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Gene: IGF1 |
Gene summary for IGF1 |
Gene summary. |
Gene information | Species | Human | Gene symbol | IGF1 | Gene ID | 3479 |
Gene name | insulin like growth factor 1 | |
Gene Alias | IGF | |
Cytomap | 12q23.2 | |
Gene Type | protein-coding | GO ID | GO:0000003 | UniProtAcc | P05019 |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
3479 | IGF1 | AEH-subject1 | Human | Endometrium | AEH | 1.18e-60 | -1.23e+00 | -0.3059 |
3479 | IGF1 | AEH-subject2 | Human | Endometrium | AEH | 9.46e-51 | -1.18e+00 | -0.2525 |
3479 | IGF1 | AEH-subject3 | Human | Endometrium | AEH | 3.68e-41 | -1.06e+00 | -0.2576 |
3479 | IGF1 | AEH-subject4 | Human | Endometrium | AEH | 3.33e-12 | -6.66e-01 | -0.2657 |
3479 | IGF1 | AEH-subject5 | Human | Endometrium | AEH | 1.62e-50 | -1.16e+00 | -0.2953 |
3479 | IGF1 | EEC-subject1 | Human | Endometrium | EEC | 2.77e-55 | -1.19e+00 | -0.2682 |
3479 | IGF1 | EEC-subject2 | Human | Endometrium | EEC | 6.74e-64 | -1.24e+00 | -0.2607 |
3479 | IGF1 | EEC-subject3 | Human | Endometrium | EEC | 1.51e-53 | -1.18e+00 | -0.2525 |
3479 | IGF1 | EEC-subject4 | Human | Endometrium | EEC | 4.25e-58 | -1.18e+00 | -0.2571 |
3479 | IGF1 | EEC-subject5 | Human | Endometrium | EEC | 1.50e-34 | -9.40e-01 | -0.249 |
3479 | IGF1 | GSM5276934 | Human | Endometrium | EEC | 1.47e-27 | -8.51e-01 | -0.0913 |
3479 | IGF1 | GSM5276935 | Human | Endometrium | EEC | 3.28e-58 | -1.18e+00 | -0.123 |
3479 | IGF1 | GSM5276937 | Human | Endometrium | EEC | 2.94e-20 | -6.54e-01 | -0.0897 |
3479 | IGF1 | GSM6177620_NYU_UCEC1_lib1_lib1 | Human | Endometrium | EEC | 2.29e-27 | -8.63e-01 | -0.1869 |
3479 | IGF1 | GSM6177620_NYU_UCEC1_lib2_lib2 | Human | Endometrium | EEC | 6.41e-26 | -8.49e-01 | -0.1875 |
3479 | IGF1 | GSM6177620_NYU_UCEC1_lib3_lib3 | Human | Endometrium | EEC | 8.29e-34 | -9.11e-01 | -0.1883 |
3479 | IGF1 | GSM6177621_NYU_UCEC2_lib1_lib1 | Human | Endometrium | EEC | 3.00e-45 | -1.08e+00 | -0.1934 |
3479 | IGF1 | GSM6177622_NYU_UCEC3_lib1_lib1 | Human | Endometrium | EEC | 3.66e-67 | -1.24e+00 | -0.1917 |
3479 | IGF1 | GSM6177622_NYU_UCEC3_lib2_lib2 | Human | Endometrium | EEC | 6.20e-63 | -1.24e+00 | -0.1916 |
3479 | IGF1 | GSM6177623_NYU_UCEC3_Vis | Human | Endometrium | EEC | 5.35e-48 | -1.15e+00 | -0.1269 |
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Transcriptomic changes along malignancy continuum. |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:1904951111 | Esophagus | ESCC | positive regulation of establishment of protein localization | 216/8552 | 319/18723 | 1.01e-15 | 6.86e-14 | 216 |
GO:2001234111 | Esophagus | ESCC | negative regulation of apoptotic signaling pathway | 161/8552 | 224/18723 | 1.24e-15 | 8.09e-14 | 161 |
GO:0050821111 | Esophagus | ESCC | protein stabilization | 140/8552 | 191/18723 | 6.50e-15 | 3.61e-13 | 140 |
GO:0051222111 | Esophagus | ESCC | positive regulation of protein transport | 204/8552 | 303/18723 | 1.56e-14 | 8.38e-13 | 204 |
GO:0046034111 | Esophagus | ESCC | ATP metabolic process | 189/8552 | 277/18723 | 1.99e-14 | 1.04e-12 | 189 |
GO:00482853 | Esophagus | ESCC | organelle fission | 301/8552 | 488/18723 | 4.64e-13 | 2.12e-11 | 301 |
GO:0010821110 | Esophagus | ESCC | regulation of mitochondrion organization | 107/8552 | 144/18723 | 2.31e-12 | 9.41e-11 | 107 |
GO:2001236111 | Esophagus | ESCC | regulation of extrinsic apoptotic signaling pathway | 111/8552 | 151/18723 | 2.97e-12 | 1.18e-10 | 111 |
GO:00002802 | Esophagus | ESCC | nuclear division | 270/8552 | 439/18723 | 1.17e-11 | 4.24e-10 | 270 |
GO:0008637110 | Esophagus | ESCC | apoptotic mitochondrial changes | 83/8552 | 107/18723 | 1.43e-11 | 5.08e-10 | 83 |
GO:0051099111 | Esophagus | ESCC | positive regulation of binding | 122/8552 | 173/18723 | 2.79e-11 | 9.45e-10 | 122 |
GO:003298416 | Esophagus | ESCC | protein-containing complex disassembly | 151/8552 | 224/18723 | 3.45e-11 | 1.15e-09 | 151 |
GO:0016049110 | Esophagus | ESCC | cell growth | 289/8552 | 482/18723 | 1.29e-10 | 3.77e-09 | 289 |
GO:0010639110 | Esophagus | ESCC | negative regulation of organelle organization | 215/8552 | 348/18723 | 8.20e-10 | 2.01e-08 | 215 |
GO:004578710 | Esophagus | ESCC | positive regulation of cell cycle | 196/8552 | 313/18723 | 9.27e-10 | 2.24e-08 | 196 |
GO:000155819 | Esophagus | ESCC | regulation of cell growth | 248/8552 | 414/18723 | 2.97e-09 | 6.45e-08 | 248 |
GO:0051101111 | Esophagus | ESCC | regulation of DNA binding | 84/8552 | 118/18723 | 1.64e-08 | 3.21e-07 | 84 |
GO:0006753110 | Esophagus | ESCC | nucleoside phosphate metabolic process | 288/8552 | 497/18723 | 1.80e-08 | 3.50e-07 | 288 |
GO:0019693111 | Esophagus | ESCC | ribose phosphate metabolic process | 234/8552 | 396/18723 | 4.24e-08 | 7.76e-07 | 234 |
GO:0009117111 | Esophagus | ESCC | nucleotide metabolic process | 282/8552 | 489/18723 | 4.70e-08 | 8.50e-07 | 282 |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa0451015 | Endometrium | AEH | Focal adhesion | 58/1197 | 203/8465 | 4.99e-08 | 7.37e-07 | 5.39e-07 | 58 |
hsa0520518 | Endometrium | AEH | Proteoglycans in cancer | 53/1197 | 205/8465 | 5.43e-06 | 6.53e-05 | 4.78e-05 | 53 |
hsa0401514 | Endometrium | AEH | Rap1 signaling pathway | 49/1197 | 210/8465 | 2.03e-04 | 1.78e-03 | 1.30e-03 | 49 |
hsa0406620 | Endometrium | AEH | HIF-1 signaling pathway | 29/1197 | 109/8465 | 4.23e-04 | 3.11e-03 | 2.27e-03 | 29 |
hsa052158 | Endometrium | AEH | Prostate cancer | 25/1197 | 97/8465 | 1.68e-03 | 1.01e-02 | 7.39e-03 | 25 |
hsa0451016 | Endometrium | AEH | Focal adhesion | 58/1197 | 203/8465 | 4.99e-08 | 7.37e-07 | 5.39e-07 | 58 |
hsa0520519 | Endometrium | AEH | Proteoglycans in cancer | 53/1197 | 205/8465 | 5.43e-06 | 6.53e-05 | 4.78e-05 | 53 |
hsa0401515 | Endometrium | AEH | Rap1 signaling pathway | 49/1197 | 210/8465 | 2.03e-04 | 1.78e-03 | 1.30e-03 | 49 |
hsa04066110 | Endometrium | AEH | HIF-1 signaling pathway | 29/1197 | 109/8465 | 4.23e-04 | 3.11e-03 | 2.27e-03 | 29 |
hsa0521513 | Endometrium | AEH | Prostate cancer | 25/1197 | 97/8465 | 1.68e-03 | 1.01e-02 | 7.39e-03 | 25 |
hsa0451024 | Endometrium | EEC | Focal adhesion | 58/1237 | 203/8465 | 1.61e-07 | 2.30e-06 | 1.71e-06 | 58 |
hsa0520524 | Endometrium | EEC | Proteoglycans in cancer | 52/1237 | 205/8465 | 3.01e-05 | 3.19e-04 | 2.38e-04 | 52 |
hsa0401522 | Endometrium | EEC | Rap1 signaling pathway | 49/1237 | 210/8465 | 4.45e-04 | 3.47e-03 | 2.59e-03 | 49 |
hsa0406624 | Endometrium | EEC | HIF-1 signaling pathway | 29/1237 | 109/8465 | 7.33e-04 | 5.13e-03 | 3.82e-03 | 29 |
hsa0521522 | Endometrium | EEC | Prostate cancer | 25/1237 | 97/8465 | 2.66e-03 | 1.56e-02 | 1.16e-02 | 25 |
hsa0451034 | Endometrium | EEC | Focal adhesion | 58/1237 | 203/8465 | 1.61e-07 | 2.30e-06 | 1.71e-06 | 58 |
hsa0520534 | Endometrium | EEC | Proteoglycans in cancer | 52/1237 | 205/8465 | 3.01e-05 | 3.19e-04 | 2.38e-04 | 52 |
hsa0401532 | Endometrium | EEC | Rap1 signaling pathway | 49/1237 | 210/8465 | 4.45e-04 | 3.47e-03 | 2.59e-03 | 49 |
hsa0406634 | Endometrium | EEC | HIF-1 signaling pathway | 29/1237 | 109/8465 | 7.33e-04 | 5.13e-03 | 3.82e-03 | 29 |
hsa0521532 | Endometrium | EEC | Prostate cancer | 25/1237 | 97/8465 | 2.66e-03 | 1.56e-02 | 1.16e-02 | 25 |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
IGF1 | IGF1R | IGF1_IGF1R | IGF | Breast | ADJ |
IGF1 | IGF1R | IGF1_IGF1R | IGF | Breast | DCIS |
IGF1 | ITGA6_ITGB4 | IGF1_ITGA6_ITGB4 | IGF | Breast | DCIS |
IGF1 | IGF1R | IGF1_IGF1R | IGF | Cervix | ADJ |
IGF1 | ITGA6_ITGB4 | IGF1_ITGA6_ITGB4 | IGF | Cervix | ADJ |
IGF1 | IGF1R | IGF1_IGF1R | IGF | Cervix | CC |
IGF1 | ITGA6_ITGB4 | IGF1_ITGA6_ITGB4 | IGF | Cervix | CC |
IGF1 | IGF1R | IGF1_IGF1R | IGF | Cervix | Healthy |
IGF1 | ITGA6_ITGB4 | IGF1_ITGA6_ITGB4 | IGF | Cervix | Healthy |
IGF1 | IGF1R | IGF1_IGF1R | IGF | Cervix | Precancer |
IGF1 | ITGA6_ITGB4 | IGF1_ITGA6_ITGB4 | IGF | Cervix | Precancer |
IGF1 | IGF1R | IGF1_IGF1R | IGF | CRC | ADJ |
IGF1 | ITGA6_ITGB4 | IGF1_ITGA6_ITGB4 | IGF | CRC | ADJ |
IGF1 | IGF1R | IGF1_IGF1R | IGF | CRC | CRC |
IGF1 | ITGA6_ITGB4 | IGF1_ITGA6_ITGB4 | IGF | CRC | CRC |
IGF1 | IGF1R | IGF1_IGF1R | IGF | CRC | FAP |
IGF1 | ITGA6_ITGB4 | IGF1_ITGA6_ITGB4 | IGF | CRC | FAP |
IGF2 | IGF1R | IGF2_IGF1R | IGF | CRC | MSS |
IGF1 | IGF1R | IGF1_IGF1R | IGF | Endometrium | ADJ |
IGF1 | IGF1R | IGF1_IGF1R | IGF | Endometrium | AEH |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
IGF1 | SNV | Missense_Mutation | novel | c.71N>C | p.Met24Thr | p.M24T | P05019 | protein_coding | deleterious(0) | benign(0.024) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
IGF1 | SNV | Missense_Mutation | rs367603396 | c.470N>A | p.Arg157His | p.R157H | P05019 | protein_coding | tolerated_low_confidence(0.28) | benign(0) | TCGA-AA-3984-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
IGF1 | SNV | Missense_Mutation | novel | c.133T>G | p.Ser45Ala | p.S45A | P05019 | protein_coding | tolerated(0.7) | benign(0.05) | TCGA-CM-4746-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
IGF1 | SNV | Missense_Mutation | c.394N>G | p.Thr132Ala | p.T132A | P05019 | protein_coding | tolerated(1) | benign(0) | TCGA-D5-6535-01 | Colorectum | colon adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD | |
IGF1 | SNV | Missense_Mutation | novel | c.157C>T | p.Leu53Phe | p.L53F | P05019 | protein_coding | deleterious(0) | probably_damaging(0.989) | TCGA-EI-6917-01 | Colorectum | rectum adenocarcinoma | Male | <65 | III/IV | Chemotherapy | 5fluorouracil+oxaciplatina+l-folinian | SD |
IGF1 | SNV | Missense_Mutation | c.364C>T | p.Arg122Cys | p.R122C | P05019 | protein_coding | deleterious(0) | probably_damaging(0.997) | TCGA-A5-A0G2-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD | |
IGF1 | SNV | Missense_Mutation | c.57N>A | p.Phe19Leu | p.F19L | P05019 | protein_coding | tolerated(0.37) | benign(0.009) | TCGA-A5-A2K5-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
IGF1 | SNV | Missense_Mutation | c.408N>T | p.Gln136His | p.Q136H | P05019 | protein_coding | tolerated(0.41) | benign(0) | TCGA-AP-A059-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
IGF1 | SNV | Missense_Mutation | c.167N>A | p.Ala56Asp | p.A56D | P05019 | protein_coding | deleterious(0) | possibly_damaging(0.841) | TCGA-AX-A0J0-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
IGF1 | SNV | Missense_Mutation | c.57N>A | p.Phe19Leu | p.F19L | P05019 | protein_coding | tolerated(0.37) | benign(0.009) | TCGA-BS-A0TC-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
3479 | IGF1 | GROWTH FACTOR, HORMONE ACTIVITY, CLINICALLY ACTIONABLE, DRUGGABLE GENOME, KINASE | BI-836845 | XENTUZUMAB | ||
3479 | IGF1 | GROWTH FACTOR, HORMONE ACTIVITY, CLINICALLY ACTIONABLE, DRUGGABLE GENOME, KINASE | Xentuzumab | XENTUZUMAB | ||
3479 | IGF1 | GROWTH FACTOR, HORMONE ACTIVITY, CLINICALLY ACTIONABLE, DRUGGABLE GENOME, KINASE | inhibitor | CHEMBL2109355 | DUSIGITUMAB | |
3479 | IGF1 | GROWTH FACTOR, HORMONE ACTIVITY, CLINICALLY ACTIONABLE, DRUGGABLE GENOME, KINASE | NNZ-2566 | |||
3479 | IGF1 | GROWTH FACTOR, HORMONE ACTIVITY, CLINICALLY ACTIONABLE, DRUGGABLE GENOME, KINASE | RECOMBINANT HUMAN INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-3 | |||
3479 | IGF1 | GROWTH FACTOR, HORMONE ACTIVITY, CLINICALLY ACTIONABLE, DRUGGABLE GENOME, KINASE | MEDI-573 | DUSIGITUMAB |
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