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Gene: RICTOR |
Gene summary for RICTOR |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | RICTOR | Gene ID | 253260 |
| Gene name | RPTOR independent companion of MTOR complex 2 | |
| Gene Alias | AVO3 | |
| Cytomap | 5p13.1 | |
| Gene Type | protein-coding | GO ID | GO:0001932 | UniProtAcc | Q6R327 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 253260 | RICTOR | CA_HPV_1 | Human | Cervix | CC | 2.48e-03 | 1.49e-01 | 0.0264 |
| 253260 | RICTOR | CCI_1 | Human | Cervix | CC | 8.38e-09 | 1.14e+00 | 0.528 |
| 253260 | RICTOR | CCI_2 | Human | Cervix | CC | 1.35e-08 | 1.12e+00 | 0.5249 |
| 253260 | RICTOR | CCI_3 | Human | Cervix | CC | 1.50e-20 | 1.40e+00 | 0.516 |
| 253260 | RICTOR | sample3 | Human | Cervix | CC | 8.26e-12 | 3.32e-01 | 0.1387 |
| 253260 | RICTOR | T3 | Human | Cervix | CC | 3.80e-10 | 3.24e-01 | 0.1389 |
| 253260 | RICTOR | HTA11_3410_2000001011 | Human | Colorectum | AD | 2.45e-15 | -6.11e-01 | 0.0155 |
| 253260 | RICTOR | HTA11_3361_2000001011 | Human | Colorectum | AD | 3.63e-07 | -5.63e-01 | -0.1207 |
| 253260 | RICTOR | HTA11_696_2000001011 | Human | Colorectum | AD | 7.53e-13 | -3.94e-01 | -0.1464 |
| 253260 | RICTOR | HTA11_866_2000001011 | Human | Colorectum | AD | 2.70e-02 | -2.96e-01 | -0.1001 |
| 253260 | RICTOR | HTA11_546_2000001011 | Human | Colorectum | AD | 3.73e-02 | -4.18e-01 | -0.0842 |
| 253260 | RICTOR | HTA11_7862_2000001011 | Human | Colorectum | AD | 1.34e-02 | -5.30e-01 | -0.0179 |
| 253260 | RICTOR | HTA11_866_3004761011 | Human | Colorectum | AD | 3.26e-10 | -4.67e-01 | 0.096 |
| 253260 | RICTOR | HTA11_7696_3000711011 | Human | Colorectum | AD | 1.99e-05 | -4.33e-01 | 0.0674 |
| 253260 | RICTOR | HTA11_99999974143_84620 | Human | Colorectum | MSS | 7.06e-23 | -5.55e-01 | 0.3005 |
| 253260 | RICTOR | F007 | Human | Colorectum | FAP | 1.81e-05 | -4.34e-01 | 0.1176 |
| 253260 | RICTOR | A002-C-010 | Human | Colorectum | FAP | 2.41e-04 | -1.91e-01 | 0.242 |
| 253260 | RICTOR | A001-C-207 | Human | Colorectum | FAP | 1.09e-04 | -2.45e-01 | 0.1278 |
| 253260 | RICTOR | A015-C-203 | Human | Colorectum | FAP | 8.87e-28 | -3.88e-01 | -0.1294 |
| 253260 | RICTOR | A015-C-204 | Human | Colorectum | FAP | 3.91e-04 | -2.55e-01 | -0.0228 |
| Page: 1 2 3 4 5 6 7 8 9 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Cervix |  | CC: Cervix cancer |
| HSIL_HPV: HPV-infected high-grade squamous intraepithelial lesions | ||
| N_HPV: HPV-infected normal cervix | ||
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Lung |  | AAH: Atypical adenomatous hyperplasia |
| AIS: Adenocarcinoma in situ | ||
| IAC: Invasive lung adenocarcinoma | ||
| MIA: Minimally invasive adenocarcinoma | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Thyroid |  | ATC: Anaplastic thyroid cancer |
| HT: Hashimoto's thyroiditis | ||
| PTC: Papillary thyroid cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:00329568 | Lung | IAC | regulation of actin cytoskeleton organization | 70/2061 | 358/18723 | 1.17e-06 | 6.20e-05 | 70 |
| GO:19029038 | Lung | IAC | regulation of supramolecular fiber organization | 73/2061 | 383/18723 | 1.87e-06 | 8.87e-05 | 73 |
| GO:00430876 | Lung | IAC | regulation of GTPase activity | 67/2061 | 348/18723 | 3.43e-06 | 1.44e-04 | 67 |
| GO:00458607 | Lung | IAC | positive regulation of protein kinase activity | 72/2061 | 386/18723 | 4.89e-06 | 1.96e-04 | 72 |
| GO:00719024 | Lung | IAC | positive regulation of protein serine/threonine kinase activity | 44/2061 | 200/18723 | 5.16e-06 | 2.04e-04 | 44 |
| GO:00336748 | Lung | IAC | positive regulation of kinase activity | 83/2061 | 467/18723 | 6.76e-06 | 2.45e-04 | 83 |
| GO:01100538 | Lung | IAC | regulation of actin filament organization | 54/2061 | 278/18723 | 2.27e-05 | 6.28e-04 | 54 |
| GO:00512588 | Lung | IAC | protein polymerization | 56/2061 | 297/18723 | 3.90e-05 | 9.51e-04 | 56 |
| GO:00325357 | Lung | IAC | regulation of cellular component size | 65/2061 | 383/18723 | 2.56e-04 | 4.26e-03 | 65 |
| GO:00322718 | Lung | IAC | regulation of protein polymerization | 42/2061 | 233/18723 | 8.87e-04 | 1.11e-02 | 42 |
| GO:00432548 | Lung | IAC | regulation of protein-containing complex assembly | 68/2061 | 428/18723 | 1.20e-03 | 1.38e-02 | 68 |
| GO:00313348 | Lung | IAC | positive regulation of protein-containing complex assembly | 42/2061 | 237/18723 | 1.25e-03 | 1.44e-02 | 42 |
| GO:00506735 | Lung | IAC | epithelial cell proliferation | 68/2061 | 437/18723 | 2.05e-03 | 2.05e-02 | 68 |
| GO:00331352 | Lung | IAC | regulation of peptidyl-serine phosphorylation | 27/2061 | 144/18723 | 3.91e-03 | 3.24e-02 | 27 |
| GO:00322738 | Lung | IAC | positive regulation of protein polymerization | 26/2061 | 138/18723 | 4.29e-03 | 3.41e-02 | 26 |
| GO:19029058 | Lung | IAC | positive regulation of supramolecular fiber organization | 36/2061 | 209/18723 | 4.34e-03 | 3.44e-02 | 36 |
| GO:00081548 | Lung | IAC | actin polymerization or depolymerization | 37/2061 | 218/18723 | 4.96e-03 | 3.79e-02 | 37 |
| GO:00506785 | Lung | IAC | regulation of epithelial cell proliferation | 58/2061 | 381/18723 | 6.67e-03 | 4.67e-02 | 58 |
| GO:000716313 | Lung | AIS | establishment or maintenance of cell polarity | 56/1849 | 218/18723 | 1.31e-11 | 6.13e-09 | 56 |
| GO:003001013 | Lung | AIS | establishment of cell polarity | 42/1849 | 143/18723 | 5.03e-11 | 1.95e-08 | 42 |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa041505 | Esophagus | ESCC | mTOR signaling pathway | 98/4205 | 156/8465 | 5.81e-04 | 1.95e-03 | 9.97e-04 | 98 |
| hsa0415013 | Esophagus | ESCC | mTOR signaling pathway | 98/4205 | 156/8465 | 5.81e-04 | 1.95e-03 | 9.97e-04 | 98 |
| hsa041502 | Liver | HCC | mTOR signaling pathway | 95/4020 | 156/8465 | 4.70e-04 | 1.99e-03 | 1.11e-03 | 95 |
| hsa0415011 | Liver | HCC | mTOR signaling pathway | 95/4020 | 156/8465 | 4.70e-04 | 1.99e-03 | 1.11e-03 | 95 |
| hsa041504 | Oral cavity | OSCC | mTOR signaling pathway | 90/3704 | 156/8465 | 2.87e-04 | 9.15e-04 | 4.66e-04 | 90 |
| hsa0415012 | Oral cavity | OSCC | mTOR signaling pathway | 90/3704 | 156/8465 | 2.87e-04 | 9.15e-04 | 4.66e-04 | 90 |
| hsa0415021 | Oral cavity | EOLP | mTOR signaling pathway | 34/1218 | 156/8465 | 7.59e-03 | 2.17e-02 | 1.28e-02 | 34 |
| hsa041503 | Oral cavity | EOLP | mTOR signaling pathway | 34/1218 | 156/8465 | 7.59e-03 | 2.17e-02 | 1.28e-02 | 34 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| RICTOR | SNV | Missense_Mutation | novel | c.4426C>T | p.Pro1476Ser | p.P1476S | Q6R327 | protein_coding | tolerated(0.23) | benign(0.031) | TCGA-5L-AAT0-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | tamoxiphen | SD |
| RICTOR | SNV | Missense_Mutation | novel | c.1259N>T | p.Ser420Leu | p.S420L | Q6R327 | protein_coding | deleterious(0.04) | benign(0.055) | TCGA-5L-AAT1-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Hormone Therapy | letrozol | SD |
| RICTOR | SNV | Missense_Mutation | c.2270N>T | p.Thr757Ile | p.T757I | Q6R327 | protein_coding | deleterious(0) | possibly_damaging(0.506) | TCGA-A8-A07G-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Chemotherapy | 5-fluorouracil | CR | |
| RICTOR | SNV | Missense_Mutation | c.4292N>T | p.Ser1431Phe | p.S1431F | Q6R327 | protein_coding | deleterious(0.01) | probably_damaging(0.994) | TCGA-AC-A23H-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | PD | |
| RICTOR | SNV | Missense_Mutation | novel | c.604N>T | p.Val202Leu | p.V202L | Q6R327 | protein_coding | tolerated(0.1) | benign(0.028) | TCGA-AC-A3EH-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD |
| RICTOR | SNV | Missense_Mutation | c.545N>C | p.Arg182Thr | p.R182T | Q6R327 | protein_coding | deleterious(0) | probably_damaging(0.985) | TCGA-BH-A0HA-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
| RICTOR | SNV | Missense_Mutation | c.3665N>T | p.Thr1222Ile | p.T1222I | Q6R327 | protein_coding | deleterious(0) | probably_damaging(0.996) | TCGA-BH-A0HF-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | arimidex | SD | |
| RICTOR | SNV | Missense_Mutation | rs778788008 | c.301G>A | p.Ala101Thr | p.A101T | Q6R327 | protein_coding | tolerated(0.07) | probably_damaging(0.993) | TCGA-BH-A0HY-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | taxotere | CR |
| RICTOR | SNV | Missense_Mutation | c.4882N>A | p.Asp1628Asn | p.D1628N | Q6R327 | protein_coding | deleterious(0.01) | probably_damaging(0.993) | TCGA-BH-A1EV-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Unknown | Unknown | PD | |
| RICTOR | SNV | Missense_Mutation | c.2425N>T | p.Leu809Phe | p.L809F | Q6R327 | protein_coding | deleterious(0.01) | possibly_damaging(0.747) | TCGA-D8-A1JA-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | adriamycin | PD |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| 253260 | RICTOR | CLINICALLY ACTIONABLE | inhibitor | MLN0128 | SAPANISERTIB | |
| 253260 | RICTOR | CLINICALLY ACTIONABLE | inhibitor | OSI-027 | OSI-027 | |
| 253260 | RICTOR | CLINICALLY ACTIONABLE | inhibitor | AZD8055 | AZD-8055 | |
| 253260 | RICTOR | CLINICALLY ACTIONABLE | VISTUSERTIB | VISTUSERTIB | 28028034 |
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