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Gene: BTN3A1 |
Gene summary for BTN3A1 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | BTN3A1 | Gene ID | 11119 |
| Gene name | butyrophilin subfamily 3 member A1 | |
| Gene Alias | BT3.1 | |
| Cytomap | 6p22.2 | |
| Gene Type | protein-coding | GO ID | GO:0001775 | UniProtAcc | O00481 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 11119 | BTN3A1 | LZE4T | Human | Esophagus | ESCC | 3.80e-04 | 1.25e-01 | 0.0811 |
| 11119 | BTN3A1 | LZE20T | Human | Esophagus | ESCC | 1.28e-03 | 1.27e-01 | 0.0662 |
| 11119 | BTN3A1 | LZE24T | Human | Esophagus | ESCC | 2.02e-16 | 5.29e-01 | 0.0596 |
| 11119 | BTN3A1 | P2T-E | Human | Esophagus | ESCC | 7.17e-25 | 4.03e-01 | 0.1177 |
| 11119 | BTN3A1 | P4T-E | Human | Esophagus | ESCC | 2.18e-05 | 1.12e-01 | 0.1323 |
| 11119 | BTN3A1 | P5T-E | Human | Esophagus | ESCC | 1.03e-02 | 2.54e-02 | 0.1327 |
| 11119 | BTN3A1 | P8T-E | Human | Esophagus | ESCC | 1.40e-17 | 2.07e-01 | 0.0889 |
| 11119 | BTN3A1 | P9T-E | Human | Esophagus | ESCC | 1.07e-12 | 1.64e-01 | 0.1131 |
| 11119 | BTN3A1 | P11T-E | Human | Esophagus | ESCC | 7.72e-11 | 3.77e-01 | 0.1426 |
| 11119 | BTN3A1 | P12T-E | Human | Esophagus | ESCC | 1.01e-06 | 4.59e-02 | 0.1122 |
| 11119 | BTN3A1 | P15T-E | Human | Esophagus | ESCC | 1.31e-03 | 7.94e-02 | 0.1149 |
| 11119 | BTN3A1 | P16T-E | Human | Esophagus | ESCC | 1.66e-07 | 9.78e-02 | 0.1153 |
| 11119 | BTN3A1 | P17T-E | Human | Esophagus | ESCC | 7.16e-05 | 1.53e-01 | 0.1278 |
| 11119 | BTN3A1 | P21T-E | Human | Esophagus | ESCC | 2.01e-15 | 2.09e-01 | 0.1617 |
| 11119 | BTN3A1 | P22T-E | Human | Esophagus | ESCC | 5.68e-07 | 1.24e-01 | 0.1236 |
| 11119 | BTN3A1 | P23T-E | Human | Esophagus | ESCC | 5.55e-07 | 1.91e-01 | 0.108 |
| 11119 | BTN3A1 | P24T-E | Human | Esophagus | ESCC | 6.77e-10 | 2.65e-01 | 0.1287 |
| 11119 | BTN3A1 | P26T-E | Human | Esophagus | ESCC | 1.16e-11 | 1.20e-01 | 0.1276 |
| 11119 | BTN3A1 | P27T-E | Human | Esophagus | ESCC | 9.56e-16 | 1.52e-01 | 0.1055 |
| 11119 | BTN3A1 | P28T-E | Human | Esophagus | ESCC | 6.52e-03 | 6.25e-02 | 0.1149 |
| Page: 1 2 3 4 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Prostate |  | BPH: Benign Prostatic Hyperplasia |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:004209817 | Oral cavity | EOLP | T cell proliferation | 44/2218 | 199/18723 | 2.86e-05 | 4.14e-04 | 44 |
| GO:004665112 | Oral cavity | EOLP | lymphocyte proliferation | 58/2218 | 288/18723 | 3.29e-05 | 4.63e-04 | 58 |
| GO:00329436 | Oral cavity | EOLP | mononuclear cell proliferation | 58/2218 | 291/18723 | 4.48e-05 | 5.99e-04 | 58 |
| GO:00508514 | Oral cavity | EOLP | antigen receptor-mediated signaling pathway | 48/2218 | 240/18723 | 1.79e-04 | 1.84e-03 | 48 |
| GO:004211015 | Prostate | Tumor | T cell activation | 117/3246 | 487/18723 | 9.22e-05 | 9.05e-04 | 117 |
| GO:005085213 | Prostate | Tumor | T cell receptor signaling pathway | 37/3246 | 123/18723 | 3.47e-04 | 2.74e-03 | 37 |
| GO:000181914 | Prostate | Tumor | positive regulation of cytokine production | 109/3246 | 467/18723 | 4.98e-04 | 3.67e-03 | 109 |
| GO:004209815 | Prostate | Tumor | T cell proliferation | 49/3246 | 199/18723 | 5.61e-03 | 2.63e-02 | 49 |
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| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| BTN3A1 | SNV | Missense_Mutation | c.944N>T | p.Arg315Ile | p.R315I | O00481 | protein_coding | deleterious(0.02) | benign(0.003) | TCGA-A2-A25A-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unspecific | Cytoxan | SD | |
| BTN3A1 | SNV | Missense_Mutation | novel | c.100N>T | p.Leu34Phe | p.L34F | O00481 | protein_coding | tolerated(0.06) | possibly_damaging(0.812) | TCGA-AN-A0AK-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| BTN3A1 | SNV | Missense_Mutation | c.139G>C | p.Asp47His | p.D47H | O00481 | protein_coding | deleterious(0.01) | probably_damaging(0.979) | TCGA-BH-A0AW-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | carboplatin | SD | |
| BTN3A1 | SNV | Missense_Mutation | c.206N>C | p.Ser69Thr | p.S69T | O00481 | protein_coding | deleterious(0) | possibly_damaging(0.527) | TCGA-BH-A0H9-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | arimidex | SD | |
| BTN3A1 | SNV | Missense_Mutation | c.802N>G | p.Tyr268Asp | p.Y268D | O00481 | protein_coding | tolerated(0.07) | benign(0.272) | TCGA-E2-A15S-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD | |
| BTN3A1 | insertion | Frame_Shift_Ins | novel | c.381_382insAATAATTA | p.Phe128AsnfsTer17 | p.F128Nfs*17 | O00481 | protein_coding | TCGA-B6-A0IB-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Unknown | Unknown | PD | ||
| BTN3A1 | deletion | Frame_Shift_Del | rs35139329 | c.833delA | p.Lys278ArgfsTer13 | p.K278Rfs*13 | O00481 | protein_coding | TCGA-BH-A0HA-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | ||
| BTN3A1 | deletion | Frame_Shift_Del | novel | c.1375delN | p.Val460TrpfsTer42 | p.V460Wfs*42 | O00481 | protein_coding | TCGA-PL-A8LY-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | ||
| BTN3A1 | SNV | Missense_Mutation | rs754276670 | c.682G>A | p.Gly228Ser | p.G228S | O00481 | protein_coding | tolerated(0.33) | benign(0.02) | TCGA-EA-A410-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
| BTN3A1 | SNV | Missense_Mutation | c.974G>C | p.Arg325Thr | p.R325T | O00481 | protein_coding | deleterious(0.02) | benign(0.026) | TCGA-Q1-A73O-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
| Page: 1 2 3 4 5 6 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| 11119 | BTN3A1 | EXTERNAL SIDE OF PLASMA MEMBRANE, DRUGGABLE GENOME, B30_2 SPRY DOMAIN | 340590246 |
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