GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0006896 | Liver | HCC | Golgi to vacuole transport | 15/7958 | 20/18723 | 3.31e-03 | 1.51e-02 | 15 |
GO:004819315 | Oral cavity | OSCC | Golgi vesicle transport | 209/7305 | 296/18723 | 1.39e-28 | 6.30e-26 | 209 |
GO:00161979 | Oral cavity | OSCC | endosomal transport | 141/7305 | 230/18723 | 5.40e-12 | 2.06e-10 | 141 |
GO:000703410 | Oral cavity | OSCC | vacuolar transport | 103/7305 | 157/18723 | 1.25e-11 | 4.44e-10 | 103 |
GO:00164829 | Oral cavity | OSCC | cytosolic transport | 106/7305 | 168/18723 | 2.08e-10 | 5.90e-09 | 106 |
GO:00068929 | Oral cavity | OSCC | post-Golgi vesicle-mediated transport | 71/7305 | 104/18723 | 1.37e-09 | 3.33e-08 | 71 |
GO:00070418 | Oral cavity | OSCC | lysosomal transport | 69/7305 | 114/18723 | 2.62e-06 | 3.26e-05 | 69 |
GO:00988769 | Oral cavity | OSCC | vesicle-mediated transport to the plasma membrane | 79/7305 | 136/18723 | 4.93e-06 | 5.58e-05 | 79 |
GO:00421476 | Oral cavity | OSCC | retrograde transport, endosome to Golgi | 55/7305 | 91/18723 | 2.79e-05 | 2.59e-04 | 55 |
GO:00068962 | Oral cavity | OSCC | Golgi to vacuole transport | 14/7305 | 20/18723 | 4.95e-03 | 1.94e-02 | 14 |
GO:004819316 | Oral cavity | LP | Golgi vesicle transport | 141/4623 | 296/18723 | 6.11e-18 | 1.06e-15 | 141 |
GO:000703415 | Oral cavity | LP | vacuolar transport | 74/4623 | 157/18723 | 7.85e-10 | 3.70e-08 | 74 |
GO:001619714 | Oral cavity | LP | endosomal transport | 98/4623 | 230/18723 | 1.65e-09 | 7.50e-08 | 98 |
GO:001648214 | Oral cavity | LP | cytosolic transport | 69/4623 | 168/18723 | 2.03e-06 | 4.65e-05 | 69 |
GO:000704114 | Oral cavity | LP | lysosomal transport | 49/4623 | 114/18723 | 1.38e-05 | 2.45e-04 | 49 |
GO:000689214 | Oral cavity | LP | post-Golgi vesicle-mediated transport | 44/4623 | 104/18723 | 5.90e-05 | 8.05e-04 | 44 |
GO:009887614 | Oral cavity | LP | vesicle-mediated transport to the plasma membrane | 53/4623 | 136/18723 | 1.54e-04 | 1.76e-03 | 53 |
GO:00068961 | Oral cavity | LP | Golgi to vacuole transport | 12/4623 | 20/18723 | 8.24e-04 | 7.23e-03 | 12 |
GO:004214713 | Oral cavity | LP | retrograde transport, endosome to Golgi | 36/4623 | 91/18723 | 1.20e-03 | 9.67e-03 | 36 |
GO:00324564 | Oral cavity | LP | endocytic recycling | 28/4623 | 73/18723 | 6.61e-03 | 3.86e-02 | 28 |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
VPS52 | SNV | Missense_Mutation | | c.1019G>A | p.Ser340Asn | p.S340N | Q8N1B4 | protein_coding | tolerated(1) | benign(0.003) | TCGA-BH-A0HA-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
VPS52 | SNV | Missense_Mutation | | c.1781N>G | p.Asn594Ser | p.N594S | Q8N1B4 | protein_coding | tolerated(0.95) | benign(0.046) | TCGA-BH-A1FR-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Unknown | Unknown | PD |
VPS52 | SNV | Missense_Mutation | novel | c.580N>G | p.Arg194Gly | p.R194G | Q8N1B4 | protein_coding | tolerated(0.06) | benign(0) | TCGA-EW-A423-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | anastrozole | SD |
VPS52 | insertion | Frame_Shift_Ins | novel | c.1552_1553insTGCCTTCCTACCCAGAAAATTCGGTTTCC | p.Ser518LeufsTer57 | p.S518Lfs*57 | Q8N1B4 | protein_coding | | | TCGA-AO-A0J9-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | cyclophosphamide | PD |
VPS52 | SNV | Missense_Mutation | novel | c.2060N>A | p.Arg687His | p.R687H | Q8N1B4 | protein_coding | deleterious(0.01) | probably_damaging(0.961) | TCGA-EA-A3HS-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
VPS52 | SNV | Missense_Mutation | novel | c.214G>C | p.Glu72Gln | p.E72Q | Q8N1B4 | protein_coding | tolerated(0.13) | benign(0.353) | TCGA-EA-A5ZE-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | PD |
VPS52 | SNV | Missense_Mutation | | c.2121C>G | p.Ile707Met | p.I707M | Q8N1B4 | protein_coding | deleterious(0) | possibly_damaging(0.812) | TCGA-IR-A3LA-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
VPS52 | SNV | Missense_Mutation | rs375033520 | c.8N>T | p.Ala3Val | p.A3V | Q8N1B4 | protein_coding | tolerated_low_confidence(0.15) | benign(0.235) | TCGA-AA-3492-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
VPS52 | SNV | Missense_Mutation | rs535462681 | c.476N>A | p.Arg159Gln | p.R159Q | Q8N1B4 | protein_coding | tolerated(0.45) | benign(0.014) | TCGA-AA-3984-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
VPS52 | SNV | Missense_Mutation | | c.1264A>G | p.Thr422Ala | p.T422A | Q8N1B4 | protein_coding | tolerated(0.12) | benign(0.134) | TCGA-AA-A00N-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |