|
|||||
|
 | |
| |
| |
| |
| |
| |
|
Gene: FST |
Gene summary for FST |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | FST | Gene ID | 10468 |
| Gene name | follistatin | |
| Gene Alias | FS | |
| Cytomap | 5q11.2 | |
| Gene Type | protein-coding | GO ID | GO:0000003 | UniProtAcc | P19883 |
Top |
Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 10468 | FST | LZE4T | Human | Esophagus | ESCC | 3.66e-05 | 8.50e-02 | 0.0811 |
| 10468 | FST | LZE20T | Human | Esophagus | ESCC | 5.78e-03 | 6.29e-02 | 0.0662 |
| 10468 | FST | LZE21T | Human | Esophagus | ESCC | 2.84e-02 | 3.42e-01 | 0.0655 |
| 10468 | FST | P2T-E | Human | Esophagus | ESCC | 1.71e-05 | 2.23e-01 | 0.1177 |
| 10468 | FST | P4T-E | Human | Esophagus | ESCC | 5.99e-37 | 1.92e+00 | 0.1323 |
| 10468 | FST | P9T-E | Human | Esophagus | ESCC | 1.52e-18 | 8.37e-01 | 0.1131 |
| 10468 | FST | P10T-E | Human | Esophagus | ESCC | 3.35e-80 | 1.75e+00 | 0.116 |
| 10468 | FST | P11T-E | Human | Esophagus | ESCC | 1.81e-02 | 3.11e-01 | 0.1426 |
| 10468 | FST | P12T-E | Human | Esophagus | ESCC | 2.80e-100 | 4.00e+00 | 0.1122 |
| 10468 | FST | P15T-E | Human | Esophagus | ESCC | 2.08e-49 | 2.34e+00 | 0.1149 |
| 10468 | FST | P16T-E | Human | Esophagus | ESCC | 1.65e-11 | 4.88e-01 | 0.1153 |
| 10468 | FST | P17T-E | Human | Esophagus | ESCC | 1.42e-07 | 6.57e-01 | 0.1278 |
| 10468 | FST | P20T-E | Human | Esophagus | ESCC | 1.94e-16 | 5.90e-01 | 0.1124 |
| 10468 | FST | P21T-E | Human | Esophagus | ESCC | 1.03e-59 | 3.43e+00 | 0.1617 |
| 10468 | FST | P22T-E | Human | Esophagus | ESCC | 2.21e-35 | 1.04e+00 | 0.1236 |
| 10468 | FST | P23T-E | Human | Esophagus | ESCC | 2.01e-03 | 3.77e-01 | 0.108 |
| 10468 | FST | P26T-E | Human | Esophagus | ESCC | 1.59e-60 | 2.03e+00 | 0.1276 |
| 10468 | FST | P27T-E | Human | Esophagus | ESCC | 4.51e-30 | 1.24e+00 | 0.1055 |
| 10468 | FST | P28T-E | Human | Esophagus | ESCC | 9.63e-06 | 4.30e-01 | 0.1149 |
| 10468 | FST | P30T-E | Human | Esophagus | ESCC | 5.42e-14 | 1.39e+00 | 0.137 |
| Page: 1 2 3 4 5 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Skin |  | AK: Actinic keratosis |
| cSCC: Cutaneous squamous cell carcinoma | ||
| SCCIS:squamous cell carcinoma in situ |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
Top |
Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:004887217 | Endometrium | EEC | homeostasis of number of cells | 53/2168 | 272/18723 | 9.52e-05 | 1.34e-03 | 53 |
| GO:003050911 | Endometrium | EEC | BMP signaling pathway | 32/2168 | 152/18723 | 5.52e-04 | 5.52e-03 | 32 |
| GO:007177211 | Endometrium | EEC | response to BMP | 33/2168 | 165/18723 | 1.16e-03 | 9.90e-03 | 33 |
| GO:007177311 | Endometrium | EEC | cellular response to BMP stimulus | 33/2168 | 165/18723 | 1.16e-03 | 9.90e-03 | 33 |
| GO:004544613 | Endometrium | EEC | endothelial cell differentiation | 25/2168 | 118/18723 | 1.93e-03 | 1.47e-02 | 25 |
| GO:009009211 | Endometrium | EEC | regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | 44/2168 | 256/18723 | 4.72e-03 | 3.00e-02 | 44 |
| GO:0048732111 | Esophagus | ESCC | gland development | 269/8552 | 436/18723 | 7.81e-12 | 2.95e-10 | 269 |
| GO:0030099111 | Esophagus | ESCC | myeloid cell differentiation | 232/8552 | 381/18723 | 1.22e-09 | 2.90e-08 | 232 |
| GO:004578527 | Esophagus | ESCC | positive regulation of cell adhesion | 255/8552 | 437/18723 | 5.07e-08 | 9.11e-07 | 255 |
| GO:00435888 | Esophagus | ESCC | skin development | 163/8552 | 263/18723 | 6.48e-08 | 1.14e-06 | 163 |
| GO:0061458110 | Esophagus | ESCC | reproductive system development | 247/8552 | 427/18723 | 2.24e-07 | 3.42e-06 | 247 |
| GO:004860818 | Esophagus | ESCC | reproductive structure development | 245/8552 | 424/18723 | 2.82e-07 | 4.14e-06 | 245 |
| GO:000854410 | Esophagus | ESCC | epidermis development | 193/8552 | 324/18723 | 2.87e-07 | 4.19e-06 | 193 |
| GO:0048872111 | Esophagus | ESCC | homeostasis of number of cells | 163/8552 | 272/18723 | 1.40e-06 | 1.69e-05 | 163 |
| GO:000257317 | Esophagus | ESCC | myeloid leukocyte differentiation | 128/8552 | 208/18723 | 2.75e-06 | 3.15e-05 | 128 |
| GO:000150317 | Esophagus | ESCC | ossification | 232/8552 | 408/18723 | 3.00e-06 | 3.40e-05 | 232 |
| GO:00303239 | Esophagus | ESCC | respiratory tube development | 112/8552 | 181/18723 | 7.82e-06 | 7.69e-05 | 112 |
| GO:00605417 | Esophagus | ESCC | respiratory system development | 123/8552 | 203/18723 | 1.26e-05 | 1.15e-04 | 123 |
| GO:00303249 | Esophagus | ESCC | lung development | 109/8552 | 177/18723 | 1.40e-05 | 1.27e-04 | 109 |
| GO:001003827 | Esophagus | ESCC | response to metal ion | 208/8552 | 373/18723 | 5.02e-05 | 3.90e-04 | 208 |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa043507 | Esophagus | ESCC | TGF-beta signaling pathway | 69/4205 | 108/8465 | 1.92e-03 | 5.54e-03 | 2.84e-03 | 69 |
| hsa0435014 | Esophagus | ESCC | TGF-beta signaling pathway | 69/4205 | 108/8465 | 1.92e-03 | 5.54e-03 | 2.84e-03 | 69 |
| hsa043506 | Oral cavity | OSCC | TGF-beta signaling pathway | 60/3704 | 108/8465 | 8.66e-03 | 1.97e-02 | 1.00e-02 | 60 |
| hsa0435013 | Oral cavity | OSCC | TGF-beta signaling pathway | 60/3704 | 108/8465 | 8.66e-03 | 1.97e-02 | 1.00e-02 | 60 |
| hsa0435041 | Oral cavity | NEOLP | TGF-beta signaling pathway | 28/1112 | 108/8465 | 2.46e-04 | 1.62e-03 | 1.02e-03 | 28 |
| hsa0435051 | Oral cavity | NEOLP | TGF-beta signaling pathway | 28/1112 | 108/8465 | 2.46e-04 | 1.62e-03 | 1.02e-03 | 28 |
| Page: 1 |
Top |
Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
Top |
Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
Top |
Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| FST | SNV | Missense_Mutation | c.495A>C | p.Lys165Asn | p.K165N | P19883 | protein_coding | deleterious(0) | possibly_damaging(0.845) | TCGA-AR-A24Q-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD | |
| FST | SNV | Missense_Mutation | rs370731523 | c.940N>A | p.Gly314Arg | p.G314R | P19883 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-LD-A7W5-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | taxotere | SD |
| FST | insertion | Frame_Shift_Ins | novel | c.922_923insT | p.Glu309GlyfsTer22 | p.E309Gfs*22 | P19883 | protein_coding | TCGA-E2-A1IO-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | docetaxel | SD | ||
| FST | SNV | Missense_Mutation | rs202174134 | c.836N>T | p.Ser279Leu | p.S279L | P19883 | protein_coding | deleterious(0.05) | benign(0.178) | TCGA-UC-A7PG-06 | Cervix | cervical & endocervical cancer | Female | <65 | III/IV | Chemotherapy | cisplatin | PD |
| FST | SNV | Missense_Mutation | novel | c.898G>T | p.Ala300Ser | p.A300S | P19883 | protein_coding | tolerated(0.56) | possibly_damaging(0.732) | TCGA-VS-A8EJ-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | PD |
| FST | SNV | Missense_Mutation | c.695N>A | p.Gly232Glu | p.G232E | P19883 | protein_coding | deleterious(0.04) | probably_damaging(1) | TCGA-AA-A00N-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
| FST | SNV | Missense_Mutation | c.498N>T | p.Lys166Asn | p.K166N | P19883 | protein_coding | deleterious(0) | benign(0.092) | TCGA-AZ-4315-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
| FST | SNV | Missense_Mutation | rs371840444 | c.959C>T | p.Ser320Leu | p.S320L | P19883 | protein_coding | tolerated(0.07) | benign(0.003) | TCGA-CA-6718-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | PD |
| FST | SNV | Missense_Mutation | novel | c.446G>T | p.Arg149Ile | p.R149I | P19883 | protein_coding | deleterious(0) | possibly_damaging(0.568) | TCGA-AG-A002-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
| FST | SNV | Missense_Mutation | rs150238035 | c.52N>T | p.Leu18Phe | p.L18F | P19883 | protein_coding | tolerated(0.21) | benign(0.001) | TCGA-F5-6814-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
| Page: 1 2 3 4 5 |
Top |
Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| 10468 | FST | DRUGGABLE GENOME | ANTI-ANDROGEN | 14761877 | ||
| 10468 | FST | DRUGGABLE GENOME | TUMOR NECROSIS FACTOR | 17436000 | ||
| 10468 | FST | DRUGGABLE GENOME | KINASE INHIBITOR | 16854407 | ||
| 10468 | FST | DRUGGABLE GENOME | INDOMETHACIN | INDOMETHACIN | 15941869 | |
| 10468 | FST | DRUGGABLE GENOME | FREUNDS ADJUVANT | 10734405 | ||
| 10468 | FST | DRUGGABLE GENOME | INHIBINS | 10864854 | ||
| 10468 | FST | DRUGGABLE GENOME | ALPHA-ADRENERGIC AGONIST | 9427529 | ||
| 10468 | FST | DRUGGABLE GENOME | NERVE GROWTH FACTOR | 9770356 | ||
| 10468 | FST | DRUGGABLE GENOME | BICALUTAMIDE | BICALUTAMIDE | 14761877 | |
| 10468 | FST | DRUGGABLE GENOME | ANDROGENS | 14512439 |
| Page: 1 2 |
Copyright 2023-Present -The University of Texas Health Science Center at Houston |