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Gene: NRARP |
Gene summary for NRARP |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | NRARP | Gene ID | 441478 |
| Gene name | NOTCH regulated ankyrin repeat protein | |
| Gene Alias | NRARP | |
| Cytomap | 9q34.3 | |
| Gene Type | protein-coding | GO ID | GO:0000122 | UniProtAcc | Q7Z6K4 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 441478 | NRARP | CA_HPV_1 | Human | Cervix | CC | 4.59e-03 | -1.79e-01 | 0.0264 |
| 441478 | NRARP | sample1 | Human | Cervix | CC | 1.69e-11 | 6.83e-01 | 0.0959 |
| 441478 | NRARP | sample3 | Human | Cervix | CC | 3.84e-24 | 5.33e-01 | 0.1387 |
| 441478 | NRARP | T1 | Human | Cervix | CC | 2.24e-28 | 8.36e-01 | 0.0918 |
| 441478 | NRARP | T2 | Human | Cervix | CC | 6.87e-04 | 4.89e-01 | 0.0709 |
| 441478 | NRARP | T3 | Human | Cervix | CC | 1.67e-21 | 5.83e-01 | 0.1389 |
| 441478 | NRARP | LZE4T | Human | Esophagus | ESCC | 3.57e-10 | 4.66e-01 | 0.0811 |
| 441478 | NRARP | LZE7T | Human | Esophagus | ESCC | 3.19e-05 | 5.23e-01 | 0.0667 |
| 441478 | NRARP | LZE20T | Human | Esophagus | ESCC | 1.33e-04 | 3.59e-01 | 0.0662 |
| 441478 | NRARP | LZE24T | Human | Esophagus | ESCC | 1.00e-03 | 2.96e-01 | 0.0596 |
| 441478 | NRARP | LZE21T | Human | Esophagus | ESCC | 1.24e-13 | 1.45e+00 | 0.0655 |
| 441478 | NRARP | P1T-E | Human | Esophagus | ESCC | 4.61e-05 | 4.39e-01 | 0.0875 |
| 441478 | NRARP | P2T-E | Human | Esophagus | ESCC | 4.42e-14 | 3.06e-01 | 0.1177 |
| 441478 | NRARP | P4T-E | Human | Esophagus | ESCC | 5.15e-25 | 8.38e-01 | 0.1323 |
| 441478 | NRARP | P5T-E | Human | Esophagus | ESCC | 4.92e-19 | 4.26e-01 | 0.1327 |
| 441478 | NRARP | P8T-E | Human | Esophagus | ESCC | 3.07e-04 | 2.00e-01 | 0.0889 |
| 441478 | NRARP | P9T-E | Human | Esophagus | ESCC | 1.50e-12 | 5.02e-01 | 0.1131 |
| 441478 | NRARP | P10T-E | Human | Esophagus | ESCC | 1.03e-09 | 9.90e-02 | 0.116 |
| 441478 | NRARP | P11T-E | Human | Esophagus | ESCC | 4.68e-04 | 3.35e-01 | 0.1426 |
| 441478 | NRARP | P12T-E | Human | Esophagus | ESCC | 3.69e-04 | 1.50e-01 | 0.1122 |
| Page: 1 2 3 4 5 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Cervix |  | CC: Cervix cancer |
| HSIL_HPV: HPV-infected high-grade squamous intraepithelial lesions | ||
| N_HPV: HPV-infected normal cervix | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Prostate |  | BPH: Benign Prostatic Hyperplasia |
| Skin |  | AK: Actinic keratosis |
| cSCC: Cutaneous squamous cell carcinoma | ||
| SCCIS:squamous cell carcinoma in situ |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:003011117 | Esophagus | ESCC | regulation of Wnt signaling pathway | 194/8552 | 328/18723 | 5.39e-07 | 7.14e-06 | 194 |
| GO:006007016 | Esophagus | ESCC | canonical Wnt signaling pathway | 180/8552 | 303/18723 | 9.15e-07 | 1.17e-05 | 180 |
| GO:006082817 | Esophagus | ESCC | regulation of canonical Wnt signaling pathway | 153/8552 | 253/18723 | 1.38e-06 | 1.67e-05 | 153 |
| GO:006056210 | Esophagus | ESCC | epithelial tube morphogenesis | 187/8552 | 325/18723 | 9.95e-06 | 9.44e-05 | 187 |
| GO:00072197 | Esophagus | ESCC | Notch signaling pathway | 106/8552 | 172/18723 | 1.74e-05 | 1.55e-04 | 106 |
| GO:009026316 | Esophagus | ESCC | positive regulation of canonical Wnt signaling pathway | 69/8552 | 106/18723 | 4.22e-05 | 3.39e-04 | 69 |
| GO:003017716 | Esophagus | ESCC | positive regulation of Wnt signaling pathway | 87/8552 | 140/18723 | 6.18e-05 | 4.73e-04 | 87 |
| GO:0045746 | Esophagus | ESCC | negative regulation of Notch signaling pathway | 28/8552 | 36/18723 | 8.62e-05 | 6.22e-04 | 28 |
| GO:005067318 | Esophagus | ESCC | epithelial cell proliferation | 238/8552 | 437/18723 | 1.19e-04 | 8.20e-04 | 238 |
| GO:1903706110 | Esophagus | ESCC | regulation of hemopoiesis | 201/8552 | 367/18723 | 2.60e-04 | 1.58e-03 | 201 |
| GO:005067817 | Esophagus | ESCC | regulation of epithelial cell proliferation | 206/8552 | 381/18723 | 5.51e-04 | 3.02e-03 | 206 |
| GO:002240720 | Esophagus | ESCC | regulation of cell-cell adhesion | 239/8552 | 448/18723 | 5.88e-04 | 3.19e-03 | 239 |
| GO:000268316 | Esophagus | ESCC | negative regulation of immune system process | 231/8552 | 434/18723 | 8.48e-04 | 4.36e-03 | 231 |
| GO:00085935 | Esophagus | ESCC | regulation of Notch signaling pathway | 59/8552 | 95/18723 | 9.12e-04 | 4.65e-03 | 59 |
| GO:004211018 | Esophagus | ESCC | T cell activation | 256/8552 | 487/18723 | 1.18e-03 | 5.87e-03 | 256 |
| GO:19031317 | Esophagus | ESCC | mononuclear cell differentiation | 226/8552 | 426/18723 | 1.20e-03 | 5.88e-03 | 226 |
| GO:190210510 | Esophagus | ESCC | regulation of leukocyte differentiation | 152/8552 | 279/18723 | 1.82e-03 | 8.35e-03 | 152 |
| GO:00302176 | Esophagus | ESCC | T cell differentiation | 137/8552 | 257/18723 | 8.09e-03 | 2.87e-02 | 137 |
| GO:000715918 | Esophagus | ESCC | leukocyte cell-cell adhesion | 192/8552 | 371/18723 | 1.03e-02 | 3.51e-02 | 192 |
| GO:00017639 | Esophagus | ESCC | morphogenesis of a branching structure | 106/8552 | 196/18723 | 1.08e-02 | 3.66e-02 | 106 |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa04330 | Cervix | CC | Notch signaling pathway | 17/1267 | 62/8465 | 7.99e-03 | 2.56e-02 | 1.51e-02 | 17 |
| hsa043301 | Cervix | CC | Notch signaling pathway | 17/1267 | 62/8465 | 7.99e-03 | 2.56e-02 | 1.51e-02 | 17 |
| hsa043306 | Esophagus | ESCC | Notch signaling pathway | 42/4205 | 62/8465 | 2.97e-03 | 7.97e-03 | 4.08e-03 | 42 |
| hsa0433013 | Esophagus | ESCC | Notch signaling pathway | 42/4205 | 62/8465 | 2.97e-03 | 7.97e-03 | 4.08e-03 | 42 |
| hsa0433021 | Oral cavity | NEOLP | Notch signaling pathway | 21/1112 | 62/8465 | 2.23e-05 | 1.87e-04 | 1.18e-04 | 21 |
| hsa0433031 | Oral cavity | NEOLP | Notch signaling pathway | 21/1112 | 62/8465 | 2.23e-05 | 1.87e-04 | 1.18e-04 | 21 |
| hsa043304 | Prostate | BPH | Notch signaling pathway | 21/1718 | 62/8465 | 8.53e-03 | 2.68e-02 | 1.66e-02 | 21 |
| hsa0433011 | Prostate | BPH | Notch signaling pathway | 21/1718 | 62/8465 | 8.53e-03 | 2.68e-02 | 1.66e-02 | 21 |
| hsa043302 | Prostate | Tumor | Notch signaling pathway | 22/1791 | 62/8465 | 6.45e-03 | 2.16e-02 | 1.34e-02 | 22 |
| hsa043303 | Prostate | Tumor | Notch signaling pathway | 22/1791 | 62/8465 | 6.45e-03 | 2.16e-02 | 1.34e-02 | 22 |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| NRARP | SNV | Missense_Mutation | novel | c.130N>A | p.Val44Met | p.V44M | Q7Z6K4 | protein_coding | deleterious(0.01) | probably_damaging(0.984) | TCGA-5L-AAT1-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Hormone Therapy | letrozol | SD |
| NRARP | insertion | Frame_Shift_Ins | novel | c.10dupG | p.Ala4GlyfsTer209 | p.A4Gfs*209 | Q7Z6K4 | protein_coding | TCGA-AC-A8OR-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
| NRARP | SNV | Missense_Mutation | c.155N>C | p.Gln52Pro | p.Q52P | Q7Z6K4 | protein_coding | deleterious(0.03) | benign(0.021) | TCGA-WL-A834-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | paclitaxel | SD | |
| NRARP | SNV | Missense_Mutation | c.305N>G | p.Tyr102Cys | p.Y102C | Q7Z6K4 | protein_coding | deleterious(0) | probably_damaging(0.994) | TCGA-A6-3809-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
| NRARP | SNV | Missense_Mutation | novel | c.233G>T | p.Arg78Leu | p.R78L | Q7Z6K4 | protein_coding | deleterious(0.03) | benign(0.19) | TCGA-CA-6717-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Chemotherapy | oxaliplatin | CR |
| NRARP | SNV | Missense_Mutation | c.92N>G | p.Gln31Arg | p.Q31R | Q7Z6K4 | protein_coding | tolerated(0.54) | benign(0.02) | TCGA-DM-A1HB-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Unknown | Unknown | SD | |
| NRARP | SNV | Missense_Mutation | novel | c.307N>A | p.Leu103Ile | p.L103I | Q7Z6K4 | protein_coding | deleterious(0) | probably_damaging(0.987) | TCGA-AX-A2HC-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | paclitaxel | PD |
| NRARP | SNV | Missense_Mutation | novel | c.326N>G | p.Tyr109Cys | p.Y109C | Q7Z6K4 | protein_coding | tolerated(0.05) | probably_damaging(0.97) | TCGA-FI-A2D0-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
| NRARP | SNV | Missense_Mutation | novel | c.170A>G | p.Gln57Arg | p.Q57R | Q7Z6K4 | protein_coding | tolerated(0.05) | possibly_damaging(0.757) | TCGA-2Y-A9GV-01 | Liver | liver hepatocellular carcinoma | Female | <65 | I/II | Targeted Molecular therapy | sorafenib | PD |
| NRARP | SNV | Missense_Mutation | c.247G>A | p.Asp83Asn | p.D83N | Q7Z6K4 | protein_coding | tolerated(0.11) | benign(0.062) | TCGA-22-5491-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
| Page: 1 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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