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Gene: FST |
Gene summary for FST |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | FST | Gene ID | 10468 |
| Gene name | follistatin | |
| Gene Alias | FS | |
| Cytomap | 5q11.2 | |
| Gene Type | protein-coding | GO ID | GO:0000003 | UniProtAcc | P19883 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 10468 | FST | LZE4T | Human | Esophagus | ESCC | 3.66e-05 | 8.50e-02 | 0.0811 |
| 10468 | FST | LZE20T | Human | Esophagus | ESCC | 5.78e-03 | 6.29e-02 | 0.0662 |
| 10468 | FST | LZE21T | Human | Esophagus | ESCC | 2.84e-02 | 3.42e-01 | 0.0655 |
| 10468 | FST | P2T-E | Human | Esophagus | ESCC | 1.71e-05 | 2.23e-01 | 0.1177 |
| 10468 | FST | P4T-E | Human | Esophagus | ESCC | 5.99e-37 | 1.92e+00 | 0.1323 |
| 10468 | FST | P9T-E | Human | Esophagus | ESCC | 1.52e-18 | 8.37e-01 | 0.1131 |
| 10468 | FST | P10T-E | Human | Esophagus | ESCC | 3.35e-80 | 1.75e+00 | 0.116 |
| 10468 | FST | P11T-E | Human | Esophagus | ESCC | 1.81e-02 | 3.11e-01 | 0.1426 |
| 10468 | FST | P12T-E | Human | Esophagus | ESCC | 2.80e-100 | 4.00e+00 | 0.1122 |
| 10468 | FST | P15T-E | Human | Esophagus | ESCC | 2.08e-49 | 2.34e+00 | 0.1149 |
| 10468 | FST | P16T-E | Human | Esophagus | ESCC | 1.65e-11 | 4.88e-01 | 0.1153 |
| 10468 | FST | P17T-E | Human | Esophagus | ESCC | 1.42e-07 | 6.57e-01 | 0.1278 |
| 10468 | FST | P20T-E | Human | Esophagus | ESCC | 1.94e-16 | 5.90e-01 | 0.1124 |
| 10468 | FST | P21T-E | Human | Esophagus | ESCC | 1.03e-59 | 3.43e+00 | 0.1617 |
| 10468 | FST | P22T-E | Human | Esophagus | ESCC | 2.21e-35 | 1.04e+00 | 0.1236 |
| 10468 | FST | P23T-E | Human | Esophagus | ESCC | 2.01e-03 | 3.77e-01 | 0.108 |
| 10468 | FST | P26T-E | Human | Esophagus | ESCC | 1.59e-60 | 2.03e+00 | 0.1276 |
| 10468 | FST | P27T-E | Human | Esophagus | ESCC | 4.51e-30 | 1.24e+00 | 0.1055 |
| 10468 | FST | P28T-E | Human | Esophagus | ESCC | 9.63e-06 | 4.30e-01 | 0.1149 |
| 10468 | FST | P30T-E | Human | Esophagus | ESCC | 5.42e-14 | 1.39e+00 | 0.137 |
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| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Skin |  | AK: Actinic keratosis |
| cSCC: Cutaneous squamous cell carcinoma | ||
| SCCIS:squamous cell carcinoma in situ |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:0010631111 | Thyroid | PTC | epithelial cell migration | 149/5968 | 357/18723 | 4.83e-05 | 4.33e-04 | 149 |
| GO:0090132111 | Thyroid | PTC | epithelium migration | 149/5968 | 360/18723 | 7.89e-05 | 6.74e-04 | 149 |
| GO:0061458112 | Thyroid | PTC | reproductive system development | 173/5968 | 427/18723 | 8.70e-05 | 7.23e-04 | 173 |
| GO:0045785112 | Thyroid | PTC | positive regulation of cell adhesion | 176/5968 | 437/18723 | 1.10e-04 | 8.83e-04 | 176 |
| GO:0090130111 | Thyroid | PTC | tissue migration | 150/5968 | 365/18723 | 1.13e-04 | 9.01e-04 | 150 |
| GO:0048608111 | Thyroid | PTC | reproductive structure development | 170/5968 | 424/18723 | 1.86e-04 | 1.41e-03 | 170 |
| GO:00900925 | Thyroid | PTC | regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | 108/5968 | 256/18723 | 3.07e-04 | 2.14e-03 | 108 |
| GO:003032317 | Thyroid | PTC | respiratory tube development | 80/5968 | 181/18723 | 3.23e-04 | 2.23e-03 | 80 |
| GO:0003158111 | Thyroid | PTC | endothelium development | 62/5968 | 136/18723 | 5.45e-04 | 3.48e-03 | 62 |
| GO:004544619 | Thyroid | PTC | endothelial cell differentiation | 55/5968 | 118/18723 | 5.64e-04 | 3.59e-03 | 55 |
| GO:003032419 | Thyroid | PTC | lung development | 77/5968 | 177/18723 | 7.33e-04 | 4.58e-03 | 77 |
| GO:006054115 | Thyroid | PTC | respiratory system development | 86/5968 | 203/18723 | 1.02e-03 | 6.08e-03 | 86 |
| GO:004354219 | Thyroid | PTC | endothelial cell migration | 112/5968 | 279/18723 | 2.03e-03 | 1.09e-02 | 112 |
| GO:009028712 | Thyroid | PTC | regulation of cellular response to growth factor stimulus | 120/5968 | 304/18723 | 2.87e-03 | 1.42e-02 | 120 |
| GO:0071241110 | Thyroid | PTC | cellular response to inorganic substance | 92/5968 | 226/18723 | 3.01e-03 | 1.49e-02 | 92 |
| GO:00901013 | Thyroid | PTC | negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | 56/5968 | 131/18723 | 5.63e-03 | 2.55e-02 | 56 |
| GO:004654612 | Thyroid | PTC | development of primary male sexual characteristics | 60/5968 | 142/18723 | 5.79e-03 | 2.61e-02 | 60 |
| GO:000858412 | Thyroid | PTC | male gonad development | 59/5968 | 141/18723 | 7.88e-03 | 3.33e-02 | 59 |
| GO:00614841 | Thyroid | PTC | hematopoietic stem cell homeostasis | 11/5968 | 18/18723 | 1.00e-02 | 4.07e-02 | 11 |
| GO:0071248110 | Thyroid | PTC | cellular response to metal ion | 78/5968 | 197/18723 | 1.29e-02 | 4.98e-02 | 78 |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa043507 | Esophagus | ESCC | TGF-beta signaling pathway | 69/4205 | 108/8465 | 1.92e-03 | 5.54e-03 | 2.84e-03 | 69 |
| hsa0435014 | Esophagus | ESCC | TGF-beta signaling pathway | 69/4205 | 108/8465 | 1.92e-03 | 5.54e-03 | 2.84e-03 | 69 |
| hsa043506 | Oral cavity | OSCC | TGF-beta signaling pathway | 60/3704 | 108/8465 | 8.66e-03 | 1.97e-02 | 1.00e-02 | 60 |
| hsa0435013 | Oral cavity | OSCC | TGF-beta signaling pathway | 60/3704 | 108/8465 | 8.66e-03 | 1.97e-02 | 1.00e-02 | 60 |
| hsa0435041 | Oral cavity | NEOLP | TGF-beta signaling pathway | 28/1112 | 108/8465 | 2.46e-04 | 1.62e-03 | 1.02e-03 | 28 |
| hsa0435051 | Oral cavity | NEOLP | TGF-beta signaling pathway | 28/1112 | 108/8465 | 2.46e-04 | 1.62e-03 | 1.02e-03 | 28 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| FST | SNV | Missense_Mutation | c.495A>C | p.Lys165Asn | p.K165N | P19883 | protein_coding | deleterious(0) | possibly_damaging(0.845) | TCGA-AR-A24Q-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD | |
| FST | SNV | Missense_Mutation | rs370731523 | c.940N>A | p.Gly314Arg | p.G314R | P19883 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-LD-A7W5-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | taxotere | SD |
| FST | insertion | Frame_Shift_Ins | novel | c.922_923insT | p.Glu309GlyfsTer22 | p.E309Gfs*22 | P19883 | protein_coding | TCGA-E2-A1IO-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | docetaxel | SD | ||
| FST | SNV | Missense_Mutation | rs202174134 | c.836N>T | p.Ser279Leu | p.S279L | P19883 | protein_coding | deleterious(0.05) | benign(0.178) | TCGA-UC-A7PG-06 | Cervix | cervical & endocervical cancer | Female | <65 | III/IV | Chemotherapy | cisplatin | PD |
| FST | SNV | Missense_Mutation | novel | c.898G>T | p.Ala300Ser | p.A300S | P19883 | protein_coding | tolerated(0.56) | possibly_damaging(0.732) | TCGA-VS-A8EJ-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | PD |
| FST | SNV | Missense_Mutation | c.695N>A | p.Gly232Glu | p.G232E | P19883 | protein_coding | deleterious(0.04) | probably_damaging(1) | TCGA-AA-A00N-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
| FST | SNV | Missense_Mutation | c.498N>T | p.Lys166Asn | p.K166N | P19883 | protein_coding | deleterious(0) | benign(0.092) | TCGA-AZ-4315-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
| FST | SNV | Missense_Mutation | rs371840444 | c.959C>T | p.Ser320Leu | p.S320L | P19883 | protein_coding | tolerated(0.07) | benign(0.003) | TCGA-CA-6718-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | PD |
| FST | SNV | Missense_Mutation | novel | c.446G>T | p.Arg149Ile | p.R149I | P19883 | protein_coding | deleterious(0) | possibly_damaging(0.568) | TCGA-AG-A002-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
| FST | SNV | Missense_Mutation | rs150238035 | c.52N>T | p.Leu18Phe | p.L18F | P19883 | protein_coding | tolerated(0.21) | benign(0.001) | TCGA-F5-6814-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| 10468 | FST | DRUGGABLE GENOME | ANTI-ANDROGEN | 14761877 | ||
| 10468 | FST | DRUGGABLE GENOME | TUMOR NECROSIS FACTOR | 17436000 | ||
| 10468 | FST | DRUGGABLE GENOME | KINASE INHIBITOR | 16854407 | ||
| 10468 | FST | DRUGGABLE GENOME | INDOMETHACIN | INDOMETHACIN | 15941869 | |
| 10468 | FST | DRUGGABLE GENOME | FREUNDS ADJUVANT | 10734405 | ||
| 10468 | FST | DRUGGABLE GENOME | INHIBINS | 10864854 | ||
| 10468 | FST | DRUGGABLE GENOME | ALPHA-ADRENERGIC AGONIST | 9427529 | ||
| 10468 | FST | DRUGGABLE GENOME | NERVE GROWTH FACTOR | 9770356 | ||
| 10468 | FST | DRUGGABLE GENOME | BICALUTAMIDE | BICALUTAMIDE | 14761877 | |
| 10468 | FST | DRUGGABLE GENOME | ANDROGENS | 14512439 |
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