPV-infected normal cervix |
Colorectum (GSE201348) | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Colorectum/Becker/AREG_pca_on_diff_genes.png) | FAP: Familial adenomatous polyposis |
CRC: Colorectal cancer |
Colorectum (HTA11) | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Colorectum/Chen/AREG_pca_on_diff_genes.png) | AD: Adenomas |
SER: Sessile serrated lesions |
MSI-H: Microsatellite-high colorectal cancer |
MSS: Microsatellite stable colorectal cancer |
Esophagus | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Esophagus/AREG_pca_on_diff_genes.png) | ESCC: Esophageal squamous cell carcinoma |
HGIN: High-grade intraepithelial neoplasias |
LGIN: Low-grade intraepithelial neoplasias |
GC | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/GC/AREG_pca_on_diff_genes.png) | CAG: Chronic atrophic gastritis |
CAG with IM: Chronic atrophic gastritis with intestinal metaplasia |
CSG: Chronic superficial gastritis |
GC: Gastric cancer |
SIM: Severe intestinal metaplasia |
WIM: Wild intestinal metaplasia |
Liver | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Liver/AREG_pca_on_diff_genes.png) | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
Lung | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Lung/AREG_pca_on_diff_genes.png) | AAH: Atypical adenomatous hyperplasia |
AIS: Adenocarcinoma in situ |
IAC: Invasive lung adenocarcinoma |
MIA: Minimally invasive adenocarcinoma |
Oral Cavity | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/OralCavity/AREG_pca_on_diff_genes.png) | EOLP: Erosive Oral lichen planus |
LP: leukoplakia |
NEOLP: Non-erosive oral lichen planus |
OSCC: Oral squamous cell carcinoma |
Prostate | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Prostate/AREG_pca_on_diff_genes.png) | BPH: Benign Prostatic Hyperplasia |
Skin | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Skin/AREG_pca_on_diff_genes.png) | AK: Actinic keratosis |
cSCC: Cutaneous squamous cell carcinoma |
SCCIS:squamous cell carcinoma in situ |
Thyroid | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Thyroid/AREG_pca_on_diff_genes.png) | ATC: Anaplastic thyroid cancer |
HT: Hashimoto's thyroiditis |
PTC: Papillary thyroid cancer |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00513842 | Stomach | CSG | response to glucocorticoid | 24/1034 | 148/18723 | 1.91e-06 | 8.78e-05 | 24 |
GO:004854521 | Stomach | CSG | response to steroid hormone | 40/1034 | 339/18723 | 4.99e-06 | 1.94e-04 | 40 |
GO:000030221 | Stomach | CSG | response to reactive oxygen species | 30/1034 | 222/18723 | 5.30e-06 | 2.03e-04 | 30 |
GO:004254221 | Stomach | CSG | response to hydrogen peroxide | 21/1034 | 146/18723 | 5.27e-05 | 1.35e-03 | 21 |
GO:004873221 | Stomach | CSG | gland development | 43/1034 | 436/18723 | 1.70e-04 | 3.33e-03 | 43 |
GO:00506782 | Stomach | CSG | regulation of epithelial cell proliferation | 38/1034 | 381/18723 | 3.18e-04 | 5.42e-03 | 38 |
GO:00515912 | Stomach | CSG | response to cAMP | 14/1034 | 93/18723 | 5.62e-04 | 8.29e-03 | 14 |
GO:00466832 | Stomach | CSG | response to organophosphorus | 17/1034 | 131/18723 | 8.87e-04 | 1.18e-02 | 17 |
GO:005067321 | Stomach | CSG | epithelial cell proliferation | 40/1034 | 437/18723 | 1.22e-03 | 1.48e-02 | 40 |
GO:00506791 | Stomach | CSG | positive regulation of epithelial cell proliferation | 22/1034 | 207/18723 | 2.51e-03 | 2.46e-02 | 22 |
GO:001083721 | Stomach | CSG | regulation of keratinocyte proliferation | 7/1034 | 35/18723 | 2.65e-03 | 2.55e-02 | 7 |
GO:004343421 | Stomach | CSG | response to peptide hormone | 37/1034 | 414/18723 | 2.75e-03 | 2.62e-02 | 37 |
GO:00140742 | Stomach | CSG | response to purine-containing compound | 17/1034 | 148/18723 | 3.35e-03 | 3.04e-02 | 17 |
GO:0006979113 | Thyroid | PTC | response to oxidative stress | 234/5968 | 446/18723 | 6.97e-20 | 9.77e-18 | 234 |
GO:0000302113 | Thyroid | PTC | response to reactive oxygen species | 121/5968 | 222/18723 | 2.10e-12 | 9.26e-11 | 121 |
GO:0042542113 | Thyroid | PTC | response to hydrogen peroxide | 86/5968 | 146/18723 | 1.39e-11 | 5.60e-10 | 86 |
GO:0043434113 | Thyroid | PTC | response to peptide hormone | 188/5968 | 414/18723 | 4.13e-09 | 1.09e-07 | 188 |
GO:0048545113 | Thyroid | PTC | response to steroid hormone | 158/5968 | 339/18723 | 8.10e-09 | 2.00e-07 | 158 |
GO:0045860111 | Thyroid | PTC | positive regulation of protein kinase activity | 176/5968 | 386/18723 | 8.89e-09 | 2.17e-07 | 176 |
GO:0048732113 | Thyroid | PTC | gland development | 193/5968 | 436/18723 | 2.88e-08 | 6.42e-07 | 193 |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
AREG | SNV | Missense_Mutation | | c.41N>G | p.Ser14Trp | p.S14W | P15514 | protein_coding | tolerated_low_confidence(0.11) | benign(0.003) | TCGA-AR-A24Q-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD |
AREG | SNV | Missense_Mutation | novel | c.474N>T | p.Glu158Asp | p.E158D | P15514 | protein_coding | deleterious(0.03) | benign(0.009) | TCGA-D8-A1JK-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
AREG | insertion | Frame_Shift_Ins | rs757742243 | c.327_328insC | p.Gln112ProfsTer7 | p.Q112Pfs*7 | P15514 | protein_coding | | | TCGA-A2-A0T2-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Chemotherapy | xeloda | PD |
AREG | insertion | Frame_Shift_Ins | rs757742243 | c.334dupC | p.Gln112ProfsTer7 | p.Q112Pfs*7 | P15514 | protein_coding | | | TCGA-AN-A0FY-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
AREG | insertion | Nonsense_Mutation | novel | c.398_399insCTAGTTGACCTTCACTATGTTTCTAATGTTTTGTATTGAATGGG | p.Gly134Ter | p.G134* | P15514 | protein_coding | | | TCGA-B6-A0IN-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | PD |
AREG | deletion | Frame_Shift_Del | | c.398delA | p.Asn133MetfsTer30 | p.N133Mfs*30 | P15514 | protein_coding | | | TCGA-BH-A18G-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
AREG | deletion | Frame_Shift_Del | novel | c.290delN | p.Ile97MetfsTer11 | p.I97Mfs*11 | P15514 | protein_coding | | | TCGA-D8-A27V-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | tamoxiphen | SD |
AREG | SNV | Missense_Mutation | novel | c.236C>T | p.Ala79Val | p.A79V | P15514 | protein_coding | tolerated(0.37) | benign(0.006) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
AREG | SNV | Missense_Mutation | novel | c.405A>C | p.Lys135Asn | p.K135N | P15514 | protein_coding | tolerated(0.07) | probably_damaging(0.998) | TCGA-CA-6718-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | PD |
AREG | SNV | Missense_Mutation | novel | c.671N>T | p.Arg224Ile | p.R224I | P15514 | protein_coding | deleterious(0.04) | possibly_damaging(0.829) | TCGA-AG-A002-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
374 | AREG | CELL SURFACE, GROWTH FACTOR, DRUGGABLE GENOME, DRUG RESISTANCE | | panitumumab | PANITUMUMAB | 23959273 |
374 | AREG | CELL SURFACE, GROWTH FACTOR, DRUGGABLE GENOME, DRUG RESISTANCE | | capecitabine | CAPECITABINE | 25026457 |
374 | AREG | CELL SURFACE, GROWTH FACTOR, DRUGGABLE GENOME, DRUG RESISTANCE | | CETUXIMAB | CETUXIMAB | 23374602 |
374 | AREG | CELL SURFACE, GROWTH FACTOR, DRUGGABLE GENOME, DRUG RESISTANCE | | cetuximab | CETUXIMAB | 23959273 |
374 | AREG | CELL SURFACE, GROWTH FACTOR, DRUGGABLE GENOME, DRUG RESISTANCE | | CRIZOTINIB | CRIZOTINIB | 21791641 |
374 | AREG | CELL SURFACE, GROWTH FACTOR, DRUGGABLE GENOME, DRUG RESISTANCE | | irinotecan | IRINOTECAN | 23959273 |
374 | AREG | CELL SURFACE, GROWTH FACTOR, DRUGGABLE GENOME, DRUG RESISTANCE | | PANITUMUMAB | PANITUMUMAB | 26867820 |
374 | AREG | CELL SURFACE, GROWTH FACTOR, DRUGGABLE GENOME, DRUG RESISTANCE | | radiotherapy | | 25026457 |