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Gene: TAF7 |
Gene summary for TAF7 |
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Gene information | Species | Human | Gene symbol | TAF7 | Gene ID | 6879 |
Gene name | TATA-box binding protein associated factor 7 | |
Gene Alias | TAF2F | |
Cytomap | 5q31.3 | |
Gene Type | protein-coding | GO ID | GO:0000122 | UniProtAcc | Q15545 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
6879 | TAF7 | AEH-subject2 | Human | Endometrium | AEH | 1.10e-12 | -3.42e-01 | -0.2525 |
6879 | TAF7 | AEH-subject3 | Human | Endometrium | AEH | 5.15e-12 | -3.67e-01 | -0.2576 |
6879 | TAF7 | AEH-subject4 | Human | Endometrium | AEH | 7.26e-07 | -2.12e-01 | -0.2657 |
6879 | TAF7 | AEH-subject5 | Human | Endometrium | AEH | 7.73e-10 | -3.82e-01 | -0.2953 |
6879 | TAF7 | EEC-subject1 | Human | Endometrium | EEC | 1.02e-14 | -3.41e-01 | -0.2682 |
6879 | TAF7 | EEC-subject2 | Human | Endometrium | EEC | 1.02e-05 | -2.68e-01 | -0.2607 |
6879 | TAF7 | EEC-subject3 | Human | Endometrium | EEC | 9.43e-31 | -4.72e-01 | -0.2525 |
6879 | TAF7 | EEC-subject4 | Human | Endometrium | EEC | 1.34e-02 | -2.63e-01 | -0.2571 |
6879 | TAF7 | EEC-subject5 | Human | Endometrium | EEC | 3.68e-04 | -2.99e-01 | -0.249 |
6879 | TAF7 | GSM5276937 | Human | Endometrium | EEC | 1.97e-02 | 1.59e-01 | -0.0897 |
6879 | TAF7 | GSM6177620_NYU_UCEC1_lib1_lib1 | Human | Endometrium | EEC | 4.27e-30 | -3.89e-01 | -0.1869 |
6879 | TAF7 | GSM6177620_NYU_UCEC1_lib2_lib2 | Human | Endometrium | EEC | 2.92e-36 | -3.20e-01 | -0.1875 |
6879 | TAF7 | GSM6177620_NYU_UCEC1_lib3_lib3 | Human | Endometrium | EEC | 8.20e-39 | -3.41e-01 | -0.1883 |
6879 | TAF7 | GSM6177621_NYU_UCEC2_lib1_lib1 | Human | Endometrium | EEC | 1.14e-26 | -4.00e-01 | -0.1934 |
6879 | TAF7 | GSM6177622_NYU_UCEC3_lib1_lib1 | Human | Endometrium | EEC | 1.97e-42 | -2.13e-01 | -0.1917 |
6879 | TAF7 | GSM6177622_NYU_UCEC3_lib2_lib2 | Human | Endometrium | EEC | 6.87e-58 | -3.20e-01 | -0.1916 |
6879 | TAF7 | GSM6177623_NYU_UCEC3_Vis | Human | Endometrium | EEC | 3.37e-05 | -1.55e-01 | -0.1269 |
6879 | TAF7 | LZE2T | Human | Esophagus | ESCC | 1.01e-05 | 5.14e-01 | 0.082 |
6879 | TAF7 | LZE3D | Human | Esophagus | HGIN | 3.03e-04 | 2.99e-01 | 0.0668 |
6879 | TAF7 | LZE4T | Human | Esophagus | ESCC | 1.51e-17 | 7.31e-01 | 0.0811 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:20007575 | Thyroid | PTC | negative regulation of peptidyl-lysine acetylation | 12/5968 | 20/18723 | 8.78e-03 | 3.66e-02 | 12 |
GO:001657017 | Thyroid | ATC | histone modification | 243/6293 | 463/18723 | 2.23e-17 | 2.27e-15 | 243 |
GO:001056334 | Thyroid | ATC | negative regulation of phosphorus metabolic process | 234/6293 | 442/18723 | 2.30e-17 | 2.31e-15 | 234 |
GO:004593634 | Thyroid | ATC | negative regulation of phosphate metabolic process | 233/6293 | 441/18723 | 3.68e-17 | 3.47e-15 | 233 |
GO:000193333 | Thyroid | ATC | negative regulation of protein phosphorylation | 186/6293 | 342/18723 | 1.43e-15 | 1.08e-13 | 186 |
GO:004232634 | Thyroid | ATC | negative regulation of phosphorylation | 203/6293 | 385/18723 | 5.30e-15 | 3.53e-13 | 203 |
GO:001820516 | Thyroid | ATC | peptidyl-lysine modification | 193/6293 | 376/18723 | 6.92e-13 | 3.06e-11 | 193 |
GO:000647315 | Thyroid | ATC | protein acetylation | 116/6293 | 201/18723 | 1.75e-12 | 7.33e-11 | 116 |
GO:004354315 | Thyroid | ATC | protein acylation | 134/6293 | 243/18723 | 3.46e-12 | 1.40e-10 | 134 |
GO:005134834 | Thyroid | ATC | negative regulation of transferase activity | 144/6293 | 268/18723 | 7.63e-12 | 2.91e-10 | 144 |
GO:001839415 | Thyroid | ATC | peptidyl-lysine acetylation | 100/6293 | 169/18723 | 7.65e-12 | 2.91e-10 | 100 |
GO:000647515 | Thyroid | ATC | internal protein amino acid acetylation | 93/6293 | 160/18723 | 1.59e-10 | 4.82e-09 | 93 |
GO:001839315 | Thyroid | ATC | internal peptidyl-lysine acetylation | 92/6293 | 158/18723 | 1.75e-10 | 5.24e-09 | 92 |
GO:001657314 | Thyroid | ATC | histone acetylation | 89/6293 | 152/18723 | 2.31e-10 | 6.72e-09 | 89 |
GO:0048545210 | Thyroid | ATC | response to steroid hormone | 168/6293 | 339/18723 | 7.21e-10 | 1.88e-08 | 168 |
GO:000646925 | Thyroid | ATC | negative regulation of protein kinase activity | 114/6293 | 212/18723 | 1.06e-09 | 2.69e-08 | 114 |
GO:0030522112 | Thyroid | ATC | intracellular receptor signaling pathway | 134/6293 | 265/18723 | 7.58e-09 | 1.63e-07 | 134 |
GO:003367325 | Thyroid | ATC | negative regulation of kinase activity | 122/6293 | 237/18723 | 9.19e-09 | 1.94e-07 | 122 |
GO:003105616 | Thyroid | ATC | regulation of histone modification | 85/6293 | 152/18723 | 1.23e-08 | 2.55e-07 | 85 |
GO:004396713 | Thyroid | ATC | histone H4 acetylation | 45/6293 | 67/18723 | 2.01e-08 | 3.93e-07 | 45 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa030222 | Esophagus | ESCC | Basal transcription factors | 35/4205 | 45/8465 | 1.01e-04 | 4.06e-04 | 2.08e-04 | 35 |
hsa0302211 | Esophagus | ESCC | Basal transcription factors | 35/4205 | 45/8465 | 1.01e-04 | 4.06e-04 | 2.08e-04 | 35 |
hsa03022 | Oral cavity | OSCC | Basal transcription factors | 28/3704 | 45/8465 | 9.53e-03 | 2.11e-02 | 1.08e-02 | 28 |
hsa030221 | Oral cavity | OSCC | Basal transcription factors | 28/3704 | 45/8465 | 9.53e-03 | 2.11e-02 | 1.08e-02 | 28 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
TAF7 | SNV | Missense_Mutation | c.539N>C | p.Arg180Pro | p.R180P | Q15545 | protein_coding | deleterious(0) | possibly_damaging(0.851) | TCGA-AR-A1AI-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | cytoxan | PD | |
TAF7 | insertion | In_Frame_Ins | novel | c.924_925insTCTGTTTTTCACTTTATAGTGTATCTTGTTCTTTCATGGTTG | p.Lys308_Val309insSerValPheHisPheIleValTyrLeuValLeuSerTrpLeu | p.K308_V309insSVFHFIVYLVLSWL | Q15545 | protein_coding | TCGA-A8-A07U-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Chemotherapy | 5-fluorouracil | SD | ||
TAF7 | SNV | Missense_Mutation | c.928N>A | p.Glu310Lys | p.E310K | Q15545 | protein_coding | deleterious(0.02) | probably_damaging(0.985) | TCGA-AA-A010-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Chemotherapy | folinic | CR | |
TAF7 | SNV | Missense_Mutation | c.674N>C | p.Asp225Ala | p.D225A | Q15545 | protein_coding | deleterious(0.01) | probably_damaging(0.996) | TCGA-CA-6717-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Chemotherapy | oxaliplatin | CR | |
TAF7 | SNV | Missense_Mutation | novel | c.750G>T | p.Glu250Asp | p.E250D | Q15545 | protein_coding | tolerated(0.17) | probably_damaging(0.978) | TCGA-AG-A002-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
TAF7 | deletion | Frame_Shift_Del | rs761173015 | c.250delN | p.Thr84LeufsTer57 | p.T84Lfs*57 | Q15545 | protein_coding | TCGA-G4-6302-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
TAF7 | deletion | Frame_Shift_Del | rs761173015 | c.250delN | p.Thr84LeufsTer57 | p.T84Lfs*57 | Q15545 | protein_coding | TCGA-G4-6320-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Chemotherapy | oxaliplatin | SD | ||
TAF7 | SNV | Missense_Mutation | c.403G>A | p.Gly135Arg | p.G135R | Q15545 | protein_coding | deleterious(0.02) | probably_damaging(1) | TCGA-A5-A2K3-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Chemotherapy | carboplatin | SD | |
TAF7 | SNV | Missense_Mutation | novel | c.742G>T | p.Asp248Tyr | p.D248Y | Q15545 | protein_coding | tolerated(0.24) | probably_damaging(0.915) | TCGA-AP-A0LM-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | cisplatin | SD |
TAF7 | SNV | Missense_Mutation | novel | c.375C>G | p.Asp125Glu | p.D125E | Q15545 | protein_coding | tolerated(1) | benign(0.047) | TCGA-AP-A0LM-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | cisplatin | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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