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Gene: RESF1 |
Gene summary for RESF1 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | RESF1 | Gene ID | 55196 |
| Gene name | retroelement silencing factor 1 | |
| Gene Alias | C12orf35 | |
| Cytomap | 12p11.21 | |
| Gene Type | protein-coding | GO ID | GO:0006325 | UniProtAcc | Q9HCM1 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 55196 | RESF1 | AEH-subject1 | Human | Endometrium | AEH | 2.45e-51 | 7.32e-01 | -0.3059 |
| 55196 | RESF1 | AEH-subject2 | Human | Endometrium | AEH | 1.77e-23 | 5.19e-01 | -0.2525 |
| 55196 | RESF1 | AEH-subject3 | Human | Endometrium | AEH | 1.92e-21 | 4.60e-01 | -0.2576 |
| 55196 | RESF1 | AEH-subject4 | Human | Endometrium | AEH | 1.16e-26 | 6.25e-01 | -0.2657 |
| 55196 | RESF1 | AEH-subject5 | Human | Endometrium | AEH | 7.70e-42 | 7.09e-01 | -0.2953 |
| 55196 | RESF1 | EEC-subject1 | Human | Endometrium | EEC | 4.77e-29 | 6.01e-01 | -0.2682 |
| 55196 | RESF1 | EEC-subject2 | Human | Endometrium | EEC | 1.36e-43 | 7.04e-01 | -0.2607 |
| 55196 | RESF1 | EEC-subject3 | Human | Endometrium | EEC | 8.71e-07 | 3.60e-01 | -0.2525 |
| 55196 | RESF1 | EEC-subject4 | Human | Endometrium | EEC | 7.64e-34 | 6.11e-01 | -0.2571 |
| 55196 | RESF1 | EEC-subject5 | Human | Endometrium | EEC | 2.82e-42 | 7.04e-01 | -0.249 |
| 55196 | RESF1 | LZE2D | Human | Esophagus | HGIN | 1.57e-04 | 6.32e-01 | 0.0642 |
| 55196 | RESF1 | LZE4T | Human | Esophagus | ESCC | 6.29e-20 | 5.31e-01 | 0.0811 |
| 55196 | RESF1 | LZE5T | Human | Esophagus | ESCC | 1.15e-08 | 5.15e-01 | 0.0514 |
| 55196 | RESF1 | LZE7T | Human | Esophagus | ESCC | 4.27e-18 | 7.24e-01 | 0.0667 |
| 55196 | RESF1 | LZE8T | Human | Esophagus | ESCC | 1.68e-29 | 8.61e-01 | 0.067 |
| 55196 | RESF1 | LZE20T | Human | Esophagus | ESCC | 2.66e-23 | 6.73e-01 | 0.0662 |
| 55196 | RESF1 | LZE21D1 | Human | Esophagus | HGIN | 4.41e-04 | 3.94e-01 | 0.0632 |
| 55196 | RESF1 | LZE24T | Human | Esophagus | ESCC | 6.51e-29 | 5.93e-01 | 0.0596 |
| 55196 | RESF1 | LZE21T | Human | Esophagus | ESCC | 1.16e-05 | 3.22e-01 | 0.0655 |
| 55196 | RESF1 | LZE6T | Human | Esophagus | ESCC | 6.79e-20 | 6.39e-01 | 0.0845 |
| Page: 1 2 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Endometrium |  | AEH: Atypical endometrial hyperplasia |
| EEC: Endometrioid Cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| GC |  | CAG: Chronic atrophic gastritis |
| CAG with IM: Chronic atrophic gastritis with intestinal metaplasia | ||
| CSG: Chronic superficial gastritis | ||
| GC: Gastric cancer | ||
| SIM: Severe intestinal metaplasia | ||
| WIM: Wild intestinal metaplasia |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:00314533 | Esophagus | HGIN | positive regulation of heterochromatin assembly | 6/2587 | 12/18723 | 3.03e-03 | 2.88e-02 | 6 |
| GO:01202633 | Esophagus | HGIN | positive regulation of heterochromatin organization | 6/2587 | 12/18723 | 3.03e-03 | 2.88e-02 | 6 |
| GO:19052691 | Esophagus | HGIN | positive regulation of chromatin organization | 6/2587 | 13/18723 | 4.97e-03 | 4.18e-02 | 6 |
| GO:0016032111 | Esophagus | ESCC | viral process | 301/8552 | 415/18723 | 3.34e-29 | 1.32e-26 | 301 |
| GO:0019058111 | Esophagus | ESCC | viral life cycle | 226/8552 | 317/18723 | 1.17e-20 | 1.76e-18 | 226 |
| GO:003304416 | Esophagus | ESCC | regulation of chromosome organization | 145/8552 | 187/18723 | 3.80e-19 | 4.31e-17 | 145 |
| GO:0019079111 | Esophagus | ESCC | viral genome replication | 102/8552 | 131/18723 | 4.31e-14 | 2.19e-12 | 102 |
| GO:0050792111 | Esophagus | ESCC | regulation of viral process | 119/8552 | 164/18723 | 2.19e-12 | 9.03e-11 | 119 |
| GO:1903900111 | Esophagus | ESCC | regulation of viral life cycle | 106/8552 | 148/18723 | 1.26e-10 | 3.72e-09 | 106 |
| GO:0045069110 | Esophagus | ESCC | regulation of viral genome replication | 67/8552 | 85/18723 | 3.81e-10 | 1.04e-08 | 67 |
| GO:200125219 | Esophagus | ESCC | positive regulation of chromosome organization | 64/8552 | 82/18723 | 1.98e-09 | 4.52e-08 | 64 |
| GO:000632517 | Esophagus | ESCC | chromatin organization | 240/8552 | 409/18723 | 6.52e-08 | 1.14e-06 | 240 |
| GO:00400295 | Esophagus | ESCC | regulation of gene expression, epigenetic | 74/8552 | 105/18723 | 2.24e-07 | 3.42e-06 | 74 |
| GO:004852516 | Esophagus | ESCC | negative regulation of viral process | 66/8552 | 92/18723 | 3.49e-07 | 4.88e-06 | 66 |
| GO:004507114 | Esophagus | ESCC | negative regulation of viral genome replication | 44/8552 | 56/18723 | 4.84e-07 | 6.50e-06 | 44 |
| GO:003969411 | Esophagus | ESCC | viral RNA genome replication | 27/8552 | 35/18723 | 1.48e-04 | 9.88e-04 | 27 |
| GO:00708281 | Esophagus | ESCC | heterochromatin organization | 31/8552 | 46/18723 | 2.42e-03 | 1.06e-02 | 31 |
| GO:0045814 | Esophagus | ESCC | negative regulation of gene expression, epigenetic | 32/8552 | 50/18723 | 6.90e-03 | 2.52e-02 | 32 |
| GO:0039692 | Esophagus | ESCC | single stranded viral RNA replication via double stranded DNA intermediate | 15/8552 | 20/18723 | 7.60e-03 | 2.71e-02 | 15 |
| GO:00609686 | Esophagus | ESCC | regulation of gene silencing | 48/8552 | 81/18723 | 9.54e-03 | 3.30e-02 | 48 |
| Page: 1 2 3 4 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| Page: 1 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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