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Gene: ATP5F1C |
Gene summary for ATP5F1C |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | ATP5F1C | Gene ID | 509 |
| Gene name | ATP synthase F1 subunit gamma | |
| Gene Alias | ATP5C | |
| Cytomap | 10p14 | |
| Gene Type | protein-coding | GO ID | GO:0006091 | UniProtAcc | P36542 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 509 | ATP5F1C | GSM4909281 | Human | Breast | IDC | 5.14e-16 | 5.46e-01 | 0.21 |
| 509 | ATP5F1C | GSM4909282 | Human | Breast | IDC | 2.09e-07 | 3.39e-01 | -0.0288 |
| 509 | ATP5F1C | GSM4909285 | Human | Breast | IDC | 1.30e-78 | 1.12e+00 | 0.21 |
| 509 | ATP5F1C | GSM4909286 | Human | Breast | IDC | 5.43e-17 | 4.19e-01 | 0.1081 |
| 509 | ATP5F1C | GSM4909287 | Human | Breast | IDC | 9.30e-05 | 3.75e-01 | 0.2057 |
| 509 | ATP5F1C | GSM4909290 | Human | Breast | IDC | 4.42e-02 | 2.73e-01 | 0.2096 |
| 509 | ATP5F1C | GSM4909293 | Human | Breast | IDC | 6.65e-06 | 1.72e-01 | 0.1581 |
| 509 | ATP5F1C | GSM4909296 | Human | Breast | IDC | 1.77e-02 | 1.98e-01 | 0.1524 |
| 509 | ATP5F1C | GSM4909297 | Human | Breast | IDC | 1.23e-02 | 7.58e-02 | 0.1517 |
| 509 | ATP5F1C | GSM4909298 | Human | Breast | IDC | 9.92e-03 | 8.18e-02 | 0.1551 |
| 509 | ATP5F1C | GSM4909305 | Human | Breast | IDC | 1.97e-07 | 3.90e-01 | 0.0436 |
| 509 | ATP5F1C | GSM4909306 | Human | Breast | IDC | 9.97e-07 | 3.14e-01 | 0.1564 |
| 509 | ATP5F1C | GSM4909307 | Human | Breast | IDC | 8.39e-03 | 3.11e-01 | 0.1569 |
| 509 | ATP5F1C | GSM4909308 | Human | Breast | IDC | 2.09e-21 | 5.68e-01 | 0.158 |
| 509 | ATP5F1C | GSM4909311 | Human | Breast | IDC | 9.56e-15 | -2.02e-02 | 0.1534 |
| 509 | ATP5F1C | GSM4909312 | Human | Breast | IDC | 2.15e-07 | 3.37e-01 | 0.1552 |
| 509 | ATP5F1C | GSM4909315 | Human | Breast | IDC | 9.83e-22 | 6.42e-01 | 0.21 |
| 509 | ATP5F1C | GSM4909316 | Human | Breast | IDC | 1.03e-09 | 6.18e-01 | 0.21 |
| 509 | ATP5F1C | GSM4909317 | Human | Breast | IDC | 1.26e-04 | 2.68e-01 | 0.1355 |
| 509 | ATP5F1C | GSM4909318 | Human | Breast | IDC | 1.08e-04 | 5.75e-01 | 0.2031 |
| Page: 1 2 3 4 5 6 7 8 9 10 11 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Breast |  | IDC: Invasive ductal carcinoma |
| DCIS: Ductal carcinoma in situ | ||
| Precancer(BRCA1-mut): Precancerous lesion from BRCA1 mutation carriers | ||
| Cervix |  | CC: Cervix cancer |
| HSIL_HPV: HPV-infected high-grade squamous intraepithelial lesions | ||
| N_HPV: HPV-infected normal cervix | ||
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Endometrium |  | AEH: Atypical endometrial hyperplasia |
| EEC: Endometrioid Cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| GC |  | CAG: Chronic atrophic gastritis |
| CAG with IM: Chronic atrophic gastritis with intestinal metaplasia | ||
| CSG: Chronic superficial gastritis | ||
| GC: Gastric cancer | ||
| SIM: Severe intestinal metaplasia | ||
| WIM: Wild intestinal metaplasia | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Lung |  | AAH: Atypical adenomatous hyperplasia |
| AIS: Adenocarcinoma in situ | ||
| IAC: Invasive lung adenocarcinoma | ||
| MIA: Minimally invasive adenocarcinoma | ||
| Prostate |  | BPH: Benign Prostatic Hyperplasia |
| Thyroid |  | ATC: Anaplastic thyroid cancer |
| HT: Hashimoto's thyroiditis | ||
| PTC: Papillary thyroid cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:00067549 | Endometrium | AEH | ATP biosynthetic process | 24/2100 | 57/18723 | 2.58e-09 | 1.98e-07 | 24 |
| GO:00091999 | Endometrium | AEH | ribonucleoside triphosphate metabolic process | 31/2100 | 89/18723 | 3.47e-09 | 2.51e-07 | 31 |
| GO:00091429 | Endometrium | AEH | nucleoside triphosphate biosynthetic process | 30/2100 | 85/18723 | 4.34e-09 | 3.10e-07 | 30 |
| GO:00427768 | Endometrium | AEH | mitochondrial ATP synthesis coupled proton transport | 13/2100 | 19/18723 | 6.06e-09 | 4.28e-07 | 13 |
| GO:000914110 | Endometrium | AEH | nucleoside triphosphate metabolic process | 35/2100 | 112/18723 | 9.17e-09 | 6.25e-07 | 35 |
| GO:190260010 | Endometrium | AEH | proton transmembrane transport | 43/2100 | 157/18723 | 1.70e-08 | 1.04e-06 | 43 |
| GO:19905429 | Endometrium | AEH | mitochondrial transmembrane transport | 31/2100 | 102/18723 | 1.29e-07 | 5.97e-06 | 31 |
| GO:000915016 | Endometrium | AEH | purine ribonucleotide metabolic process | 68/2100 | 368/18723 | 2.26e-05 | 4.35e-04 | 68 |
| GO:000616316 | Endometrium | AEH | purine nucleotide metabolic process | 70/2100 | 396/18723 | 7.46e-05 | 1.13e-03 | 70 |
| GO:000925910 | Endometrium | AEH | ribonucleotide metabolic process | 68/2100 | 385/18723 | 9.63e-05 | 1.39e-03 | 68 |
| GO:001969310 | Endometrium | AEH | ribose phosphate metabolic process | 69/2100 | 396/18723 | 1.31e-04 | 1.79e-03 | 69 |
| GO:007252116 | Endometrium | AEH | purine-containing compound metabolic process | 71/2100 | 416/18723 | 2.01e-04 | 2.54e-03 | 71 |
| GO:000915210 | Endometrium | AEH | purine ribonucleotide biosynthetic process | 35/2100 | 169/18723 | 2.36e-04 | 2.84e-03 | 35 |
| GO:000911715 | Endometrium | AEH | nucleotide metabolic process | 78/2100 | 489/18723 | 8.39e-04 | 7.82e-03 | 78 |
| GO:00092609 | Endometrium | AEH | ribonucleotide biosynthetic process | 35/2100 | 182/18723 | 9.88e-04 | 8.90e-03 | 35 |
| GO:00463909 | Endometrium | AEH | ribose phosphate biosynthetic process | 36/2100 | 190/18723 | 1.11e-03 | 9.74e-03 | 36 |
| GO:000675314 | Endometrium | AEH | nucleoside phosphate metabolic process | 78/2100 | 497/18723 | 1.34e-03 | 1.13e-02 | 78 |
| GO:00061648 | Endometrium | AEH | purine nucleotide biosynthetic process | 35/2100 | 191/18723 | 2.34e-03 | 1.76e-02 | 35 |
| GO:00725228 | Endometrium | AEH | purine-containing compound biosynthetic process | 35/2100 | 200/18723 | 5.05e-03 | 3.16e-02 | 35 |
| GO:004603417 | Endometrium | EEC | ATP metabolic process | 107/2168 | 277/18723 | 1.32e-31 | 3.95e-28 | 107 |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa0501218 | Breast | Precancer | Parkinson disease | 99/684 | 266/8465 | 3.58e-42 | 5.65e-40 | 4.33e-40 | 99 |
| hsa0502016 | Breast | Precancer | Prion disease | 95/684 | 273/8465 | 1.39e-37 | 1.46e-35 | 1.12e-35 | 95 |
| hsa0501616 | Breast | Precancer | Huntington disease | 98/684 | 306/8465 | 2.85e-35 | 2.25e-33 | 1.72e-33 | 98 |
| hsa0019016 | Breast | Precancer | Oxidative phosphorylation | 59/684 | 134/8465 | 6.15e-30 | 3.24e-28 | 2.48e-28 | 59 |
| hsa0501016 | Breast | Precancer | Alzheimer disease | 103/684 | 384/8465 | 1.03e-29 | 4.66e-28 | 3.57e-28 | 103 |
| hsa0501416 | Breast | Precancer | Amyotrophic lateral sclerosis | 98/684 | 364/8465 | 2.13e-28 | 8.41e-27 | 6.44e-27 | 98 |
| hsa0502216 | Breast | Precancer | Pathways of neurodegeneration - multiple diseases | 112/684 | 476/8465 | 6.96e-27 | 2.44e-25 | 1.87e-25 | 112 |
| hsa0520818 | Breast | Precancer | Chemical carcinogenesis - reactive oxygen species | 68/684 | 223/8465 | 3.61e-23 | 1.14e-21 | 8.73e-22 | 68 |
| hsa0471418 | Breast | Precancer | Thermogenesis | 68/684 | 232/8465 | 4.40e-22 | 1.26e-20 | 9.69e-21 | 68 |
| hsa0541518 | Breast | Precancer | Diabetic cardiomyopathy | 63/684 | 203/8465 | 5.63e-22 | 1.48e-20 | 1.14e-20 | 63 |
| hsa0501219 | Breast | Precancer | Parkinson disease | 99/684 | 266/8465 | 3.58e-42 | 5.65e-40 | 4.33e-40 | 99 |
| hsa0502017 | Breast | Precancer | Prion disease | 95/684 | 273/8465 | 1.39e-37 | 1.46e-35 | 1.12e-35 | 95 |
| hsa0501617 | Breast | Precancer | Huntington disease | 98/684 | 306/8465 | 2.85e-35 | 2.25e-33 | 1.72e-33 | 98 |
| hsa0019017 | Breast | Precancer | Oxidative phosphorylation | 59/684 | 134/8465 | 6.15e-30 | 3.24e-28 | 2.48e-28 | 59 |
| hsa0501017 | Breast | Precancer | Alzheimer disease | 103/684 | 384/8465 | 1.03e-29 | 4.66e-28 | 3.57e-28 | 103 |
| hsa0501417 | Breast | Precancer | Amyotrophic lateral sclerosis | 98/684 | 364/8465 | 2.13e-28 | 8.41e-27 | 6.44e-27 | 98 |
| hsa0502217 | Breast | Precancer | Pathways of neurodegeneration - multiple diseases | 112/684 | 476/8465 | 6.96e-27 | 2.44e-25 | 1.87e-25 | 112 |
| hsa0520819 | Breast | Precancer | Chemical carcinogenesis - reactive oxygen species | 68/684 | 223/8465 | 3.61e-23 | 1.14e-21 | 8.73e-22 | 68 |
| hsa0471419 | Breast | Precancer | Thermogenesis | 68/684 | 232/8465 | 4.40e-22 | 1.26e-20 | 9.69e-21 | 68 |
| hsa0541519 | Breast | Precancer | Diabetic cardiomyopathy | 63/684 | 203/8465 | 5.63e-22 | 1.48e-20 | 1.14e-20 | 63 |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| Page: 1 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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