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Gene: ZDHHC9 |
Gene summary for ZDHHC9 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | ZDHHC9 | Gene ID | 51114 |
| Gene name | zinc finger DHHC-type palmitoyltransferase 9 | |
| Gene Alias | CGI89 | |
| Cytomap | Xq26.1 | |
| Gene Type | protein-coding | GO ID | GO:0000165 | UniProtAcc | Q9Y397 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 51114 | ZDHHC9 | HTA11_347_2000001011 | Human | Colorectum | AD | 1.18e-04 | 3.21e-01 | -0.1954 |
| 51114 | ZDHHC9 | HTA11_1391_2000001011 | Human | Colorectum | AD | 7.67e-07 | 4.53e-01 | -0.059 |
| 51114 | ZDHHC9 | HTA11_866_3004761011 | Human | Colorectum | AD | 1.34e-02 | 2.87e-01 | 0.096 |
| 51114 | ZDHHC9 | HTA11_99999965062_69753 | Human | Colorectum | MSI-H | 5.79e-04 | 1.01e+00 | 0.3487 |
| 51114 | ZDHHC9 | HTA11_99999965104_69814 | Human | Colorectum | MSS | 4.13e-15 | 8.89e-01 | 0.281 |
| 51114 | ZDHHC9 | HTA11_99999971662_82457 | Human | Colorectum | MSS | 2.14e-25 | 8.70e-01 | 0.3859 |
| 51114 | ZDHHC9 | HTA11_99999973899_84307 | Human | Colorectum | MSS | 2.61e-06 | 8.02e-01 | 0.2585 |
| 51114 | ZDHHC9 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 7.12e-22 | 8.18e-01 | 0.3005 |
| 51114 | ZDHHC9 | A015-C-203 | Human | Colorectum | FAP | 8.30e-05 | -9.59e-02 | -0.1294 |
| 51114 | ZDHHC9 | A002-C-201 | Human | Colorectum | FAP | 1.00e-02 | -1.56e-01 | 0.0324 |
| 51114 | ZDHHC9 | A002-C-205 | Human | Colorectum | FAP | 5.87e-04 | -1.73e-01 | -0.1236 |
| 51114 | ZDHHC9 | A002-C-114 | Human | Colorectum | FAP | 1.29e-02 | -1.36e-01 | -0.1561 |
| 51114 | ZDHHC9 | A015-C-104 | Human | Colorectum | FAP | 2.02e-04 | -1.01e-01 | -0.1899 |
| 51114 | ZDHHC9 | A002-C-016 | Human | Colorectum | FAP | 1.26e-06 | -1.53e-01 | 0.0521 |
| 51114 | ZDHHC9 | A002-C-116 | Human | Colorectum | FAP | 2.94e-07 | -1.78e-01 | -0.0452 |
| 51114 | ZDHHC9 | A018-E-020 | Human | Colorectum | FAP | 1.55e-04 | -1.90e-01 | -0.2034 |
| 51114 | ZDHHC9 | F034 | Human | Colorectum | FAP | 8.15e-05 | -1.58e-01 | -0.0665 |
| 51114 | ZDHHC9 | LZE4T | Human | Esophagus | ESCC | 5.87e-06 | 1.33e-01 | 0.0811 |
| 51114 | ZDHHC9 | LZE7T | Human | Esophagus | ESCC | 1.75e-08 | 6.48e-01 | 0.0667 |
| 51114 | ZDHHC9 | LZE8T | Human | Esophagus | ESCC | 7.88e-06 | 8.92e-02 | 0.067 |
| Page: 1 2 3 4 5 6 7 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Lung |  | AAH: Atypical adenomatous hyperplasia |
| AIS: Adenocarcinoma in situ | ||
| IAC: Invasive lung adenocarcinoma | ||
| MIA: Minimally invasive adenocarcinoma | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Thyroid |  | ATC: Anaplastic thyroid cancer |
| HT: Hashimoto's thyroiditis | ||
| PTC: Papillary thyroid cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:00421571 | Liver | HCC | lipoprotein metabolic process | 86/7958 | 135/18723 | 5.21e-07 | 8.38e-06 | 86 |
| GO:00421581 | Liver | HCC | lipoprotein biosynthetic process | 58/7958 | 96/18723 | 2.99e-04 | 2.13e-03 | 58 |
| GO:00066121 | Liver | HCC | protein targeting to membrane | 75/7958 | 131/18723 | 4.58e-04 | 3.04e-03 | 75 |
| GO:00064971 | Liver | HCC | protein lipidation | 55/7958 | 92/18723 | 6.12e-04 | 3.82e-03 | 55 |
| GO:00066058 | Lung | IAC | protein targeting | 51/2061 | 314/18723 | 2.91e-03 | 2.61e-02 | 51 |
| GO:00901508 | Lung | IAC | establishment of protein localization to membrane | 43/2061 | 260/18723 | 4.25e-03 | 3.39e-02 | 43 |
| GO:000660513 | Lung | AIS | protein targeting | 49/1849 | 314/18723 | 8.56e-04 | 1.17e-02 | 49 |
| GO:009015013 | Lung | AIS | establishment of protein localization to membrane | 42/1849 | 260/18723 | 9.73e-04 | 1.28e-02 | 42 |
| GO:000660520 | Oral cavity | OSCC | protein targeting | 204/7305 | 314/18723 | 6.78e-21 | 1.13e-18 | 204 |
| GO:009015018 | Oral cavity | OSCC | establishment of protein localization to membrane | 163/7305 | 260/18723 | 7.13e-15 | 4.47e-13 | 163 |
| GO:00435434 | Oral cavity | OSCC | protein acylation | 149/7305 | 243/18723 | 1.33e-12 | 5.80e-11 | 149 |
| GO:00421572 | Oral cavity | OSCC | lipoprotein metabolic process | 77/7305 | 135/18723 | 1.61e-05 | 1.60e-04 | 77 |
| GO:00066123 | Oral cavity | OSCC | protein targeting to membrane | 75/7305 | 131/18723 | 1.72e-05 | 1.69e-04 | 75 |
| GO:00064972 | Oral cavity | OSCC | protein lipidation | 56/7305 | 92/18723 | 1.77e-05 | 1.72e-04 | 56 |
| GO:00421582 | Oral cavity | OSCC | lipoprotein biosynthetic process | 57/7305 | 96/18723 | 4.17e-05 | 3.61e-04 | 57 |
| GO:0006605113 | Thyroid | PTC | protein targeting | 180/5968 | 314/18723 | 6.81e-21 | 1.19e-18 | 180 |
| GO:0090150112 | Thyroid | PTC | establishment of protein localization to membrane | 149/5968 | 260/18723 | 1.64e-17 | 1.59e-15 | 149 |
| GO:00435437 | Thyroid | PTC | protein acylation | 134/5968 | 243/18723 | 4.22e-14 | 2.58e-12 | 134 |
| GO:00066126 | Thyroid | PTC | protein targeting to membrane | 64/5968 | 131/18723 | 3.67e-05 | 3.41e-04 | 64 |
| GO:000660533 | Thyroid | ATC | protein targeting | 180/6293 | 314/18723 | 3.54e-18 | 4.39e-16 | 180 |
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| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| ZDHHC9 | SNV | Missense_Mutation | c.496N>A | p.Asp166Asn | p.D166N | Q9Y397 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-AR-A24V-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD | |
| ZDHHC9 | SNV | Missense_Mutation | novel | c.83G>A | p.Arg28His | p.R28H | Q9Y397 | protein_coding | deleterious(0.01) | possibly_damaging(0.721) | TCGA-AR-A2LK-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Hormone Therapy | anastrozole | PD |
| ZDHHC9 | SNV | Missense_Mutation | c.252G>T | p.Leu84Phe | p.L84F | Q9Y397 | protein_coding | tolerated(0.18) | possibly_damaging(0.593) | TCGA-GM-A2DI-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | taxotere | CR | |
| ZDHHC9 | insertion | Frame_Shift_Ins | novel | c.168-1_168insATCACTT | p.Cys57SerfsTer36 | p.C57Sfs*36 | Q9Y397 | protein_coding | TCGA-A8-A095-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | 5-fluorouracil | CR | ||
| ZDHHC9 | SNV | Missense_Mutation | rs767597857 | c.98G>A | p.Arg33Gln | p.R33Q | Q9Y397 | protein_coding | tolerated(0.1) | possibly_damaging(0.801) | TCGA-EA-A410-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
| ZDHHC9 | SNV | Missense_Mutation | c.667N>T | p.Pro223Ser | p.P223S | Q9Y397 | protein_coding | deleterious(0.02) | possibly_damaging(0.905) | TCGA-IR-A3LA-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR | |
| ZDHHC9 | SNV | Missense_Mutation | c.435N>T | p.Lys145Asn | p.K145N | Q9Y397 | protein_coding | deleterious(0) | possibly_damaging(0.823) | TCGA-AA-A010-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Chemotherapy | folinic | CR | |
| ZDHHC9 | SNV | Missense_Mutation | c.881N>T | p.Ser294Ile | p.S294I | Q9Y397 | protein_coding | deleterious(0) | probably_damaging(0.993) | TCGA-AA-A022-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
| ZDHHC9 | SNV | Missense_Mutation | novel | c.362G>A | p.Arg121Gln | p.R121Q | Q9Y397 | protein_coding | deleterious(0.02) | probably_damaging(0.981) | TCGA-CA-6717-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Chemotherapy | oxaliplatin | CR |
| ZDHHC9 | SNV | Missense_Mutation | c.1006G>A | p.Glu336Lys | p.E336K | Q9Y397 | protein_coding | tolerated(0.53) | benign(0.017) | TCGA-F4-6570-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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